RchiOBHm_Chr7g0200741
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020594
Physical Location & Seq
Forward (+)
18456137 .. 18456991
855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17970

Sequence Viewer

Length: 855 bp
ATGATGTTGTACTTGTTGGTGGATCTACTAGAATTCCCAAAGTACAACAATTGTTGGAGGATTTTTTCAATGGAAGGATCGGAGCTTTGCAAAAGCATTAATCCTGATGAGGCAGTTGCATATGGTGCAGCTGTACAAGCTGCAATTATGAGCGGTGAAGGTAATATTGAGAAGGTTCAGGATTTACTGCTATTGGATGTCACTCCATTTTCTCTTGGTATAAGAAATTATACAGGAGTTATGGATGTTTTTATCCCAAGAAACACTGCCATCCCCGCCAAGAAAGAAGGATTTTACACAACTTCTTATAGTGTACAAACATATATGACGATTTCTGTGTACGAGGGTGAAAGACCAACACCCAGAGATAACACATTGTTGGGTACATTTAAGCTCTCAGGCATCCGTCCTGCATTAAAGGGAGTGCCGGATATCAGCATTTGTTTTGAGATTGATAATAATGGAATTTTGGTTGTCTCTGCCGAGGAAAAGCTAACGGGAAATAAGAGCAAGATCATAATCACGACAAACTACAGAAACAGGTTATCTAAGGAGGAAATCGAGAGGATGGTCAAGGAGGCAGAGAAGTACAAATTAGAAGACAATGAGTATAAGAAGAAAATAGAGGCTAAGACTGCGTTGGAAAACTATGCATATGACCAGAGGCGAAGAATTTATAATCACTCAAATATCGAACGAGAAGTCATGAAGAAAATTGCGGATGAGGTTGGAAAAGTAATTCACTGGCTTGAGAATGATAACCAACCTTGGACTCTTGAAGAAATTGAGAATAAGATGAAAAAGCTACAAAACGTCTGCAATCCTATATTTGGCGAAGATGTATCAGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

284

Amino Acids

32.48

Weight (kDa)

