RchiOBHm_Chr7g0190351

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
9466207 .. 9469530
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17000

Sequence Viewer

Length: 1623 bp
ATGAATAATAATAATAATAATAATCAGGCCAAGAATGTGGCAGTGCCGCCCCATTTTGGCAATCCCGGGGCTGTGCCGCAATCTATTCCCATTAACCACCAGCCGCATCTTCTCTCTCAAACACAACCTCAAGCACAAGGTGCATCGCATTTTCCTGGGCACTTTCAGTTGTCTGAGCCCCAAGCGCAGGCACTTGCACAGGCACAGTATGTGAATGCTCACGCACAAGCTCAAAATCAAGCCGCCCATGCCCAATTTCAGTTGCAAGCTCAAGCTCAGTCTCTTGCCCAATTACATAATGCCAGTCCGGGTGTTTCGTCACCCTCCATAGCAACGCCAAGCACAGGAACTGCTAAGCGGGCTAACCAGAAGCCACCTTCTCGGCCTCAAGGTTCATCTCAGGCCAATACAGGTCCACTGTTTAAAAACATGGAGCTTACTCCAGCTGCTCGTAGAAAGAAGCGAAAGCTACCTGATAAACAGATACCAGATAAAGTGGCTGCACTTCTGCCAGAGTCTGGTCTATATACTCAGTTGCTTGAATTTGAGGCTCGTGTTGATGCTGCTTTGGCAAGAAAGAAGGTTGAAATCCAGGAATCACTTAAATGTCCTCCCCGTGTTCAGAAGATGCTTCGAGTTTATGTATTCAACACCTTTGAGAACCAGACACCAACAAATCCTGAGAAGAAGGATGCACATTCCCCTACTTGGTCTCTTAAGATAATTGGGAGGCTATTGGAAGATGGGAGGGATCCTGTGGTGGCTGGAATGCCACAGAAGTCAAGGGTTAAATTTTCATCCCTCTTCAAGAAAATTACCATATACTTGGACCAAAGCCTCTATCCAGACAACCCTGTGATTTTGTGGGAAAGTGCTCGTTCACCTGCTCTTCATGATGGCTTTGAGGTGAAGAGAAAAGGGGATAAGGAGTTTAGCGCAGTAATACGATTAGAGATGAATTATGTGCCCGAGAAATTTAAACTTTCACCAGCTCTGACTGAAGTTCTGGGAATTGAAACGGAGACTCGGGCAAGAGTTATTGCTGCTATTTGGCATTATGTGAAAGCCCGGAAGTTGCAGAACCCTAACGACCCTACCTTCTTCATGTGTGATCCCCCTCTGCAGAAAGTTTTTGGAGAAGAGAAGATGAAGTTTTCTATGGTTTCACAAAAAATATCAATGCACTTATCTCCTCCGCAGCCTATACATATAGAGCACAAAATGAAACTTTCAGGAAACTGTCCAGCTGGAACTACTTGCTATGATATACTGGTTGATGTACCTACGCCGTTAGAGAAGGAAATGTCGGCATTCTTGGCAAGCACTGAGCGGAACAAAGAAATTGATGCTTGTGATGAATTGATCTGTGCTTCTATAAAAAAAATCCATGAACATCGTCGGCGGCGGGCTTTCTTTCTTGGTTTCAGTCAGTCTCCAGCAGAGTTTATTAATACTCTGATTGCTTCCCAGAGCAAGGACCTAAAGCTTGTTGCTGGAGATGCTAGTCGTAATGCGGAAAAGGAGCGCCGCTCAGATTTCTATAATCAACCCTGGGTTGAGGATGCTGTTATTCGTTACCTGAACCGCAAGTCTGCTGGAAGTGATGCTCCCGGAAGCACTTGA

Protein Analysis

540

Amino Acids

60.15

Weight (kDa)

