Rorug03G0078400

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0019977
Physical Location & Seq
Forward (+)
6135893 .. 6136892
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0078400.1

Sequence Viewer

Length: 753 bp
ATGGCGGCGTCGGATAACCTAGCAGCGATGGAGCCGTGGGCGTACAGGCCGGCGACGACGTTTGCGGACTCGTGGATCTCGGAGGCGTTTGCGAGGGACACTAAGGCGCTGACGATGGCGCTGCAGAAGTCGCTGGCGGACAACAGGAGCTCGGAATCTGCGGATTCCGACTTCTTGCCGTTTTTCGATACGTTTCAGGCGGAGACGACGGCTACGCCGACTGTTTCCGGGGTTTCGGGGTCGGATCCGGAGTCGGTCGCGGCGCCGAAGCTGCGGCAGAGGAACGCGGTTCCCGTTTCGGGGGGCAAGGTGGCGAAACGGAAGTCGCGCGCGTCGAAGCGGACGCAGACGACGTTCATCACGGCGGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGGGTGAGGTTTAACGGACAGCAGTTCTCTTCGGTGCCGACGATTGTCAAGCCCGAGCCGCAGAGACCCGGCGGCAATCGCTTACCGGGCGGCGGGTGCTTGCCGACGCTCGACACGTCGGCGTTGTTGTTCGACCACCATCAACAGCAGCAGCAGAGGCAGCAGTACCAGCAGCAAGTTGTGGGGCCCGCATCGGCAACGGGAGGAGGTGGACAGATGGGACCAATGCGTTATGGGGCGACGGTGGAGGTGGCTGAGGGTGGCGGTGGCGGTGGCGTCTCTGGCGGGGGATTAGGCTTTGACTCTTATTCGAGCTTTCCCACTTTGGAGTCGTGGAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

250

Amino Acids

26.47

Weight (kDa)

