RLG00000004539

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
60120283 .. 60122410
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004539

Sequence Viewer

Length: 1617 bp
ATGAATAATAATAATAATAATAATAATCAGGCCAAGAATGTGGCAGTGCCGCCCCATTTTGGCAATCCCGGGCCTGTGCCGCAATCTATGACCATTAACCACCAGCCGCATCTTCTCTCTCAAACACAACCTCAAGCACAAGGTGCATCACATTTTCCGGGGCACTTTCAGTTGTCCGAGCCCCAAGCACAGGCACAGTATGTGAATGCTCATGCACCAACTCAAAATCCAGCCGCCCATGCCCAATTTGTTCAGTTGCAAGCTCAAGCTCAGTCTCTTGCCCAATTGCATAATGCCAGTCCGGGTGTTTCCTCACCCTCCATAGCAACGCCAAGCACGGGAACTGCCAAGCGGGCTAACCAGAAGCCACCTTCTCGGCCTCAAGGTTCATCTCAGGCCAATACAGGTCCACTGTTTAAAAACATGGAGCTTACTCCAGCTGCTCGTAGAAAGAAGCGAAAGCTACCTGATAAACAGATACCAGATAAAGTGGCTGCACTTCTGCCAGAGTCTGGTCTATATACTCAGTTGCTTGAATTTGAGGCTCGTGTTGATGCTGCTTTGGCAAGAAAGAAGGTTGACATCCAGGAGTCACTTAAATGCCCTCCCCGTGTTCAGAAGACGCTTCGAGTTTATGTATTCAACACCTTTGAGAACCAGACACCAACAAATCCTGAGAAGAAAGATGCACATTCCCCTACTTGGTCTCTTAAGATAATTGGGAGGCTATTGGAAGATGGGAGGGATCCTGTGGTGGCTGGAATGCCACAGAAGTCAAGGGTTAAATTTTCATCCCTCTTCAAGAAAATTACCATATACTTGGACCAAAGCCTCTATCCAGACAACCCTGTGATTTTGTGGGAAAGTGCTCGTTCACCTGCTCTTCATGATGGCTTTGAGGTGAAGAGAAAAGGGGATAAGGAGTTTAGTGCAGTAATACGATTAGAGATGAATTATGTGCCTGAGAAATTTAAACTTTCACCAGCTCTGACTGAAGTTCTGGGAATTGAAACGGAGACTCGGGCAAGAGTTATTGCTGCTATTTGGCATTATGTGAAAGCCCGGAAGTTGCAGAACCCAAACGACCCTACCTTCTTCATGTGTGATCCCTCTCTGCAGAAAGTTTTTGGAGAAGAGAAGATGAAGTTTTCTATGGTTTCACAAAAAATATCAATGCACTTATCTCCTCCACAGCCTATACATATAGAGCACAAAATGAAACTTTCAGGAAACTGTCCAGCTGGAACTACTTGCTATGATATACTGGTTGATGTACCTACGCCATTAGAGAAGGAAATGTCTGCATTCTTGGCAAGCACTGAGAGGAACAAAGAGATTGATGCTTGTGATGAATTGATCTGTGCTTCTATAAAAAAAATCCATGAACATCGTCGGCGGCGGGCTTTCTTTCTTGGTTTCAGTCAGTCTCCAGCAGAGTTTATTAATACTCTGATTGCTTCCCAGAGCAAGGACCTAAAGCTTGTTGCTGGAGATGCTAGTCGTAATGCGGAAAAGGAGCGCCGCTCAGATTTCTATAATCAACCCTGGGTTGAGGATGCTGTAATTCGTTACCTGAACCGCAAGTCTGCTGGAAGTGATGCTCCTGGAAGCACTTGA

Protein Analysis

539

Amino Acids

59.94

Weight (kDa)

