RchiOBHm_Chr7g0225351

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
47962910 .. 47974873
11964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20182

Sequence Viewer

Length: 1983 bp
ATGGGGCAGGGAAGCTCCAAAGAAGACACTGGTGTTTCTTCAGCTTCAGAGTCGTCCTCCAAAGCAGGAGGAGGAGGAGGAGGAGGAGGATCCAGTCGGTCTCGCCTGAAGCAGCGACTGCACCGTCGGCGTCACCGGAGTCGCTCCAATTCGTCGTCACATCACAAATGCCTCGCCGCCGAGGATTTCGTCGGAATCGCTCTCCTCACTCTCGTTCGAGCTGAAATGAAGTTCAAGGACAAGTGGCTGGCCTGTCTTTCCTTTGGAGAGCAAACCTTTCGTACACAGATCTCTGATCAAACCGACAAACCTGTTTGGAATTCTGCAAAGAAGCTTTGTCTGGACAAAAATGGGCCTCGTTTTGCAAGGATCTCAGTGTATGAGACGAATAAAATGTATAAGAACACTCTGATAGGATTTTGTGAGATTGATCTACTTGAATTTCTAACCAGGGAATTAGAATCCGATTCCAGTTCCGAGTGTGAGACATTGAACCTGTTAGATCCATCATCACCAGACAAAGTCGTGGGAGAAATATCTGTTTCAATATCTGTTGAGGACCCTATTGAAACAGAAAAGAGTTTTGCAAGACGCATTTTATCCATAGTGGACTACAATGAAGATGGACACCTTTCATTGTCTGAATTTTCTGACTTAATTACTGCTTTTGGGAATCAAGTGGCAGCGAACAAGAAAGAGGAGATGTTTAAAGCAGCTGACAAGAACGGGGATGGTGTTGTTAGCATGGATGAGTTGGCTGACCTTCTTGCCATTCAACAAGAAAAGGAACCAATAATCAATTGCTGTCCTGTTTGTGGCGAGACTCTTGAAGATTCTGATACGCTGAACCACATGATTCATTTGACCCTATGTTTTGATGAAGGAACTGGAAAACAGGTTATGACTGGAGGATTTTTGACAGATAAACAGGCTAATTATGGGTGGATGTTTAAGCTTAGTGAATGGGCCCATTTTTCATCCTATGACATTGGTTTAAACTCTGGATCAAGTAGTTCCCATATTCTGGTATTTGATCGGAGGACAAAGAGACTTGTGGAAGAATTGATAGATGGAAAGATTGTCTTGTCAATGAGAGCCATTTACCAGTCAAAGCTAGGGCATGGCCTTCTGGATACAGGGGCTAAGGAGCTCTTGCAGAACATCTCTGAAAAGCAAGGGAGGAAAATGAACTCTCTGGAATCTGCTAAAGATATACCAAAATTTGTCGAATTTTTTAAGGATCAACTCAATTTGGCTGAAATGAAGTACCCTTTGGAACATTTTAAGACATTCAATCAATTTTTTGTGAGAGAGTTAAAGCCTGGTGCAAGACCAGTTGCCTGCCCAGAACGTGATGATGTTGCCGTCTGTGGTGCAGATAGCCGTCTTACAGCATTCAGTTCTGTTGATGACAGTCTAAGATTTTGGATTAAGGGTCGGAAGTTTTCAGTTCAAGGACTTCTGGGGAAAGATATTTGTTCCAGTGCTTTTATTGAAGGAACATTGGTTATCTTTCGTTTGGCACCACAGGATTATCATCGTTTTCATAGTCCTGTTTCTGGAACTGTTGAGCAGTTTGTAAATATACCTGGATGCCTATATACGGTTAACCCTATTGCTGTTAATAGCAAGTATTGTAATGTCTTCACTGAGAATAAGCGAGTAGTATCAATTATATCAACGACAGAGTTTGGAAAGGTGGCTTTTGTTGCAATCGGTGCAACAATGGTTGGCAGCATTACCTTTTTAAAGAAGGAGGGAGACCATGTTGAGAAAGGAGATGAGTTTGGATATTTCTCGTTTGGTGGAAGCACTGTGATTTGTGTTTTCGAAAAGGATGCGATTGAGATAGATGAGGATCTCTTAGCAAATAGTTCCCGATCACTAGAGACCTTGGTTTCTGTTGGGATGAAGTTGGGTGTGTCAAAAAAACAAGCCAACATTGGGTTGCCAGACTTACATAACTGTGTGTTGCAAGATTGA

Protein Analysis

660

Amino Acids

72.99

Weight (kDa)

