RchiOBHm_Chr7g0201191
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020594
Physical Location & Seq
Reverse (-)
18863016 .. 18863333
318 bp
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UTR
Exon/CDS
Intron
PRQ18011

Sequence Viewer

Length: 318 bp
ATGAGGGTGAAAGCGCAACAGCCAAAGAGAACAGGTTGTTGGGTACATTTAAGGTCAAAAGGCATCCGTCCTGCTGCAAGGCGAGTTCCTGGGGTTCACATTATATTTGAGATCGATGCTAATGGAATTTTGGTTGTCTCTGCTGAGGAAAAACTAACAGGTAATAAAAGCATTATCACTATCATCAATAGCAACAAAAAAAGGTTATCTAAGGAGGAAATTGAGAAGATGGTCAAGGAGGCAGAGAAATACAAATTAGAAGACCATGAGTACAAGAATAAAATGGCGGCTAAAATTGCATTGGAACACATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

105

Amino Acids

12.05

Weight (kDa)

9.85

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 20 - 104 2e-18 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200741 RchiOBHm_Chr7g0200751 RchiOBHm_Chr7g0201191
rosa_rugosa Rorug07G0062300
rosa_samantha Rh7AG189300 Rh7DG191600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 2 cut(s) 45, 272
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
Alw26I GTCTC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 2 cut(s) 75, 288
BlsI GCNGC 2 cut(s) 76, 289
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 72, 106
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 144, 210
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 1 cut(s) 63
CfoI GCGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 44, 271
CviAII CATG 1 cut(s) 266
CviJI RGCY 2 cut(s) 22, 290
CviKI_1 RGCY 2 cut(s) 22, 290
CviQI GTAC 2 cut(s) 44, 271
DdeI CTNAG 2 cut(s) 144, 210
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 104, 267
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 75, 288
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 75, 288
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 75, 288
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 77, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 144, 210
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 5 cut(s) 18, 75, 84, 102, 144
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 72, 106
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 3 cut(s) 238, 272, 304
MluCI AATT 4 cut(s) 126, 219, 254, 294
MnlI CCTC 3 cut(s) 139, 208, 232
MseI TTAA 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 269
PkrI GCNGC 2 cut(s) 76, 289
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
RsaI GTAC 2 cut(s) 45, 272
RsaNI GTAC 2 cut(s) 44, 271
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 2 cut(s) 75, 288
Sau3AI GATC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 90
SetI ASST 4 cut(s) 37, 56, 163, 206
SfaNI GCATC 2 cut(s) 72, 106
Sse9I AATT 4 cut(s) 126, 219, 254, 294
SsiI CCGC 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 114
TasI AATT 4 cut(s) 126, 219, 254, 294
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.