9.46

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 322 - 394 1.4e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013669)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 886
Acc36I ACCTGC 1 cut(s) 886
AccB7I CCANNNNNTGG 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 1524
AclWI GGATC 3 cut(s) 740, 753, 1100
AcsI RAATTY 3 cut(s) 536, 785, 968
AcuI CTGAAG 1 cut(s) 1014
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 1 cut(s) 1275
AfiI CCNNNNNNNGG 6 cut(s) 59, 190, 338, 512, 702, 1468
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 4 cut(s) 536, 643, 802, 1010
AjnI CCWGG 3 cut(s) 585, 1544, 1603
AluBI AGCT 8 cut(s) 263, 269, 430, 440, 463, 986, 1241, 1480
AluI AGCT 8 cut(s) 263, 269, 430, 440, 463, 986, 1241, 1480
Alw21I GWGCWC 2 cut(s) 871, 1212
Alw26I GTCTC 4 cut(s) 279, 711, 1010, 1431
AlwI GGATC 3 cut(s) 740, 753, 1100
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 2 cut(s) 68, 1020
AoxI GGCC 4 cut(s) 30, 71, 377, 396
ApeKI GCWGC 4 cut(s) 440, 494, 557, 1037
ApoI RAATTY 3 cut(s) 536, 785, 968
AseI ATTAAT 1 cut(s) 1443
AspLEI GCGC 1 cut(s) 1521
AspS9I GGNCC 4 cut(s) 71, 407, 823, 1471
AsuC2I CCSGG 5 cut(s) 69, 70, 159, 303, 1063
AsuHPI GGTGA 4 cut(s) 306, 867, 913, 972
AvaI CYCGRG 2 cut(s) 68, 1020
AvaII GGWCC 3 cut(s) 407, 823, 1471
BaeGI GKGCMC 1 cut(s) 165
BamHI GGATCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 2 cut(s) 871, 1212
BbvI GCAGC 4 cut(s) 427, 481, 544, 1024
BccI CCATC 2 cut(s) 731, 884
BciT130I CCWGG 3 cut(s) 587, 1546, 1605
BcnI CCSGG 5 cut(s) 69, 70, 159, 303, 1063
BcoDI GTCTC 4 cut(s) 279, 711, 1010, 1431
BfaI CTAG 1 cut(s) 1497
BfmI CTRYAG 1 cut(s) 1115
BfoI RGCGCY 1 cut(s) 1522
BfrI CTTAAG 1 cut(s) 710
BfuAI ACCTGC 1 cut(s) 886
BglI GCCNNNNNGGC 1 cut(s) 353
Bme1390I CCNGG 8 cut(s) 69, 70, 159, 303, 587, 1063, 1546, 1605
Bme18I GGWCC 3 cut(s) 407, 823, 1471
BmeT110I CYCGRG 2 cut(s) 68, 1020
BmgT120I GGNCC 4 cut(s) 71, 407, 823, 1471
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 8 cut(s) 69, 70, 159, 303, 587, 1063, 1546, 1605
BmsI GCATC 8 cut(s) 118, 155, 544, 676, 1330, 1483, 1546, 1588
BpiI GAAGAC 1 cut(s) 626
BplI GAGNNNNNCTC 2 cut(s) 1508, 1540
BpmI CTGGAG 3 cut(s) 420, 1413, 1509
BpuEI CTTGAG 3 cut(s) 117, 249, 366
BpuMI CCSGG 5 cut(s) 69, 70, 159, 303, 1063
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 4 cut(s) 68, 158, 1544, 1545
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 190, 338, 512, 702, 1468
Bse1I ACTGG 2 cut(s) 297, 1269
BseBI CCWGG 3 cut(s) 587, 1546, 1605
BseDI CCNNGG 4 cut(s) 68, 158, 1544, 1545
