Rh7AG189300
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0020594
Physical Location & Seq
Reverse (-)
16930281 .. 16930562
282 bp
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UTR
Exon/CDS
Intron
Rh7AG189300.1

Sequence Viewer

Length: 282 bp
ATGAGGGTGAAAGCGCAACAGCCAAAGAGAACAGGTTGTTGGGTACATTTAAGGTCAAAAGGCATCCGTCCTGCTGCAAGGCGAGTTCCTGGGGTTCACGTTATATTTGAGATCGATGCTAATGGAATTTTGGTTGTCTCTGCTGAGGAAAAACTAATAGGTAATAAAAGCATTATCACTATCATCAATAACAACAAAAATAGGTTATCTAAGGAGGAAATTGAGAAGATGGTCAAGGAAGCAGAGAAATACAAATTAGAAGACCAGGAGTACAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

93

Amino Acids

10.7

Weight (kDa)

9.76

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 20 - 92 2e-16 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200741 RchiOBHm_Chr7g0200751 RchiOBHm_Chr7g0201191
rosa_rugosa Rorug07G0062300
rosa_samantha Rh7AG189300 Rh7DG191600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 2 cut(s) 45, 272
AjnI CCWGG 2 cut(s) 88, 264
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
Alw26I GTCTC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 90, 266
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 90, 266
BmrFI CCNGG 2 cut(s) 90, 266
BmsI GCATC 2 cut(s) 72, 106
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 89
BseBI CCWGG 2 cut(s) 90, 266
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 90, 266
BstDEI CTNAG 2 cut(s) 144, 210
BstF5I GGATG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 1 cut(s) 111
BstNI CCWGG 2 cut(s) 90, 266
BstSCI CCNGG 2 cut(s) 88, 264
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 1 cut(s) 63
CfoI GCGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 44, 271
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
CviQI GTAC 2 cut(s) 44, 271
DdeI CTNAG 2 cut(s) 144, 210
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 88, 264
FaiI YATR 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 144, 210
HpySE526I ACGT 1 cut(s) 99
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 18, 75, 84, 102, 251, 278
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 72, 106
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 238, 272
MluCI AATT 4 cut(s) 126, 219, 254, 277
MnlI CCTC 2 cut(s) 139, 208
MseI TTAA 2 cut(s) 50, 280
MspR9I CCNGG 2 cut(s) 90, 266
MvaI CCWGG 2 cut(s) 90, 266
NdeII GATC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 88, 264
PspGI CCWGG 2 cut(s) 88, 264
RsaI GTAC 2 cut(s) 45, 272
RsaNI GTAC 2 cut(s) 44, 271
SaqAI TTAA 2 cut(s) 50, 280
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 90, 266
SetI ASST 5 cut(s) 37, 56, 102, 163, 206
SfaNI GCATC 2 cut(s) 72, 106
Sse9I AATT 4 cut(s) 126, 219, 254, 277
StyD4I CCNGG 2 cut(s) 88, 264
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 114
TasI AATT 4 cut(s) 126, 219, 254, 277
TatI WGTACW 1 cut(s) 270
Tru1I TTAA 2 cut(s) 50, 280
Tru9I TTAA 2 cut(s) 50, 280
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.