Rh7DG107100

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019977
Physical Location & Seq
Forward (+)
9102399 .. 9104023
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG107100.1

Sequence Viewer

Length: 525 bp
ATGAGAAATCTTGTCTTCATTGTGTGTCGAGTACTTGCTGTTGTTTGTGTGGTGTATACAATACTCTTGCTTTGTCCCAAGTGCAGACGGGAACTTACTGGCCACAAGCTCAGAGTGATGCTGATTAAAATTAGAAGAGTGGTCAGAAAATACTACTACTACTACTCTGATTCAAAGGCAGAGGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTACAAAGGCTATGCATATCGGATTACCTTGGGGAACCAAGTATGTGTTTCTTGGCGAGCTGCTGTGGAGATGGGTGTTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCTTCACACTTTCAAGCGTCGGCCAGGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAACAACACAAGATGATGATATAAGGCACTGGACCCTTCTTTTTCTGCTCTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

174

Amino Acids

20.38

Weight (kDa)

7.97

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 132 - 168 3.9e-08 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 100, 394
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 4 cut(s) 174, 355, 362, 387
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 109, 288
AluI AGCT 2 cut(s) 109, 288
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 2 cut(s) 100, 394
ApeKI GCWGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 397
AvaII GGWCC 1 cut(s) 498
BalI TGGCCA 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 206
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 264, 500
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 108, 353
BpiI GAAGAC 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse1I ACTGG 2 cut(s) 103, 500
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 124, 447
BseNI ACTGG 2 cut(s) 103, 500
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 396
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 102, 396
Bso31I GGTCTC 1 cut(s) 206
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 102, 396
BspCNI CTCAG 2 cut(s) 123, 448
BspLI GGNNCC 2 cut(s) 264, 500
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 103, 500
BssECI CCNNGG 1 cut(s) 256
BssNAI GTATAC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 110, 456
BstMAI GTCTC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 7
BstZ17I GTATAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 102, 396
BtsIMutI CAGTG 2 cut(s) 453, 493
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 498
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 32
CviJI RGCY 5 cut(s) 102, 109, 238, 288, 396
CviKI_1 RGCY 5 cut(s) 102, 109, 238, 288, 396
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 110, 456
EaeI YGGCCR 2 cut(s) 100, 394
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 256
FaiI YATR 9 cut(s) 57, 241, 245, 272, 331, 338, 340, 444, 488
FaqI GGGAC 1 cut(s) 60
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 2 cut(s) 102, 396
HgaI GACGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 1 cut(s) 170
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 57, 430
Hpy188I TCNGA 4 cut(s) 113, 146, 169, 250
Hpy8I GTNNAC 2 cut(s) 57, 430
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 5 cut(s) 333, 349, 385, 410, 512
HpyCH4V TGCA 3 cut(s) 84, 243, 344
HpyF3I CTNAG 2 cut(s) 110, 456
LpnPI CCDG 4 cut(s) 84, 383, 410, 481
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 108, 353
MaeIII GTNAC 1 cut(s) 403
MboII GAAGA 3 cut(s) 7, 147, 442
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 129, 439
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 3 cut(s) 175, 180, 337
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 245
MscI TGGCCA 1 cut(s) 102
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
NlaIV GGNNCC 2 cut(s) 264, 500
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 264, 500
PspPI GGNCC 1 cut(s) 498
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 398
SetI ASST 7 cut(s) 111, 191, 258, 290, 360, 402, 410
SfaNI GCATC 2 cut(s) 108, 353
SinI GGWCC 1 cut(s) 498
Sse9I AATT 2 cut(s) 129, 439
SsiI CCGC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 256
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 129, 439
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 460, 500
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 2 cut(s) 460, 500
VpaK11BI GGWCC 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.