BseGI GGATG 3 cut(s) 582, 791, 1561
BseLI CCNNNNNNNGG 6 cut(s) 59, 190, 338, 512, 702, 1468
BseMII CTCAG 7 cut(s) 284, 407, 539, 666, 954, 1311, 1539
BseNI ACTGG 2 cut(s) 297, 1269
BseRI GAGGAG 1 cut(s) 1176
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 4 cut(s) 427, 481, 544, 1024
BsgI GTGCAG 2 cut(s) 480, 951
BshFI GGCC 4 cut(s) 32, 73, 379, 398
BsiHKAI GWGCWC 2 cut(s) 871, 1212
BsiHKCI CYCGRG 2 cut(s) 68, 1020
BsiSI CCGG 4 cut(s) 69, 158, 302, 1063
BslI CCNNNNNNNGG 6 cut(s) 59, 190, 338, 512, 702, 1468
BsmAI GTCTC 4 cut(s) 279, 711, 1010, 1431
BsmI GAATGC 3 cut(s) 211, 768, 1304
BsnI GGCC 4 cut(s) 32, 73, 379, 398
Bso31I GGTCTC 1 cut(s) 711
BsoBI CYCGRG 2 cut(s) 68, 1020
Bsp1286I GDGCHC 4 cut(s) 165, 183, 871, 1212
Bsp143I GATC 3 cut(s) 745, 1105, 1356
BspANI GGCC 4 cut(s) 32, 73, 379, 398
BspCNI CTCAG 7 cut(s) 283, 406, 538, 667, 955, 1312, 1538
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 1 cut(s) 747
BspMAI CTGCAG 1 cut(s) 1119
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 3 cut(s) 740, 753, 1100
BspQI GCTCTTC 1 cut(s) 888
BspTI CTTAAG 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 711
BsrBI CCGCTC 1 cut(s) 1524
BsrI ACTGG 2 cut(s) 297, 1269
BssECI CCNNGG 4 cut(s) 68, 158, 1544, 1545
BssMI GATC 3 cut(s) 745, 1105, 1356
BssSI CACGAG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 587, 1546, 1605
Bst4CI ACNGT 3 cut(s) 198, 414, 1235
Bst6I CTCTTC 4 cut(s) 803, 888, 899, 1128
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 4 cut(s) 261, 354, 1315, 1401
BstDEI CTNAG 7 cut(s) 270, 393, 525, 675, 963, 1320, 1525
BstF5I GGATG 3 cut(s) 582, 791, 1561
BstH2I RGCGCY 1 cut(s) 1522
BstHHI GCGC 1 cut(s) 1521
BstKTI GATC 3 cut(s) 748, 1108, 1359
BstMAI GTCTC 4 cut(s) 279, 711, 1010, 1431
BstMBI GATC 3 cut(s) 745, 1105, 1356
BstMWI GCNNNNNNNGC 7 cut(s) 79, 143, 239, 353, 563, 1310, 1493
BstNI CCWGG 3 cut(s) 587, 1546, 1605
BstSCI CCNGG 8 cut(s) 67, 68, 157, 301, 585, 1061, 1544, 1603
BstSFI CTRYAG 1 cut(s) 1115
BstSLI GKGCMC 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 427, 481, 544, 1024
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 2 cut(s) 40, 820
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 4 cut(s) 32, 73, 379, 398
BtsCI GGATG 3 cut(s) 582, 791, 1561
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 410, 1317
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 4 cut(s) 261, 354, 1315, 1401
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 886
CfoI GCGC 1 cut(s) 1521
Cfr13I GGNCC 4 cut(s) 71, 407, 823, 1471