5.79

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 196 - 255 6.8e-08 EF-hand domain pair
PS_Dcarbxylase PF02666 431 - 626 8e-60 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 1522
AccB7I CCANNNNNTGG 1 cut(s) 1024
AciI CCGC 1 cut(s) 177
AclWI GGATC 7 cut(s) 84, 97, 377, 497, 1012, 1248, 1866
AcsI RAATTY 5 cut(s) 319, 440, 644, 1220, 1229
AcuI CTGAAG 3 cut(s) 24, 30, 128
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 2 cut(s) 283, 1268
AfiI CCNNNNNNNGG 5 cut(s) 815, 1024, 1559, 1603, 1944
AjnI CCWGG 3 cut(s) 449, 1321, 1588
AjuI GAANNNNNNNTTGG 2 cut(s) 1256, 1288
AluBI AGCT 8 cut(s) 15, 44, 221, 334, 716, 955, 1114, 1150
AluI AGCT 8 cut(s) 15, 44, 221, 334, 716, 955, 1114, 1150
Alw21I GWGCWC 1 cut(s) 1152
Alw26I GTCTC 7 cut(s) 105, 377, 479, 815, 1042, 1755, 1883
AlwI GGATC 7 cut(s) 84, 97, 377, 497, 1012, 1248, 1866
AlwNI CAGNNNCTG 1 cut(s) 118
AoxI GGCC 4 cut(s) 249, 353, 966, 1123
ApaI GGGCCC 1 cut(s) 970
ApeKI GCWGC 4 cut(s) 112, 683, 713, 1734
ApoI RAATTY 5 cut(s) 319, 440, 644, 1220, 1229
AspS9I GGNCC 4 cut(s) 353, 559, 966, 967
AsuHPI GGTGA 2 cut(s) 125, 504
AsuII TTCGAA 1 cut(s) 1830
AvaII GGWCC 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 970
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 1522
BanII GRGCYC 2 cut(s) 970, 1152
BbsI GAAGAC 2 cut(s) 30, 1636
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 4 cut(s) 124, 695, 725, 1746
BccI CCATC 4 cut(s) 514, 617, 725, 1064
BceAI ACGGC 2 cut(s) 1349, 1368
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 1820, 1854
BciT130I CCWGG 3 cut(s) 451, 1323, 1590
BciVI GTATCC 1 cut(s) 1126
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 7 cut(s) 105, 377, 479, 815, 1042, 1755, 1883
BfaI CTAG 2 cut(s) 1115, 1886
BfuI GTATCC 1 cut(s) 1126
BglII AGATCT 1 cut(s) 288
BisI GCNGC 5 cut(s) 113, 177, 684, 714, 1735
BlsI GCNGC 5 cut(s) 114, 178, 685, 715, 1736
Bme1390I CCNGG 3 cut(s) 451, 1323, 1590
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 4 cut(s) 353, 559, 966, 967
BmiI GGNNCC 5 cut(s) 91, 561, 789, 968, 1524
BmrFI CCNGG 3 cut(s) 451, 1323, 1590
BmsI GCATC 2 cut(s) 1583, 1828
BpiI GAAGAC 2 cut(s) 30, 1636
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 927
Bpu10I CCTNAGC 1 cut(s) 1143
Bpu14I TTCGAA 1 cut(s) 1830
BsaBI GATNNNNATC 2 cut(s) 1536, 1857
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 3 cut(s) 105, 1755, 1883
BsaJI CCNNGG 3 cut(s) 180, 450, 1893
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 1752, 1782
Bsc4I CCNNNNNNNGG 5 cut(s) 815, 1024, 1559, 1603, 1944
Bse1I ACTGG 8 cut(s) 34, 93, 471, 892, 910, 1105, 1334, 1482
Bse8I GATNNNNATC 2 cut(s) 1536, 1857
BseBI CCWGG 3 cut(s) 451, 1323, 1590
BseDI CCNNGG 3 cut(s) 180, 450, 1893
BseGI GGATG 7 cut(s) 736, 754, 951, 977, 1598, 1843, 1914
BseJI GATNNNNATC 2 cut(s) 1536, 1857
BseLI CCNNNNNNNGG 5 cut(s) 815, 1024, 1559, 1603, 1944
BseMII CTCAG 2 cut(s) 387, 1641
BseNI ACTGG 8 cut(s) 34, 93, 471, 892, 910, 1105, 1334, 1482
BseRI GAGGAG 8 cut(s) 84, 87, 90, 93, 96, 99, 194, 713
BseSI GKGCMC 1 cut(s) 970
BseXI GCAGC 4 cut(s) 124, 695, 725, 1746
BsgI GTGCAG 2 cut(s) 104, 1395
BshFI GGCC 4 cut(s) 251, 355, 968, 1125
BshNI GGYRCC 1 cut(s) 1522
BsiHKAI GWGCWC 1 cut(s) 1152
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 5 cut(s) 815, 1024, 1559, 1603, 1944
