Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000038.1

Orthogroup ID

OG0013669

Physical Location & Seq

Genomic Coordinates Forward (+)

7046 .. 9178

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000038.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

atgaataataataataataatcaggccaagaatgtggcagtgccgccccattttggcaatcccggggctgtgccgcaatctattcccattaaccaccagccgcatcttctctctcaaacacaacctcaagcacaaggtgcatcgcattttcctgggcactttcagttgtctgagccccaagcgcaggcacttgcacaggcacagtatgtgaatgctcatgcacaagctcaaaatcaagctgcccatgcccaatttcagttgcaagctcaagctcagtctcttgcccaattacataatgccagtccgggtgtttcgtcaccctccatagcaacgccaagcacgggaactgctaagcgggctaaccagaagccaccttctcggcctcaaggttcatctcaggccaatacaggtccactgtttaaaaacatggagcttactccagctgctcgtagaaaaaagcgaaagctacctgataaacagataccagataaagtggctgcacttctgccagagtctggtctatatactcagttgcttgaatttgaggctcgtgttgatgctgctttggcaagaaagaaggttgaaatccaggaatcacttaaatgtcctccccgtgttcagaagatgcttcgagtttatgtattcaacacctttgagaaccagacaccaacaaatcctgagaagaaggatgcacattcccctacttggtctcttaagataattgggaggctattggaagatgggagggatcctgtggtggctggaatgccacagaagtcaagggttaaattttcatccctcttcaagaaaattaccatatacttggaccaaagcctctatccagacaaccctgtgattttgtgggaaagtgctcgttcacctgctcttcatgatggctttgaggtgaagagaaaaggggataaggagtttagcgcagtaatacgattagagatgaattatgtgcccgagaaatttaaactttcaccagctctgactgaagttctgggaattgaaacggagactcgggcaagagttattgctgctatttggcattatgtgaaagcccggaagttgcagaaccctaacgaccctaccttcttcatgtgtgatccccctctgcagaaagtttttggagaagagaagatgaagttttctatggtttcacaaaaaatatcaatgcacttatctcctccacagcctatacatatagagcacaaaatgaaactttcaggaaactgtccagctggaactacttgctatgatatactggttgatgtacctacgccgttagagaaggaaatgtcggcattcttggcaagcactgagcggaacaaagaaattgatgcttgtgatgaattgatctgtgcttctataaaaaaaatccatgaacatcgtcggcggcgggctttctttcttggtttcagtcagtctccagcagagtttattaatactctgattgcttcccagagcaaggacctaaagcttgttgctggagatgctagtcgtaatgcggaaaaggagcgccgctcagatttctataatcaaccctgggttgaggatgctgttattcgttacctgaaccgcaagtctgctggaagtgatgctcccggaagcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

539

Amino Acids

60.03

Weight (kDa)