Cfr9I CCCGGG 1 cut(s) 68
CseI GACGC 1 cut(s) 631
Csp6I GTAC 1 cut(s) 1274
CviAII CATG 6 cut(s) 212, 239, 424, 887, 1099, 1382
CviQI GTAC 1 cut(s) 1274
DdeI CTNAG 7 cut(s) 270, 393, 525, 675, 963, 1320, 1525
DpnI GATC 3 cut(s) 747, 1107, 1358
DpnII GATC 3 cut(s) 745, 1105, 1356
DraI TTTAAA 2 cut(s) 418, 973
DraIII CACNNNGTG 1 cut(s) 143
Eam1104I CTCTTC 4 cut(s) 803, 888, 899, 1128
EarI CTCTTC 4 cut(s) 803, 888, 899, 1128
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 407, 823, 1471
Eco57I CTGAAG 1 cut(s) 1014
Eco88I CYCGRG 2 cut(s) 68, 1020
EcoO109I RGGNCCY 1 cut(s) 1471
EcoRII CCWGG 3 cut(s) 585, 1544, 1603
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 6 cut(s) 215, 242, 427, 890, 1102, 1385
FatI CATG 6 cut(s) 211, 238, 423, 886, 1098, 1381
FauI CCCGC 2 cut(s) 345, 1392
FokI GGATG 3 cut(s) 569, 778, 1568
FriOI GRGCYC 1 cut(s) 183
FspBI CTAG 1 cut(s) 1497
GlaI GCGC 1 cut(s) 1520
GsuI CTGGAG 3 cut(s) 420, 1413, 1509
HaeII RGCGCY 1 cut(s) 1522
HaeIII GGCC 4 cut(s) 32, 73, 379, 398
HapII CCGG 4 cut(s) 69, 158, 302, 1063
HgaI GACGC 1 cut(s) 631
HhaI GCGC 1 cut(s) 1521
Hin1II CATG 6 cut(s) 215, 242, 427, 890, 1102, 1385
Hin6I GCGC 1 cut(s) 1519
HinP1I GCGC 1 cut(s) 1519
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 1478
HinfI GANTC 3 cut(s) 509, 590, 1018
HpaII CCGG 4 cut(s) 69, 158, 302, 1063
HphI GGTGA 4 cut(s) 306, 867, 913, 972
Hpy166II GTNNAC 3 cut(s) 410, 580, 875
Hpy188I TCNGA 5 cut(s) 178, 618, 990, 1452, 1528
Hpy188III TCNNGA 5 cut(s) 674, 802, 839, 887, 1227
Hpy8I GTNNAC 3 cut(s) 410, 580, 875
Hpy99I CGWCG 1 cut(s) 1395
HpyAV CCTTC 4 cut(s) 381, 568, 1102, 1285
HpyCH4III ACNGT 3 cut(s) 198, 414, 1235
HpyF10VI GCNNNNNNNGC 7 cut(s) 79, 143, 239, 353, 563, 1310, 1493
HpyF3I CTNAG 7 cut(s) 270, 393, 525, 675, 963, 1320, 1525
Hsp92II CATG 6 cut(s) 215, 242, 427, 890, 1102, 1385
HspAI GCGC 1 cut(s) 1519
Kzo9I GATC 3 cut(s) 745, 1105, 1356
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 3 cut(s) 427, 1516, 1606
Lsp1109I GCAGC 4 cut(s) 427, 481, 544, 1024
LweI GCATC 8 cut(s) 118, 155, 544, 676, 1330, 1483, 1546, 1588
MaeI CTAG 1 cut(s) 1497
MaeIII GTNAC 2 cut(s) 591, 1568
MalI GATC 3 cut(s) 747, 1107, 1358
MbiI CCGCTC 1 cut(s) 1524
MboI GATC 3 cut(s) 745, 1105, 1356
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 4 cut(s) 165, 183, 871, 1212
MlyI GAGTC 3 cut(s) 518, 599, 1012
MseI TTAA 7 cut(s) 96, 417, 597, 711, 783, 972, 1443
MslI CAYNNNNRTG 1 cut(s) 598
MspA1I CMGCKG 2 cut(s) 440, 1241
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 4 cut(s) 69, 158, 302, 1063
