Rh3CG146600

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019977
Physical Location & Seq
Forward (+)
12174624 .. 12177129
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG146600.1

Sequence Viewer

Length: 639 bp
ATGAGAAATCTTGTCTTCATTGTGTGTCGAGTACTTGCTATTGTTTGTGTGGTGTACACAATACTCTTGCTTTGTCCCAAGTGCAGACGGGAACTTACCGGCCGCAAGCTCAGAGTGATGCTGATTAAAATTAGAAGAGTGGTCAGAAAATACTACTACTACTACTCTGATTCAAAGGCAGATGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTACAAAGTCTATGCATATCGGATTACCTTGGGGAACCAAGGATGTGTTTGTTGGCGAGCTGCTGTGGAGATGGGTGTTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCGTCACACTTTTAAGCGTCGGCCAGGTCGTCACCTTTTGGGAAAGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACAAGATGATGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTATTGAGCCAAGTGGAAGTTGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATTCATGAGATGGAAGGAGCAATACTTTGTGAATGTTGGCACAGACTGTACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

212

Amino Acids

24.68

Weight (kDa)

8.4

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 133 - 205 2.6e-19 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 103, 371
AcoI YGGCCR 2 cut(s) 100, 394
AcsI RAATTY 1 cut(s) 503
AfaI GTAC 3 cut(s) 33, 56, 631
AgsI TTSAA 3 cut(s) 174, 355, 362
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 109, 288
AluI AGCT 2 cut(s) 109, 288
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 2 cut(s) 100, 394
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 397
AvaII GGWCC 1 cut(s) 498
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 293, 585
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 637
BglII AGATCT 1 cut(s) 559
BisI GCNGC 2 cut(s) 103, 289
BlsI GCNGC 2 cut(s) 104, 290
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 108, 353
BpiI GAAGAC 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 256, 266
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 256, 266
BseGI GGATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 124, 447, 577
BseNI ACTGG 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 396
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 102, 396
Bso31I GGTCTC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 2 cut(s) 103, 371
BspANI GGCC 2 cut(s) 102, 396
BspCNI CTCAG 3 cut(s) 123, 448, 576
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 256, 266
BssMI GATC 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 256, 266
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 107, 286
BstDEI CTNAG 3 cut(s) 110, 456, 563
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 559
BstMCI CGRYCG 1 cut(s) 103
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 102, 396
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 453, 493
Cac8I GCNNGC 2 cut(s) 107, 286
CciI TCATGA 1 cut(s) 585
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 498
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 32, 55, 630
CviAII CATG 1 cut(s) 586
CviJI RGCY 5 cut(s) 102, 109, 288, 396, 531
CviKI_1 RGCY 5 cut(s) 102, 109, 288, 396, 531
CviQI GTAC 3 cut(s) 32, 55, 630
DdeI CTNAG 3 cut(s) 110, 456, 563
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 100, 394
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 256, 266
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 498
Eco52I CGGCCG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 256, 266
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 2 cut(s) 256, 266
FaeI CATG 1 cut(s) 589
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 585
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 103, 289
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 103, 289
FspBI CTAG 1 cut(s) 637
GluI GCNGC 2 cut(s) 103, 289
HaeIII GGCC 2 cut(s) 102, 396
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 379
Hin1II CATG 1 cut(s) 589
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 3 cut(s) 55, 57, 430
Hpy188I TCNGA 4 cut(s) 113, 146, 169, 250
Hpy188III TCNNGA 1 cut(s) 586
Hpy8I GTNNAC 3 cut(s) 55, 57, 430
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 333, 349, 519, 589
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 84, 243, 344
HpyF3I CTNAG 3 cut(s) 110, 456, 563
Hsp92II CATG 1 cut(s) 589
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 598
LpnPI CCDG 4 cut(s) 112, 383, 410, 481
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 108, 353
MaeI CTAG 1 cut(s) 637
MaeIII GTNAC 2 cut(s) 376, 403
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 3 cut(s) 7, 147, 442
MflI RGATCY 1 cut(s) 559
MluCI AATT 3 cut(s) 129, 439, 503
MnlI CCTC 2 cut(s) 180, 337
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 2 cut(s) 126, 386
MslI CAYNNNNRTG 1 cut(s) 584
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
NdeII GATC 1 cut(s) 559
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 376, 403
NsiI ATGCAT 1 cut(s) 245
PagI TCATGA 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 104, 290
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 498
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 33, 56, 631
RsaNI GTAC 3 cut(s) 32, 55, 630
RseI CAYNNNNRTG 1 cut(s) 584
SaqAI TTAA 2 cut(s) 126, 386
SatI GCNGC 2 cut(s) 103, 289
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 398
SetI ASST 8 cut(s) 111, 191, 258, 290, 360, 402, 410, 635
SfaNI GCATC 2 cut(s) 108, 353
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 584
Sse9I AATT 3 cut(s) 129, 439, 503
SsiI CCGC 2 cut(s) 103, 371
SspMI CTAG 1 cut(s) 637
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 2 cut(s) 256, 266
TaaI ACNGT 1 cut(s) 629
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 129, 439, 503
TatI WGTACW 2 cut(s) 31, 54
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 126, 386
Tru9I TTAA 2 cut(s) 126, 386
TscAI CASTG 2 cut(s) 460, 500
TseFI GTSAC 2 cut(s) 376, 403
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 2 cut(s) 376, 403
TspDTI ATGAA 2 cut(s) 7, 574
TspRI CASTG 2 cut(s) 460, 500
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XspI CTAG 1 cut(s) 637
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.