Rw7G009010

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019977
Physical Location & Seq
Forward (+)
8426821 .. 8429381
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009010.1

Sequence Viewer

Length: 891 bp
ATGAGAAATCTTGTCTTCATTGTGTGTCGAGTACTTGCTGTTGTTTGTGTGGTGTATACAATACTCTTGCTTTGTCCCAAGTGCAGACGGGAACTTACTGGCCACAAGCTCAGAGTGATGCTGATTAAAATTAGCAGAGTGGTCAGAAAATACTACTACTACTACTCTGATTCAAAGGCAGAGGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCCATTGATTTTACAAAGGCTATGCATATCGGATTACCTTGGGGAACCAAGTATGTGTTTCTTGGCGAGCTGCTGTGGAGATGGGTGTTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCTTCACACTTTCAAGCGTCGGCCAGGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAACAACACAAGATGATGATATAAGGCACTGGACCCTTCTTTTTCTGCTCTATTGCCAAGTGGAAGTTGATGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATATATGAGATGGAAGGAGCAATACTTTGTGAATGTTGGCAGAGACTGTGGTTTGACTATAGCCGGCTTTTACTATGTGTGTTTCTCATGTAGAAGTAAACTATCACTTTTAATACCATTCACTGTTTTCTGGGTTTACTTTTGTCACCTCATTAGTACATTGACTGAAATGCTATTTGAACCAACCTGCAGCCCGTGCCAGAAGCTTGAGCTGAAACATACAAATGAGGGAAGATTAGGATTCAGTTTTTCGTCCTACAAACCAATCTGTAGATTCGTTTGTGTTAGTAATGGTACTTCACGGGCTGTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

296

Amino Acids

34.33

Weight (kDa)

8.17

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 132 - 265 3.1e-23 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 770
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 100, 394
AfaI GTAC 3 cut(s) 33, 733, 871
AgsI TTSAA 5 cut(s) 174, 355, 362, 387, 755
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 4 cut(s) 109, 288, 781, 787
AluI AGCT 4 cut(s) 109, 288, 781, 787
Alw26I GTCTC 2 cut(s) 206, 612
AlwNI CAGNNNCTG 1 cut(s) 621
AoxI GGCC 2 cut(s) 100, 394
ApeKI GCWGC 2 cut(s) 288, 765
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 397, 713
AvaII GGWCC 1 cut(s) 498
BalI TGGCCA 1 cut(s) 102
BarI GAAGNNNNNNTAC 4 cut(s) 581, 613, 856, 888
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 275, 777
BccI CCATC 3 cut(s) 293, 530, 579
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 206, 612
BfmI CTRYAG 3 cut(s) 633, 763, 844
BfuAI ACCTGC 1 cut(s) 770
BglII AGATCT 1 cut(s) 553
BisI GCNGC 2 cut(s) 289, 766
BlsI GCNGC 2 cut(s) 290, 767
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 264, 500
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 108, 353
BpiI GAAGAC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 103, 500
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 256
BseMII CTCAG 3 cut(s) 124, 447, 571
BseNI ACTGG 2 cut(s) 103, 500
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 275, 777
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 396
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 206, 612
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 102, 396
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 102, 396
BspCNI CTCAG 3 cut(s) 123, 448, 570
BspLI GGNNCC 2 cut(s) 264, 500
BspMAI CTGCAG 1 cut(s) 767
BspMI ACCTGC 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 2 cut(s) 103, 500
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 553
BssNAI GTATAC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 623, 700
BstAPI GCANNNNNTGC 1 cut(s) 771
BstC8I GCNNGC 2 cut(s) 286, 640
BstDEI CTNAG 3 cut(s) 110, 456, 557
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 206, 612
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 3 cut(s) 633, 763, 844
BstV1I GCAGC 2 cut(s) 275, 777
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 102, 396
BtsIMutI CAGTG 3 cut(s) 453, 493, 696
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 2 cut(s) 286, 640
CaiI CAGNNNCTG 1 cut(s) 621
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 498
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 32, 732, 870
CviAII CATG 1 cut(s) 663
CviQI GTAC 3 cut(s) 32, 732, 870
DdeI CTNAG 3 cut(s) 110, 456, 557
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 100, 394
Eco130I CCWWGG 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 666
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 662
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 289, 766
Fsp4HI GCNGC 2 cut(s) 289, 766
GluI GCNGC 2 cut(s) 289, 766
HaeIII GGCC 2 cut(s) 102, 396
HapII CCGG 1 cut(s) 639
HgaI GACGC 1 cut(s) 379
Hin1II CATG 1 cut(s) 666
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 3 cut(s) 170, 816, 849
HpaII CCGG 1 cut(s) 639
HphI GGTGA 2 cut(s) 397, 713
Hpy166II GTNNAC 4 cut(s) 57, 430, 674, 712
Hpy188I TCNGA 4 cut(s) 113, 146, 169, 250
Hpy8I GTNNAC 4 cut(s) 57, 430, 674, 712
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 6 cut(s) 333, 349, 385, 410, 512, 583
HpyCH4III ACNGT 2 cut(s) 623, 700
HpyCH4V TGCA 4 cut(s) 84, 243, 344, 765
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
HpyF3I CTNAG 3 cut(s) 110, 456, 557
Hsp92II CATG 1 cut(s) 666
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 592
LpnPI CCDG 8 cut(s) 84, 383, 410, 481, 652, 691, 775, 788
Lsp1109I GCAGC 2 cut(s) 275, 777
LweI GCATC 2 cut(s) 108, 353
MaeIII GTNAC 2 cut(s) 403, 719
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 3 cut(s) 7, 442, 819
MflI RGATCY 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 129, 439
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 5 cut(s) 175, 180, 337, 734, 796
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 245
MroNI GCCGGC 1 cut(s) 638
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 126, 686
MslI CAYNNNNRTG 2 cut(s) 578, 798
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 1 cut(s) 639
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 771
NaeI GCCGGC 1 cut(s) 640
NdeII GATC 1 cut(s) 553
NgoMIV GCCGGC 1 cut(s) 638
NlaIII CATG 1 cut(s) 666
NlaIV GGNNCC 2 cut(s) 264, 500
NmuCI GTSAC 2 cut(s) 403, 719
NsiI ATGCAT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 170, 816, 849
PkrI GCNGC 2 cut(s) 290, 767
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 264, 500
PspPI GGNCC 1 cut(s) 498
PstI CTGCAG 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 621
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 3 cut(s) 33, 733, 871
RsaNI GTAC 3 cut(s) 32, 732, 870
RseI CAYNNNNRTG 2 cut(s) 578, 798
SaqAI TTAA 2 cut(s) 126, 686
SatI GCNGC 2 cut(s) 289, 766
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 398
SfaNI GCATC 2 cut(s) 108, 353
SfcI CTRYAG 3 cut(s) 633, 763, 844
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 578, 798
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 2 cut(s) 129, 439
SsiI CCGC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 623, 700
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 129, 439
TatI WGTACW 2 cut(s) 31, 731
TfiI GAWTC 3 cut(s) 170, 816, 849
Tru1I TTAA 2 cut(s) 126, 686
Tru9I TTAA 2 cut(s) 126, 686
TscAI CASTG 3 cut(s) 460, 500, 703
TseFI GTSAC 2 cut(s) 403, 719
TseI GCWGC 2 cut(s) 288, 765
Tsp45I GTSAC 2 cut(s) 403, 719
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 460, 500, 703
VpaK11BI GGWCC 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.