9.46

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 324 - 396 1.8e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013669)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
Acc36I ACCTGC 1 cut(s) 892
AccB7I CCANNNNNTGG 1 cut(s) 518
AccBSI CCGCTC 2 cut(s) 1330, 1530
AclWI GGATC 3 cut(s) 746, 759, 1106
AcsI RAATTY 3 cut(s) 542, 791, 974
AcuI CTGAAG 1 cut(s) 1020
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 1 cut(s) 1281
AfiI CCNNNNNNNGG 6 cut(s) 56, 187, 344, 518, 708, 1474
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 5 cut(s) 542, 587, 649, 808, 1016
AjnI CCWGG 3 cut(s) 154, 591, 1550
AluBI AGCT 9 cut(s) 230, 269, 275, 436, 446, 469, 992, 1247, 1486
AluI AGCT 9 cut(s) 230, 269, 275, 436, 446, 469, 992, 1247, 1486
Alw21I GWGCWC 2 cut(s) 877, 1218
Alw26I GTCTC 4 cut(s) 285, 717, 1016, 1437
AlwI GGATC 3 cut(s) 746, 759, 1106
AlwNI CAGNNNCTG 2 cut(s) 350, 518
Ama87I CYCGRG 3 cut(s) 65, 968, 1026
AoxI GGCC 3 cut(s) 27, 383, 402
ApeKI GCWGC 5 cut(s) 446, 500, 563, 1043, 1198
ApoI RAATTY 3 cut(s) 542, 791, 974
AseI ATTAAT 1 cut(s) 1449
AspLEI GCGC 3 cut(s) 187, 938, 1527
AspS9I GGNCC 3 cut(s) 413, 829, 1477
AsuC2I CCSGG 5 cut(s) 66, 67, 309, 1069, 1611
AsuHPI GGTGA 4 cut(s) 312, 873, 919, 978
AvaI CYCGRG 3 cut(s) 65, 968, 1026
AvaII GGWCC 3 cut(s) 413, 829, 1477
BaeGI GKGCMC 2 cut(s) 162, 969
BamHI GGATCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 877, 1218
BbvI GCAGC 5 cut(s) 433, 487, 550, 1030, 1210
BccI CCATC 2 cut(s) 737, 890
BceAI ACGGC 1 cut(s) 1273
BciT130I CCWGG 3 cut(s) 156, 593, 1552
BcnI CCSGG 5 cut(s) 66, 67, 309, 1069, 1611
BcoDI GTCTC 4 cut(s) 285, 717, 1016, 1437
BfaI CTAG 1 cut(s) 1503
BfmI CTRYAG 1 cut(s) 1121
BfoI RGCGCY 1 cut(s) 1528
BfrI CTTAAG 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 892
BlpI GCTNAGC 1 cut(s) 354
Bme1390I CCNGG 8 cut(s) 66, 67, 156, 309, 593, 1069, 1552, 1611
Bme18I GGWCC 3 cut(s) 413, 829, 1477
BmeT110I CYCGRG 3 cut(s) 65, 968, 1026
BmgT120I GGNCC 3 cut(s) 413, 829, 1477
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 8 cut(s) 66, 67, 156, 309, 593, 1069, 1552, 1611
BmsI GCATC 9 cut(s) 115, 152, 550, 618, 682, 1336, 1489, 1552, 1594
BplI GAGNNNNNCTC 2 cut(s) 1514, 1546
BpmI CTGGAG 3 cut(s) 426, 1419, 1515
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 3 cut(s) 114, 255, 372
BpuMI CCSGG 5 cut(s) 66, 67, 309, 1069, 1611
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 5 cut(s) 65, 66, 155, 1550, 1551
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 187, 344, 518, 708, 1474
Bse1I ACTGG 2 cut(s) 303, 1275
BseBI CCWGG 3 cut(s) 156, 593, 1552
BseDI CCNNGG 5 cut(s) 65, 66, 155, 1550, 1551