9.46

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08160 FvH4_5g08160 FvH4_5g08160
malus_domestica	MD06G1143000.v1.1 MD14G1158200.v1.1
prunus_persica	Prupe.5G152300_v2.0.a1 Prupe.5G152300_v2.0.a1
pyrus_communis	pycom06g13280 pycom14g13180
rosa_chinensis	RchiOBHm_Chr7g0190351
rosa_laevigata	RLG00000004539
rosa_multiflora	Rmu_ssc0000038.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264700
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109800 Rh7BG112400 Rh7DG112800
rosa_wichuraiana	Rw7G009530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	889
Acc36I	ACCTGC	1 cut(s)	889
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccBSI	CCGCTC	2 cut(s)	1327, 1527
AclWI	GGATC	3 cut(s)	743, 756, 1103
AcsI	RAATTY	3 cut(s)	539, 788, 971
AcuI	CTGAAG	1 cut(s)	1017
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	1278
AfiI	CCNNNNNNNGG	6 cut(s)	53, 184, 341, 515, 705, 1471
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	5 cut(s)	539, 584, 646, 805, 1013
AjnI	CCWGG	3 cut(s)	151, 588, 1547
Alw21I	GWGCWC	2 cut(s)	874, 1215
Alw26I	GTCTC	4 cut(s)	282, 714, 1013, 1434
AlwI	GGATC	3 cut(s)	743, 756, 1103
AlwNI	CAGNNNCTG	1 cut(s)	515
Ama87I	CYCGRG	3 cut(s)	62, 965, 1023
AoxI	GGCC	3 cut(s)	24, 380, 399
ApeKI	GCWGC	5 cut(s)	239, 443, 497, 560, 1040
ApoI	RAATTY	3 cut(s)	539, 788, 971
AseI	ATTAAT	1 cut(s)	1446
AspLEI	GCGC	3 cut(s)	184, 935, 1524
AspS9I	GGNCC	3 cut(s)	410, 826, 1474
AsuC2I	CCSGG	5 cut(s)	63, 64, 306, 1066, 1608
AsuHPI	GGTGA	4 cut(s)	309, 870, 916, 975
AvaI	CYCGRG	3 cut(s)	62, 965, 1023
AvaII	GGWCC	3 cut(s)	410, 826, 1474
BaeGI	GKGCMC	2 cut(s)	159, 966
BamHI	GGATCC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	874, 1215
BbvI	GCAGC	5 cut(s)	226, 430, 484, 547, 1027
BccI	CCATC	2 cut(s)	734, 887
BceAI	ACGGC	1 cut(s)	1270
BciT130I	CCWGG	3 cut(s)	153, 590, 1549
BcnI	CCSGG	5 cut(s)	63, 64, 306, 1066, 1608
BcoDI	GTCTC	4 cut(s)	282, 714, 1013, 1434
BfaI	CTAG	1 cut(s)	1500
BfmI	CTRYAG	1 cut(s)	1118
BfoI	RGCGCY	1 cut(s)	1525
BfrI	CTTAAG	1 cut(s)	713
BfuAI	ACCTGC	1 cut(s)	889
BlpI	GCTNAGC	1 cut(s)	351
Bme1390I	CCNGG	8 cut(s)	63, 64, 153, 306, 590, 1066, 1549, 1608
Bme18I	GGWCC	3 cut(s)	410, 826, 1474
BmeT110I	CYCGRG	3 cut(s)	62, 965, 1023
BmgT120I	GGNCC	3 cut(s)	410, 826, 1474
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	8 cut(s)	63, 64, 153, 306, 590, 1066, 1549, 1608
BmsI	GCATC	9 cut(s)	112, 149, 547, 615, 679, 1333, 1486, 1549, 1591
BplI	GAGNNNNNCTC	2 cut(s)	1511, 1543
BpmI	CTGGAG	3 cut(s)	423, 1416, 1512
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	3 cut(s)	111, 252, 369
BpuMI	CCSGG	5 cut(s)	63, 64, 306, 1066, 1608
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	5 cut(s)	62, 63, 152, 1547, 1548
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 184, 341, 515, 705, 1471
Bse1I	ACTGG	2 cut(s)	300, 1272
BseBI	CCWGG	3 cut(s)	153, 590, 1549
BseDI	CCNNGG	5 cut(s)	62, 63, 152, 1547, 1548
BseGI	GGATG	3 cut(s)	694, 794, 1564
BseLI	CCNNNNNNNGG	6 cut(s)	53, 184, 341, 515, 705, 1471
BseMII	CTCAG	7 cut(s)	162, 287, 410, 542, 669, 1314, 1542
BseNI	ACTGG	2 cut(s)	300, 1272
BseRI	GAGGAG	1 cut(s)	1179
BseSI	GKGCMC	2 cut(s)	159, 966
BseXI	GCAGC	5 cut(s)	226, 430, 484, 547, 1027
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	26, 382, 401
BsiHKAI	GWGCWC	2 cut(s)	874, 1215
BsiHKCI	CYCGRG	3 cut(s)	62, 965, 1023
BsiSI	CCGG	4 cut(s)	63, 305, 1066, 1608
BslI	CCNNNNNNNGG	6 cut(s)	53, 184, 341, 515, 705, 1471
BsmAI	GTCTC	4 cut(s)	282, 714, 1013, 1434
BsmI	GAATGC	3 cut(s)	217, 771, 1307
BsnI	GGCC	3 cut(s)	26, 382, 401
Bso31I	GGTCTC	1 cut(s)	714
BsoBI	CYCGRG	3 cut(s)	62, 965, 1023