8.73

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 115 - 136 2.8e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccB1I GGYRCC 2 cut(s) 262, 439
AccII CGCG 5 cut(s) 260, 287, 328, 330, 332
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 3 cut(s) 83, 239, 252
AcyI GRCGYC 3 cut(s) 8, 263, 681
AfaI GTAC 2 cut(s) 44, 572
AfiI CCNNNNNNNGG 4 cut(s) 299, 300, 388, 497
AflIII ACRYGT 1 cut(s) 519
AjiI CACGTC 1 cut(s) 522
AluBI AGCT 3 cut(s) 150, 271, 720
AluI AGCT 3 cut(s) 150, 271, 720
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 3 cut(s) 197, 463, 688
AlwI GGATC 3 cut(s) 83, 239, 252
Ama87I CYCGRG 1 cut(s) 458
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 2 cut(s) 47, 590
ApaI GGGCCC 1 cut(s) 594
ApeKI GCWGC 8 cut(s) 23, 121, 271, 394, 553, 556, 565, 577
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 5 cut(s) 109, 121, 265, 330, 332
AspS9I GGNCC 4 cut(s) 367, 590, 591, 626
AsuC2I CCSGG 4 cut(s) 229, 371, 474, 492
AsuHPI GGTGA 2 cut(s) 412, 421
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 2 cut(s) 367, 626
BaeGI GKGCMC 1 cut(s) 594
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 2 cut(s) 262, 439
BanII GRGCYC 2 cut(s) 152, 594
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 660
BbvI GCAGC 8 cut(s) 35, 108, 258, 406, 565, 568, 577, 589
BccI CCATC 5 cut(s) 22, 109, 382, 552, 616
BceAI ACGGC 4 cut(s) 19, 163, 225, 378
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 4 cut(s) 229, 371, 474, 492
BcoDI GTCTC 3 cut(s) 197, 463, 688
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 266
BfuAI ACCTGC 1 cut(s) 388
Bme1390I CCNGG 4 cut(s) 229, 371, 474, 492
Bme18I GGWCC 2 cut(s) 367, 626
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 4 cut(s) 367, 590, 591, 626
BmiI GGNNCC 9 cut(s) 33, 246, 264, 291, 369, 441, 591, 592, 627
BmrFI CCNGG 4 cut(s) 229, 371, 474, 492
BmsI GCATC 1 cut(s) 605
BoxI GACNNNNGTC 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 660
BpuMI CCSGG 4 cut(s) 229, 371, 474, 492
BsaHI GRCGYC 3 cut(s) 8, 263, 681
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 35, 228
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 300, 388, 497
Bse118I RCCGGY 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 35, 228
BseLI CCNNNNNNNGG 4 cut(s) 299, 300, 388, 497
BseMII CTCAG 1 cut(s) 651
BsePI GCGCGC 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 594
BseXI GCAGC 8 cut(s) 35, 108, 258, 406, 565, 568, 577, 589
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 5 cut(s) 260, 287, 328, 330, 332
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 49, 592
BshNI GGYRCC 2 cut(s) 262, 439
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 7 cut(s) 50, 228, 248, 371, 382, 474, 491
BslFI GGGAC 2 cut(s) 110, 639
BslI CCNNNNNNNGG 4 cut(s) 299, 300, 388, 497
BsmAI GTCTC 3 cut(s) 197, 463, 688
BsmBI CGTCTC 2 cut(s) 197, 688
BsmFI GGGAC 2 cut(s) 110, 639
BsnI GGCC 2 cut(s) 49, 592
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 590
Bsp1286I GDGCHC 2 cut(s) 152, 594
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 75, 244
BspANI GGCC 2 cut(s) 49, 592
BspCNI CTCAG 1 cut(s) 652
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 5 cut(s) 260, 287, 328, 330, 332
BspLI GGNNCC 9 cut(s) 33, 246, 264, 291, 369, 441, 591, 592, 627
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 3 cut(s) 83, 239, 252
BspT107I GGYRCC 2 cut(s) 262, 439
BspTNI GGTCTC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 35, 228
BssHII GCGCGC 1 cut(s) 328
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 3 cut(s) 8, 263, 681
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 223, 649
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 3 cut(s) 8, 263, 681
BstAPI GCANNNNNTGC 1 cut(s) 391
BstC8I GCNNGC 5 cut(s) 51, 135, 330, 506, 594
BstDEI CTNAG 2 cut(s) 102, 660
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 5 cut(s) 260, 287, 328, 330, 332
BstH2I RGCGCY 3 cut(s) 110, 122, 266
BstHHI GCGC 5 cut(s) 109, 121, 265, 330, 332
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 3 cut(s) 197, 463, 688
BstMBI GATC 2 cut(s) 75, 244
BstMCI CGRYCG 1 cut(s) 258
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 227, 369, 472, 490
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 594
BstUI CGCG 5 cut(s) 260, 287, 328, 330, 332
BstV1I GCAGC 8 cut(s) 35, 108, 258, 406, 565, 568, 577, 589
BstX2I RGATCY 2 cut(s) 75, 244
BstYI RGATCY 2 cut(s) 75, 244
BsuRI GGCC 2 cut(s) 49, 592
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 522
