RchiOBHm_Chr7g0200751
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020594
Physical Location & Seq
Forward (+)
18466642 .. 18467172
531 bp
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UTR
Exon/CDS
Intron
PRQ17971

Sequence Viewer

Length: 531 bp
ATGATGATTTCTGTGTACGAGGGTGAAAGACCAACAGCCAAACGTAACACATTGTTGGGTACATTTGAGCTCTCAGGCATCCGTCCTGCATTAAGGGGAGTGCCGGATATCAGCATTTGTTTTGAGATTGATAATAATGGAATTTTGGTTGTCTCTGCCGAGGAAAAGCTGACGGGAAATAAGAGCAAGATCATAATCACGACAAACTACAGAAACAGGTTATCTAAGGAGGAAATCGAGAGGATGGTCAAGGAGGCAGAGAAGTACAAATTAGAAGATAATGAGTATAAGAAGAAAATGGAGGCTAAGACTGCGTTGGAAAACTATGCATATGACCAGAGGCGAAGAATTTATAAGCACTCAAATATTGAACCAGAAGTCATGAAGAAAATTGCGGATGAGGTTGGAAAAGTAATTCACTGGCTTGAGAATGATAACCAACCTTTGAGTCTTGAAGAAATTGAGAATAAGATGAAAAAGCTACAAAACGTCTGCAATCCTATATTTGGCGAAGATGTATCAGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

176

Amino Acids

20.33

Weight (kDa)

6.23

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 169 9.4e-38 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200741 RchiOBHm_Chr7g0200751 RchiOBHm_Chr7g0201191
rosa_rugosa Rorug07G0062300
rosa_samantha Rh7AG189300 Rh7DG191600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AciI CCGC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 141, 348
AfaI GTAC 3 cut(s) 17, 61, 266
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 2 cut(s) 371, 455
AluBI AGCT 3 cut(s) 70, 169, 481
AluI AGCT 3 cut(s) 70, 169, 481
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 141, 348
AsuHPI GGTGA 1 cut(s) 35
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 208
BmsI GCATC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 3 cut(s) 78, 249, 403
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 73, 225, 306
BstF5I GGATG 3 cut(s) 78, 249, 403
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 208
BtsCI GGATG 3 cut(s) 78, 249, 403
BtsIMutI CAGTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 381
Csp6I GTAC 3 cut(s) 16, 60, 265
CviAII CATG 1 cut(s) 382
CviJI RGCY 6 cut(s) 38, 70, 169, 305, 424, 481
CviKI_1 RGCY 6 cut(s) 38, 70, 169, 305, 424, 481
CviQI GTAC 3 cut(s) 16, 60, 265
DdeI CTNAG 3 cut(s) 73, 225, 306
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoRV GATATC 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 1 cut(s) 385
FaiI YATR 8 cut(s) 194, 288, 327, 331, 333, 354, 383, 503
FatI CATG 1 cut(s) 381
FauNDI CATATG 1 cut(s) 331
FokI GGATG 3 cut(s) 65, 256, 410
FriOI GRGCYC 1 cut(s) 72
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 385
HinfI GANTC 1 cut(s) 448
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 199, 238, 382, 452
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 43, 489
HpyCH4V TGCA 3 cut(s) 89, 329, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 73, 225, 306
HpySE526I ACGT 2 cut(s) 43, 489
Hsp92II CATG 1 cut(s) 385
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 60, 99, 117, 202, 350, 387, 406, 507
LweI GCATC 1 cut(s) 87
MaeII ACGT 2 cut(s) 43, 489
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 6 cut(s) 287, 304, 357, 397, 467, 524
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 6 cut(s) 141, 269, 348, 390, 414, 459
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 2 cut(s) 297, 385
MnlI CCTC 8 cut(s) 13, 154, 223, 234, 247, 295, 333, 394
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 1 cut(s) 92
MspI CCGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeI CATATG 1 cut(s) 331
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 385
NmeAIII GCCGAG 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 331
PagI TCATGA 1 cut(s) 381
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
PsiI TTATAA 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 72
RsaI GTAC 3 cut(s) 17, 61, 266
RsaNI GTAC 3 cut(s) 16, 60, 265
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 1 cut(s) 457
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 46, 72, 171, 221, 405, 445, 483, 492
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 6 cut(s) 141, 269, 348, 390, 414, 459
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 367
SstI GAGCTC 1 cut(s) 72
TaiI ACGT 2 cut(s) 46, 492
TaqI TCGA 1 cut(s) 237
TasI AATT 6 cut(s) 141, 269, 348, 390, 414, 459
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 398, 488
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 425
XapI RAATTY 2 cut(s) 141, 348
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.