Bsp1286I	GDGCHC	5 cut(s)	159, 177, 874, 966, 1215
Bsp143I	GATC	3 cut(s)	748, 1108, 1359
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	3 cut(s)	26, 382, 401
BspCNI	CTCAG	7 cut(s)	163, 286, 409, 541, 670, 1315, 1541
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	1 cut(s)	750
BspMAI	CTGCAG	1 cut(s)	1122
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	3 cut(s)	743, 756, 1103
BspQI	GCTCTTC	1 cut(s)	891
BspTI	CTTAAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	714
BsrBI	CCGCTC	2 cut(s)	1327, 1527
BsrI	ACTGG	2 cut(s)	300, 1272
BssECI	CCNNGG	5 cut(s)	62, 63, 152, 1547, 1548
BssMI	GATC	3 cut(s)	748, 1108, 1359
BssSI	CACGAG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	3 cut(s)	153, 590, 1549
Bst4CI	ACNGT	3 cut(s)	204, 417, 1238
Bst6I	CTCTTC	4 cut(s)	806, 891, 902, 1131
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	5 cut(s)	186, 264, 357, 1318, 1404
BstDEI	CTNAG	8 cut(s)	171, 273, 351, 396, 528, 678, 1323, 1528
BstF5I	GGATG	3 cut(s)	694, 794, 1564
BstH2I	RGCGCY	1 cut(s)	1525
BstHHI	GCGC	3 cut(s)	184, 935, 1524
BstKTI	GATC	3 cut(s)	751, 1111, 1362
BstMAI	GTCTC	4 cut(s)	282, 714, 1013, 1434
BstMBI	GATC	3 cut(s)	748, 1108, 1359
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 181, 245, 356, 566, 1313, 1496
BstNI	CCWGG	3 cut(s)	153, 590, 1549
BstSCI	CCNGG	8 cut(s)	61, 62, 151, 304, 588, 1064, 1547, 1606
BstSFI	CTRYAG	1 cut(s)	1118
BstSLI	GKGCMC	2 cut(s)	159, 966
BstV1I	GCAGC	5 cut(s)	226, 430, 484, 547, 1027
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	2 cut(s)	34, 823
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	26, 382, 401
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	694, 794, 1564
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	45, 413, 1320
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	5 cut(s)	186, 264, 357, 1318, 1404
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	3 cut(s)	184, 935, 1524
Cfr13I	GGNCC	3 cut(s)	410, 826, 1474
Cfr9I	CCCGGG	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	1277
CviAII	CATG	6 cut(s)	218, 245, 427, 890, 1102, 1385
CviQI	GTAC	1 cut(s)	1277
DdeI	CTNAG	8 cut(s)	171, 273, 351, 396, 528, 678, 1323, 1528
DpnI	GATC	3 cut(s)	750, 1110, 1361
DpnII	GATC	3 cut(s)	748, 1108, 1359
DraI	TTTAAA	2 cut(s)	421, 976
DraIII	CACNNNGTG	1 cut(s)	137
Eam1104I	CTCTTC	4 cut(s)	806, 891, 902, 1131
EarI	CTCTTC	4 cut(s)	806, 891, 902, 1131
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	3 cut(s)	410, 826, 1474
Eco57I	CTGAAG	1 cut(s)	1017
Eco88I	CYCGRG	3 cut(s)	62, 965, 1023
EcoO109I	RGGNCCY	1 cut(s)	1474
EcoRII	CCWGG	3 cut(s)	151, 588, 1547
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	6 cut(s)	221, 248, 430, 893, 1105, 1388
FatI	CATG	6 cut(s)	217, 244, 426, 889, 1101, 1384
FauI	CCCGC	2 cut(s)	348, 1395
FokI	GGATG	3 cut(s)	701, 781, 1571
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	1500
GlaI	GCGC	3 cut(s)	183, 934, 1523
GsuI	CTGGAG	3 cut(s)	423, 1416, 1512
HaeII	RGCGCY	1 cut(s)	1525
HaeIII	GGCC	3 cut(s)	26, 382, 401
HapII	CCGG	4 cut(s)	63, 305, 1066, 1608
HhaI	GCGC	3 cut(s)	184, 935, 1524
Hin1II	CATG	6 cut(s)	221, 248, 430, 893, 1105, 1388
Hin6I	GCGC	3 cut(s)	182, 933, 1522
HinP1I	GCGC	3 cut(s)	182, 933, 1522
HindIII	AAGCTT	1 cut(s)	1481
HinfI	GANTC	3 cut(s)	512, 593, 1021
HpaII	CCGG	4 cut(s)	63, 305, 1066, 1608
HphI	GGTGA	4 cut(s)	309, 870, 916, 975
Hpy166II	GTNNAC	2 cut(s)	413, 878
Hpy188I	TCNGA	5 cut(s)	172, 621, 993, 1455, 1531
Hpy188III	TCNNGA	5 cut(s)	677, 805, 842, 890, 1230
Hpy8I	GTNNAC	2 cut(s)	413, 878
Hpy99I	CGWCG	1 cut(s)	1398
HpyAV	CCTTC	5 cut(s)	384, 571, 679, 1105, 1288
HpyCH4III	ACNGT	3 cut(s)	204, 417, 1238