BseGI GGATG 3 cut(s) 697, 797, 1567
BseLI CCNNNNNNNGG 6 cut(s) 56, 187, 344, 518, 708, 1474
BseMII CTCAG 7 cut(s) 165, 290, 413, 545, 672, 1317, 1545
BseNI ACTGG 2 cut(s) 303, 1275
BseRI GAGGAG 1 cut(s) 1182
BseSI GKGCMC 2 cut(s) 162, 969
BseXI GCAGC 5 cut(s) 433, 487, 550, 1030, 1210
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 3 cut(s) 29, 385, 404
BsiHKAI GWGCWC 2 cut(s) 877, 1218
BsiHKCI CYCGRG 3 cut(s) 65, 968, 1026
BsiSI CCGG 4 cut(s) 66, 308, 1069, 1611
BslI CCNNNNNNNGG 6 cut(s) 56, 187, 344, 518, 708, 1474
BsmAI GTCTC 4 cut(s) 285, 717, 1016, 1437
BsmI GAATGC 3 cut(s) 220, 774, 1310
BsnI GGCC 3 cut(s) 29, 385, 404
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 3 cut(s) 65, 968, 1026
Bsp1286I GDGCHC 5 cut(s) 162, 180, 877, 969, 1218
Bsp143I GATC 3 cut(s) 751, 1111, 1362
Bsp1720I GCTNAGC 1 cut(s) 354
BspANI GGCC 3 cut(s) 29, 385, 404
BspCNI CTCAG 7 cut(s) 166, 289, 412, 544, 673, 1318, 1544
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 753
BspMAI CTGCAG 1 cut(s) 1125
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 3 cut(s) 746, 759, 1106
BspQI GCTCTTC 1 cut(s) 894
BspTI CTTAAG 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 717
BsrBI CCGCTC 2 cut(s) 1330, 1530
BsrI ACTGG 2 cut(s) 303, 1275
BssECI CCNNGG 5 cut(s) 65, 66, 155, 1550, 1551
BssMI GATC 3 cut(s) 751, 1111, 1362
BssSI CACGAG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 3 cut(s) 156, 593, 1552
Bst4CI ACNGT 3 cut(s) 207, 420, 1241
Bst6I CTCTTC 4 cut(s) 809, 894, 905, 1134
BstAFI CTTAAG 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 5 cut(s) 189, 267, 360, 1321, 1407
BstDEI CTNAG 8 cut(s) 174, 276, 354, 399, 531, 681, 1326, 1531
BstF5I GGATG 3 cut(s) 697, 797, 1567
BstH2I RGCGCY 1 cut(s) 1528
BstHHI GCGC 3 cut(s) 187, 938, 1527
BstKTI GATC 3 cut(s) 754, 1114, 1365
BstMAI GTCTC 4 cut(s) 285, 717, 1016, 1437
BstMBI GATC 3 cut(s) 751, 1111, 1362
BstMWI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 359, 569, 1316, 1499
BstNI CCWGG 3 cut(s) 156, 593, 1552
BstSCI CCNGG 8 cut(s) 64, 65, 154, 307, 591, 1067, 1550, 1609
BstSFI CTRYAG 1 cut(s) 1121
BstSLI GKGCMC 2 cut(s) 162, 969
BstV1I GCAGC 5 cut(s) 433, 487, 550, 1030, 1210
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 2 cut(s) 37, 826
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 3 cut(s) 29, 385, 404
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 3 cut(s) 697, 797, 1567
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 416, 1323
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 5 cut(s) 189, 267, 360, 1321, 1407
CaiI CAGNNNCTG 2 cut(s) 350, 518
CciI TCATGA 1 cut(s) 892
CfoI GCGC 3 cut(s) 187, 938, 1527