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 5 cut(s) 51, 135, 330, 506, 594
CfoI GCGC 5 cut(s) 109, 121, 265, 330, 332
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 4 cut(s) 367, 590, 591, 626
CseI GACGC 4 cut(s) 321, 352, 520, 670
Csp6I GTAC 2 cut(s) 43, 571
CviAII CATG 1 cut(s) 748
CviQI GTAC 2 cut(s) 43, 571
DdeI CTNAG 2 cut(s) 102, 660
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 3 cut(s) 152, 215, 380
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 152, 594
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 367, 626
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 590
EcoT38I GRGCYC 2 cut(s) 152, 594
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
Esp3I CGTCTC 2 cut(s) 197, 688
FaeI CATG 1 cut(s) 751
FaiI YATR 2 cut(s) 639, 749
FaqI GGGAC 2 cut(s) 110, 639
FatI CATG 1 cut(s) 747
FauI CCCGC 3 cut(s) 491, 601, 683
FriOI GRGCYC 2 cut(s) 152, 594
FspBI CTAG 1 cut(s) 20
GlaI GCGC 5 cut(s) 108, 120, 264, 329, 331
HaeII RGCGCY 3 cut(s) 110, 122, 266
HaeIII GGCC 2 cut(s) 49, 592
HapII CCGG 7 cut(s) 50, 228, 248, 371, 382, 474, 491
HgaI GACGC 4 cut(s) 321, 352, 520, 670
HhaI GCGC 5 cut(s) 109, 121, 265, 330, 332
Hin1I GRCGYC 3 cut(s) 8, 263, 681
Hin1II CATG 1 cut(s) 751
Hin6I GCGC 5 cut(s) 107, 119, 263, 328, 330
HinP1I GCGC 5 cut(s) 107, 119, 263, 328, 330
HinfI GANTC 6 cut(s) 68, 155, 164, 251, 707, 734
HpaII CCGG 7 cut(s) 50, 228, 248, 371, 382, 474, 491
HphI GGTGA 2 cut(s) 412, 421
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 5 cut(s) 13, 82, 154, 169, 244
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 736
HpyCH4III ACNGT 2 cut(s) 223, 649
HpyCH4IV ACGT 4 cut(s) 59, 191, 353, 521
HpyCH4V TGCA 2 cut(s) 124, 394
HpyF3I CTNAG 2 cut(s) 102, 660
HpySE526I ACGT 4 cut(s) 59, 191, 353, 521
Hsp92I GRCGYC 3 cut(s) 8, 263, 681
Hsp92II CATG 1 cut(s) 751
HspAI GCGC 5 cut(s) 107, 119, 263, 328, 330
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 247
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 2 cut(s) 31, 147
Lsp1109I GCAGC 8 cut(s) 35, 108, 258, 406, 565, 568, 577, 589
LweI GCATC 1 cut(s) 605
MaeI CTAG 1 cut(s) 20
MaeII ACGT 4 cut(s) 59, 191, 353, 521
MaeIII GTNAC 1 cut(s) 400
MalI GATC 2 cut(s) 77, 246
MauBI CGCGCGCG 1 cut(s) 328
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 426
MflI RGATCY 2 cut(s) 75, 244
MhlI GDGCHC 2 cut(s) 152, 594
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 4 cut(s) 62, 260, 701, 743
MmeI TCCRAC 2 cut(s) 192, 222
MnlI CCTC 9 cut(s) 76, 87, 273, 405, 555, 602, 605, 646, 655
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 49
MseI TTAA 1 cut(s) 417
MspI CCGG 7 cut(s) 50, 228, 248, 371, 382, 474, 491
MspR9I CCNGG 4 cut(s) 229, 371, 474, 492
MvnI CGCG 5 cut(s) 260, 287, 328, 330, 332
NaeI GCCGGC 1 cut(s) 51
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 4 cut(s) 229, 371, 474, 492
NdeII GATC 2 cut(s) 75, 244
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 751
NlaIV GGNNCC 9 cut(s) 33, 246, 264, 291, 369, 441, 591, 592, 627
NmuCI GTSAC 1 cut(s) 400
PaqCI CACCTGC 1 cut(s) 388
PauI GCGCGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 6 cut(s) 215, 291, 332, 350, 443, 518
PdiI GCCGGC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 155, 164
PleI GAGTC 4 cut(s) 62, 259, 701, 742
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 4 cut(s) 62, 259, 701, 742
PshAI GACNNNNGTC 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 9 cut(s) 33, 246, 264, 291, 369, 441, 591, 592, 627
PspOMI GGGCCC 1 cut(s) 590
PspPI GGNCC 4 cut(s) 367, 590, 591, 626
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 244
PteI GCGCGC 1 cut(s) 328
RsaI GTAC 2 cut(s) 44, 572
RsaNI GTAC 2 cut(s) 43, 571
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 4 cut(s) 367, 590, 591, 626
SchI GAGTC 4 cut(s) 62, 260, 701, 743
ScrFI CCNGG 4 cut(s) 229, 371, 474, 492
SduI GDGCHC 2 cut(s) 152, 594
SfaNI GCATC 1 cut(s) 605
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 2 cut(s) 367, 626
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 227, 369, 472, 490
TaaI ACNGT 2 cut(s) 223, 649
TaiI ACGT 4 cut(s) 62, 194, 356, 524
TaqI TCGA 5 cut(s) 186, 335, 516, 537, 716
TaqII GACCGA 1 cut(s) 244
TauI GCSGC 6 cut(s) 8, 263, 277, 466, 480, 498
TfiI GAWTC 2 cut(s) 155, 164
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 8 cut(s) 23, 121, 271, 394, 553, 556, 565, 577
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 346
TspGWI ACGGA 2 cut(s) 334, 435
VpaK11BI GGWCC 2 cut(s) 367, 626
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.