HpyCH4V	TGCA	9 cut(s)	140, 194, 221, 262, 500, 692, 1075, 1120, 1180
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 181, 245, 356, 566, 1313, 1496
HpyF3I	CTNAG	8 cut(s)	171, 273, 351, 396, 528, 678, 1323, 1528
Hsp92II	CATG	6 cut(s)	221, 248, 430, 893, 1105, 1388
HspAI	GCGC	3 cut(s)	182, 933, 1522
Kzo9I	GATC	3 cut(s)	748, 1108, 1359
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	3 cut(s)	430, 1519, 1609
Lsp1109I	GCAGC	5 cut(s)	226, 430, 484, 547, 1027
LweI	GCATC	9 cut(s)	112, 149, 547, 615, 679, 1333, 1486, 1549, 1591
MaeI	CTAG	1 cut(s)	1500
MaeIII	GTNAC	2 cut(s)	315, 1571
MalI	GATC	3 cut(s)	750, 1110, 1361
MbiI	CCGCTC	2 cut(s)	1327, 1527
MboI	GATC	3 cut(s)	748, 1108, 1359
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	5 cut(s)	159, 177, 874, 966, 1215
MlyI	GAGTC	2 cut(s)	521, 1015
MseI	TTAA	7 cut(s)	90, 420, 600, 714, 786, 975, 1446
MslI	CAYNNNNRTG	1 cut(s)	601
MspA1I	CMGCKG	2 cut(s)	443, 1244
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	4 cut(s)	63, 305, 1066, 1608
MspR9I	CCNGG	8 cut(s)	63, 64, 153, 306, 590, 1066, 1549, 1608
Mva1269I	GAATGC	3 cut(s)	217, 771, 1307
MvaI	CCWGG	3 cut(s)	153, 590, 1549
MwoI	GCNNNNNNNGC	7 cut(s)	137, 181, 245, 356, 566, 1313, 1496
NciI	CCSGG	5 cut(s)	63, 64, 306, 1066, 1608
NdeII	GATC	3 cut(s)	748, 1108, 1359
NlaIII	CATG	6 cut(s)	221, 248, 430, 893, 1105, 1388
NlaIV	GGNNCC	1 cut(s)	750
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	315
PagI	TCATGA	1 cut(s)	889
PaqCI	CACCTGC	1 cut(s)	889
PasI	CCCWGGG	1 cut(s)	1548
PciSI	GCTCTTC	1 cut(s)	891
PctI	GAATGC	3 cut(s)	217, 771, 1307
PfeI	GAWTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	515
PfoI	TCCNGGA	2 cut(s)	588, 1606
PleI	GAGTC	2 cut(s)	520, 1015
PpsI	GAGTC	2 cut(s)	520, 1015
PpuMI	RGGWCCY	1 cut(s)	1474
PshBI	ATTAAT	1 cut(s)	1446
Psp5II	RGGWCCY	1 cut(s)	1474
Psp6I	CCWGG	3 cut(s)	151, 588, 1547
PspGI	CCWGG	3 cut(s)	151, 588, 1547
PspN4I	GGNNCC	1 cut(s)	750
PspPI	GGNCC	3 cut(s)	410, 826, 1474
PspPPI	RGGWCCY	1 cut(s)	1474
PstI	CTGCAG	1 cut(s)	1122
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	2 cut(s)	443, 1244
RsaI	GTAC	1 cut(s)	1278
RsaNI	GTAC	1 cut(s)	1277
RseI	CAYNNNNRTG	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	7 cut(s)	90, 420, 600, 714, 786, 975, 1446
Sau3AI	GATC	3 cut(s)	748, 1108, 1359
Sau96I	GGNCC	3 cut(s)	410, 826, 1474
SchI	GAGTC	2 cut(s)	521, 1015
ScrFI	CCNGG	8 cut(s)	63, 64, 153, 306, 590, 1066, 1549, 1608
SduI	GDGCHC	5 cut(s)	159, 177, 874, 966, 1215
SfaNI	GCATC	9 cut(s)	112, 149, 547, 615, 679, 1333, 1486, 1549, 1591
SfcI	CTRYAG	1 cut(s)	1118
SinI	GGWCC	3 cut(s)	410, 826, 1474
SmaI	CCCGGG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	4 cut(s)	126, 267, 384, 713
SmoI	CTYRAG	4 cut(s)	126, 267, 384, 713
SspMI	CTAG	1 cut(s)	1500
StyD4I	CCNGG	8 cut(s)	61, 62, 151, 304, 588, 1064, 1547, 1606
TaaI	ACNGT	3 cut(s)	204, 417, 1238
TaqI	TCGA	1 cut(s)	631
TauI	GCSGC	5 cut(s)	46, 76, 103, 1402, 1527
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	7 cut(s)	90, 420, 600, 714, 786, 975, 1446
Tru9I	TTAA	7 cut(s)	90, 420, 600, 714, 786, 975, 1446
TscAI	CASTG	3 cut(s)	45, 420, 1327
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	5 cut(s)	239, 443, 497, 560, 1040
Tsp45I	GTSAC	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	1031
TspMI	CCCGGG	1 cut(s)	62
TspRI	CASTG	3 cut(s)	45, 420, 1327
Van91I	CCANNNNNTGG	1 cut(s)	515
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	3 cut(s)	410, 826, 1474
VspI	ATTAAT	1 cut(s)	1446
XapI	RAATTY	3 cut(s)	539, 788, 971
XmaI	CCCGGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	1500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.