MspR9I CCNGG 8 cut(s) 69, 70, 159, 303, 587, 1063, 1546, 1605
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 3 cut(s) 211, 768, 1304
MvaI CCWGG 3 cut(s) 587, 1546, 1605
MwoI GCNNNNNNNGC 7 cut(s) 79, 143, 239, 353, 563, 1310, 1493
NciI CCSGG 5 cut(s) 69, 70, 159, 303, 1063
NdeII GATC 3 cut(s) 745, 1105, 1356
NlaIII CATG 6 cut(s) 215, 242, 427, 890, 1102, 1385
NlaIV GGNNCC 1 cut(s) 747
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 591
PagI TCATGA 1 cut(s) 886
PaqCI CACCTGC 1 cut(s) 886
PasI CCCWGGG 1 cut(s) 1545
PciSI GCTCTTC 1 cut(s) 888
PctI GAATGC 3 cut(s) 211, 768, 1304
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 2 cut(s) 585, 1603
PleI GAGTC 3 cut(s) 517, 598, 1012
PpsI GAGTC 3 cut(s) 517, 598, 1012
PpuMI RGGWCCY 1 cut(s) 1471
PshBI ATTAAT 1 cut(s) 1443
Psp5II RGGWCCY 1 cut(s) 1471
Psp6I CCWGG 3 cut(s) 585, 1544, 1603
PspGI CCWGG 3 cut(s) 585, 1544, 1603
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 4 cut(s) 71, 407, 823, 1471
PspPPI RGGWCCY 1 cut(s) 1471
PstI CTGCAG 1 cut(s) 1119
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 745
PvuII CAGCTG 2 cut(s) 440, 1241
RsaI GTAC 1 cut(s) 1275
RsaNI GTAC 1 cut(s) 1274
RseI CAYNNNNRTG 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 7 cut(s) 96, 417, 597, 711, 783, 972, 1443
Sau3AI GATC 3 cut(s) 745, 1105, 1356
Sau96I GGNCC 4 cut(s) 71, 407, 823, 1471
SchI GAGTC 3 cut(s) 518, 599, 1012
ScrFI CCNGG 8 cut(s) 69, 70, 159, 303, 587, 1063, 1546, 1605
SduI GDGCHC 4 cut(s) 165, 183, 871, 1212
SfaNI GCATC 8 cut(s) 118, 155, 544, 676, 1330, 1483, 1546, 1588
SfcI CTRYAG 1 cut(s) 1115
SinI GGWCC 3 cut(s) 407, 823, 1471
SmaI CCCGGG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 598
SmlI CTYRAG 4 cut(s) 132, 264, 381, 710
SmoI CTYRAG 4 cut(s) 132, 264, 381, 710
SspMI CTAG 1 cut(s) 1497
StyD4I CCNGG 8 cut(s) 67, 68, 157, 301, 585, 1061, 1544, 1603
TaaI ACNGT 3 cut(s) 198, 414, 1235
TaqI TCGA 1 cut(s) 628
TauI GCSGC 6 cut(s) 52, 82, 109, 236, 1399, 1524
Tru1I TTAA 7 cut(s) 96, 417, 597, 711, 783, 972, 1443
Tru9I TTAA 7 cut(s) 96, 417, 597, 711, 783, 972, 1443
TscAI CASTG 3 cut(s) 51, 417, 1324
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 4 cut(s) 440, 494, 557, 1037
Tsp45I GTSAC 1 cut(s) 591
TspGWI ACGGA 1 cut(s) 1028
TspMI CCCGGG 1 cut(s) 68
TspRI CASTG 3 cut(s) 51, 417, 1324
Van91I CCANNNNNTGG 1 cut(s) 512
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 407, 823, 1471
VspI ATTAAT 1 cut(s) 1443
XapI RAATTY 3 cut(s) 536, 785, 968
XmaI CCCGGG 1 cut(s) 68
XspI CTAG 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.