Cfr13I GGNCC 3 cut(s) 413, 829, 1477
Cfr9I CCCGGG 1 cut(s) 65
Csp6I GTAC 1 cut(s) 1280
CviAII CATG 5 cut(s) 248, 430, 893, 1105, 1388
CviQI GTAC 1 cut(s) 1280
DdeI CTNAG 8 cut(s) 174, 276, 354, 399, 531, 681, 1326, 1531
DpnI GATC 3 cut(s) 753, 1113, 1364
DpnII GATC 3 cut(s) 751, 1111, 1362
DraI TTTAAA 2 cut(s) 424, 979
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 4 cut(s) 809, 894, 905, 1134
EarI CTCTTC 4 cut(s) 809, 894, 905, 1134
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 3 cut(s) 413, 829, 1477
Eco57I CTGAAG 1 cut(s) 1020
Eco88I CYCGRG 3 cut(s) 65, 968, 1026
EcoO109I RGGNCCY 1 cut(s) 1477
EcoRII CCWGG 3 cut(s) 154, 591, 1550
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 5 cut(s) 251, 433, 896, 1108, 1391
FatI CATG 5 cut(s) 247, 429, 892, 1104, 1387
FauI CCCGC 2 cut(s) 351, 1398
FokI GGATG 3 cut(s) 704, 784, 1574
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 1 cut(s) 1503
GlaI GCGC 3 cut(s) 186, 937, 1526
GsuI CTGGAG 3 cut(s) 426, 1419, 1515
HaeII RGCGCY 1 cut(s) 1528
HaeIII GGCC 3 cut(s) 29, 385, 404
HapII CCGG 4 cut(s) 66, 308, 1069, 1611
HhaI GCGC 3 cut(s) 187, 938, 1527
Hin1II CATG 5 cut(s) 251, 433, 896, 1108, 1391
Hin6I GCGC 3 cut(s) 185, 936, 1525
HinP1I GCGC 3 cut(s) 185, 936, 1525
HindIII AAGCTT 1 cut(s) 1484
HinfI GANTC 3 cut(s) 515, 596, 1024
HpaII CCGG 4 cut(s) 66, 308, 1069, 1611
HphI GGTGA 4 cut(s) 312, 873, 919, 978
Hpy166II GTNNAC 2 cut(s) 416, 881
Hpy188I TCNGA 5 cut(s) 175, 624, 996, 1458, 1534
Hpy188III TCNNGA 5 cut(s) 680, 808, 845, 893, 1233
Hpy8I GTNNAC 2 cut(s) 416, 881
Hpy99I CGWCG 1 cut(s) 1401
HpyAV CCTTC 5 cut(s) 387, 574, 682, 1108, 1291
HpyCH4III ACNGT 3 cut(s) 207, 420, 1241
HpyCH4V TGCA 8 cut(s) 143, 197, 265, 503, 695, 1078, 1123, 1183
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 359, 569, 1316, 1499
HpyF3I CTNAG 8 cut(s) 174, 276, 354, 399, 531, 681, 1326, 1531
Hsp92II CATG 5 cut(s) 251, 433, 896, 1108, 1391
HspAI GCGC 3 cut(s) 185, 936, 1525
Kzo9I GATC 3 cut(s) 751, 1111, 1362
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 3 cut(s) 433, 1522, 1612
Lsp1109I GCAGC 5 cut(s) 433, 487, 550, 1030, 1210
LweI GCATC 9 cut(s) 115, 152, 550, 618, 682, 1336, 1489, 1552, 1594
MaeI CTAG 1 cut(s) 1503
MaeIII GTNAC 2 cut(s) 318, 1574
MalI GATC 3 cut(s) 753, 1113, 1364
MbiI CCGCTC 2 cut(s) 1330, 1530
MboI GATC 3 cut(s) 751, 1111, 1362
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 5 cut(s) 162, 180, 877, 969, 1218
MlyI GAGTC 2 cut(s) 524, 1018
MseI TTAA 7 cut(s) 93, 423, 603, 717, 789, 978, 1449
MslI CAYNNNNRTG 1 cut(s) 604
MspA1I CMGCKG 2 cut(s) 446, 1247
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 4 cut(s) 66, 308, 1069, 1611