5.41

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 24 - 277 9.9e-69 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200741 RchiOBHm_Chr7g0200751 RchiOBHm_Chr7g0201191
rosa_rugosa Rorug07G0062300
rosa_samantha Rh7AG189300 Rh7DG191600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 3 cut(s) 153, 276, 719
AclWI GGATC 2 cut(s) 30, 85
AcsI RAATTY 3 cut(s) 32, 465, 672
AfaI GTAC 7 cut(s) 11, 44, 135, 315, 341, 385, 590
AfiI CCNNNNNNNGG 1 cut(s) 830
AgsI TTSAA 2 cut(s) 69, 779
AluBI AGCT 6 cut(s) 85, 131, 140, 394, 493, 805
AluI AGCT 6 cut(s) 85, 131, 140, 394, 493, 805
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 2 cut(s) 30, 85
ApeKI GCWGC 2 cut(s) 128, 140
ApoI RAATTY 3 cut(s) 32, 465, 672
ArsI GACNNNNNNTTYG 2 cut(s) 687, 719
AseI ATTAAT 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 167, 359
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 127, 140
BccI CCATC 2 cut(s) 278, 562
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 532
BisI GCNGC 2 cut(s) 129, 141
BlsI GCNGC 2 cut(s) 130, 142
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 483, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 749
Bse8I GATNNNNATC 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 483, 767
BseGI GGATG 6 cut(s) 202, 250, 270, 402, 573, 727
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 749
BseXI GCAGC 2 cut(s) 127, 140
BsgI GTGCAG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 1 cut(s) 481
Bsp1407I TGTACA 2 cut(s) 133, 313
Bsp143I GATC 3 cut(s) 22, 77, 513
BspACI CCGC 3 cut(s) 153, 276, 719
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 705
BspPI GGATC 2 cut(s) 30, 85
BsrBI CCGCTC 1 cut(s) 153
BsrGI TGTACA 2 cut(s) 133, 313
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 483, 767
BssMI GATC 3 cut(s) 22, 77, 513
BssT1I CCWWGG 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 2 cut(s) 133, 313
BstDEI CTNAG 3 cut(s) 397, 549, 630
BstF5I GGATG 6 cut(s) 202, 250, 270, 402, 573, 727
BstKTI GATC 3 cut(s) 25, 80, 516
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 3 cut(s) 22, 77, 513
BstMWI GCNNNNNNNGC 4 cut(s) 125, 137, 275, 635
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 127, 140
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsCI GGATG 6 cut(s) 202, 250, 270, 402, 573, 727
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 742
CciI TCATGA 1 cut(s) 705
Csp6I GTAC 7 cut(s) 10, 43, 134, 314, 340, 384, 589
CviAII CATG 1 cut(s) 706
CviJI RGCY 8 cut(s) 85, 131, 140, 394, 493, 629, 748, 805
CviKI_1 RGCY 8 cut(s) 85, 131, 140, 394, 493, 629, 748, 805
CviQI GTAC 7 cut(s) 10, 43, 134, 314, 340, 384, 589
DdeI CTNAG 3 cut(s) 397, 549, 630
DpnI GATC 3 cut(s) 24, 79, 515
DpnII GATC 3 cut(s) 22, 77, 513
Eco130I CCWWGG 1 cut(s) 767
Eco32I GATATC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 32
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 767
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 767
FaeI CATG 1 cut(s) 709
FatI CATG 1 cut(s) 705
FauI CCCGC 1 cut(s) 283
FauNDI CATATG 2 cut(s) 121, 655
Fnu4HI GCNGC 2 cut(s) 129, 141
FokI GGATG 6 cut(s) 209, 257, 257, 389, 580, 734
Fsp4HI GCNGC 2 cut(s) 129, 141
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 129, 141
HapII CCGG 1 cut(s) 428
Hin1II CATG 1 cut(s) 709
HinfI GANTC 1 cut(s) 772
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 167, 359
Hpy166II GTNNAC 2 cut(s) 314, 340
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 6 cut(s) 104, 179, 523, 562, 706, 776
Hpy8I GTNNAC 2 cut(s) 314, 340
HpyAV CCTTC 4 cut(s) 68, 152, 166, 281
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 7 cut(s) 90, 119, 128, 143, 413, 653, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 137, 275, 635
HpyF3I CTNAG 3 cut(s) 397, 549, 630
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 1 cut(s) 709
Kzo9I GATC 3 cut(s) 22, 77, 513
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 2 cut(s) 127, 140
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 24, 79, 515
MbiI CCGCTC 1 cut(s) 153
MboI GATC 3 cut(s) 22, 77, 513
MboII GAAGA 6 cut(s) 611, 628, 681, 721, 791, 848
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 1 cut(s) 22
MlyI GAGTC 1 cut(s) 766
MmeI TCCRAC 3 cut(s) 35, 621, 709
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 3 cut(s) 99, 390, 416
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 49
MwoI GCNNNNNNNGC 4 cut(s) 125, 137, 275, 635
NdeI CATATG 2 cut(s) 121, 655
NdeII GATC 3 cut(s) 22, 77, 513
NlaIII CATG 1 cut(s) 709
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 655
PagI TCATGA 1 cut(s) 705
PkrI GCNGC 2 cut(s) 130, 142
PleI GAGTC 1 cut(s) 766
PpsI GAGTC 1 cut(s) 766
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 678
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 7 cut(s) 11, 44, 135, 315, 341, 385, 590
RsaNI GTAC 7 cut(s) 10, 43, 134, 314, 340, 384, 589
SaqAI TTAA 3 cut(s) 99, 390, 416
SatI GCNGC 2 cut(s) 129, 141
Sau3AI GATC 3 cut(s) 22, 77, 513
SchI GAGTC 1 cut(s) 766
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
SsiI CCGC 3 cut(s) 153, 276, 719
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 767
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 561, 693
TatI WGTACW 5 cut(s) 9, 42, 133, 313, 588
Tru1I TTAA 3 cut(s) 99, 390, 416
Tru9I TTAA 3 cut(s) 99, 390, 416
TscAI CASTG 2 cut(s) 271, 749
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 128, 140
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 722, 812
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 271, 749
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 3 cut(s) 32, 465, 672
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.