MspR9I CCNGG 8 cut(s) 66, 67, 156, 309, 593, 1069, 1552, 1611
Mva1269I GAATGC 3 cut(s) 220, 774, 1310
MvaI CCWGG 3 cut(s) 156, 593, 1552
MwoI GCNNNNNNNGC 7 cut(s) 140, 184, 248, 359, 569, 1316, 1499
NciI CCSGG 5 cut(s) 66, 67, 309, 1069, 1611
NdeII GATC 3 cut(s) 751, 1111, 1362
NlaIII CATG 5 cut(s) 251, 433, 896, 1108, 1391
NlaIV GGNNCC 1 cut(s) 753
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 318
PagI TCATGA 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 892
PasI CCCWGGG 1 cut(s) 1551
PciSI GCTCTTC 1 cut(s) 894
PctI GAATGC 3 cut(s) 220, 774, 1310
PfeI GAWTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 518
PfoI TCCNGGA 2 cut(s) 591, 1609
PleI GAGTC 2 cut(s) 523, 1018
PpsI GAGTC 2 cut(s) 523, 1018
PpuMI RGGWCCY 1 cut(s) 1477
PshBI ATTAAT 1 cut(s) 1449
Psp5II RGGWCCY 1 cut(s) 1477
Psp6I CCWGG 3 cut(s) 154, 591, 1550
PspGI CCWGG 3 cut(s) 154, 591, 1550
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 3 cut(s) 413, 829, 1477
PspPPI RGGWCCY 1 cut(s) 1477
PstI CTGCAG 1 cut(s) 1125
PstNI CAGNNNCTG 2 cut(s) 350, 518
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 2 cut(s) 446, 1247
RsaI GTAC 1 cut(s) 1281
RsaNI GTAC 1 cut(s) 1280
RseI CAYNNNNRTG 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 7 cut(s) 93, 423, 603, 717, 789, 978, 1449
Sau3AI GATC 3 cut(s) 751, 1111, 1362
Sau96I GGNCC 3 cut(s) 413, 829, 1477
SchI GAGTC 2 cut(s) 524, 1018
ScrFI CCNGG 8 cut(s) 66, 67, 156, 309, 593, 1069, 1552, 1611
SduI GDGCHC 5 cut(s) 162, 180, 877, 969, 1218
SfaNI GCATC 9 cut(s) 115, 152, 550, 618, 682, 1336, 1489, 1552, 1594
SfcI CTRYAG 1 cut(s) 1121
SinI GGWCC 3 cut(s) 413, 829, 1477
SmaI CCCGGG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 4 cut(s) 129, 270, 387, 716
SmoI CTYRAG 4 cut(s) 129, 270, 387, 716
SspMI CTAG 1 cut(s) 1503
StyD4I CCNGG 8 cut(s) 64, 65, 154, 307, 591, 1067, 1550, 1609
TaaI ACNGT 3 cut(s) 207, 420, 1241
TaqI TCGA 1 cut(s) 634
TauI GCSGC 6 cut(s) 49, 79, 106, 245, 1405, 1530
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 7 cut(s) 93, 423, 603, 717, 789, 978, 1449
Tru9I TTAA 7 cut(s) 93, 423, 603, 717, 789, 978, 1449
TscAI CASTG 3 cut(s) 48, 423, 1330
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 5 cut(s) 446, 500, 563, 1043, 1198
Tsp45I GTSAC 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 1034
TspMI CCCGGG 1 cut(s) 65
TspRI CASTG 3 cut(s) 48, 423, 1330
Van91I CCANNNNNTGG 1 cut(s) 518
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 3 cut(s) 413, 829, 1477
VspI ATTAAT 1 cut(s) 1449
XapI RAATTY 3 cut(s) 542, 791, 974
XmaI CCCGGG 1 cut(s) 65
XspI CTAG 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.