BsmAI GTCTC 7 cut(s) 105, 377, 479, 815, 1042, 1755, 1883
BsmBI CGTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 1394
BsnI GGCC 4 cut(s) 251, 355, 968, 1125
Bso31I GGTCTC 3 cut(s) 105, 1755, 1883
Bsp119I TTCGAA 1 cut(s) 1830
Bsp120I GGGCCC 1 cut(s) 966
Bsp1286I GDGCHC 2 cut(s) 970, 1152
BspACI CCGC 1 cut(s) 177
BspANI GGCC 4 cut(s) 251, 355, 968, 1125
BspCNI CTCAG 2 cut(s) 386, 1642
BspLI GGNNCC 5 cut(s) 91, 561, 789, 968, 1524
BspPI GGATC 7 cut(s) 84, 97, 377, 497, 1012, 1248, 1866
BspT104I TTCGAA 1 cut(s) 1830
BspT107I GGYRCC 1 cut(s) 1522
BspTNI GGTCTC 3 cut(s) 105, 1755, 1883
BsrI ACTGG 8 cut(s) 34, 93, 471, 892, 910, 1105, 1334, 1482
BssECI CCNNGG 3 cut(s) 180, 450, 1893
BssNI GRCGYC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 1893
Bst2UI CCWGG 3 cut(s) 451, 1323, 1590
Bst4CI ACNGT 6 cut(s) 125, 1415, 1567, 1606, 1816, 1967
BstACI GRCGYC 1 cut(s) 130
BstAPI GCANNNNNTGC 2 cut(s) 118, 1718
BstBI TTCGAA 1 cut(s) 1830
BstC8I GCNNGC 2 cut(s) 249, 1342
BstDEI CTNAG 6 cut(s) 373, 956, 1143, 1418, 1650, 1864
BstF5I GGATG 7 cut(s) 736, 754, 951, 977, 1598, 1843, 1914
BstMAI GTCTC 7 cut(s) 105, 377, 479, 815, 1042, 1755, 1883
BstMWI GCNNNNNNNGC 4 cut(s) 118, 127, 1709, 1718
BstNI CCWGG 3 cut(s) 451, 1323, 1590
BstSCI CCNGG 3 cut(s) 449, 1321, 1588
BstSLI GKGCMC 1 cut(s) 970
BstV1I GCAGC 4 cut(s) 124, 695, 725, 1746
BstV2I GAAGAC 2 cut(s) 30, 1636
BstX2I RGATCY 5 cut(s) 89, 288, 369, 502, 1858
BstYI RGATCY 5 cut(s) 89, 288, 369, 502, 1858
BsuI GTATCC 1 cut(s) 1126
BsuRI GGCC 4 cut(s) 251, 355, 968, 1125
BtsCI GGATG 7 cut(s) 736, 754, 951, 977, 1598, 1843, 1914
BtsIMutI CAGTG 5 cut(s) 27, 381, 1489, 1647, 1812
Cac8I GCNNGC 2 cut(s) 249, 1342
CaiI CAGNNNCTG 1 cut(s) 118
Cfr13I GGNCC 4 cut(s) 353, 559, 966, 967
CseI GACGC 2 cut(s) 119, 600
Csp6I GTAC 2 cut(s) 282, 1267
CviAII CATG 4 cut(s) 745, 853, 1121, 1766
CviQI GTAC 2 cut(s) 282, 1267
DdeI CTNAG 6 cut(s) 373, 956, 1143, 1418, 1650, 1864
DraI TTTAAA 3 cut(s) 709, 996, 1749
DrdI GACNNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 1150
Eco130I CCWWGG 1 cut(s) 1893
Eco24I GRGCYC 2 cut(s) 970, 1152
Eco31I GGTCTC 3 cut(s) 105, 1755, 1883
Eco47I GGWCC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 1150
Eco57I CTGAAG 3 cut(s) 24, 30, 128
EcoICRI GAGCTC 1 cut(s) 1150
EcoO109I RGGNCCY 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 449, 1321, 1588
EcoT14I CCWWGG 1 cut(s) 1893
EcoT38I GRGCYC 2 cut(s) 970, 1152
ErhI CCWWGG 1 cut(s) 1893
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 4 cut(s) 748, 856, 1124, 1769
FalI AAGNNNNNCTT 4 cut(s) 1067, 1099, 1136, 1168
FatI CATG 4 cut(s) 744, 852, 1120, 1765
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 113, 177, 684, 714, 1735
FokI GGATG 7 cut(s) 743, 761, 958, 964, 1605, 1850, 1921
FriOI GRGCYC 2 cut(s) 970, 1152
Fsp4HI GCNGC 5 cut(s) 113, 177, 684, 714, 1735
FspBI CTAG 2 cut(s) 1115, 1886
GluI GCNGC 5 cut(s) 113, 177, 684, 714, 1735
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 4 cut(s) 251, 355, 968, 1125
HapII CCGG 1 cut(s) 136
HgaI GACGC 2 cut(s) 119, 600
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 4 cut(s) 748, 856, 1124, 1769
HincII GTYRAC 1 cut(s) 1609
HindII GTYRAC 1 cut(s) 1609
HindIII AAGCTT 2 cut(s) 332, 953
HpaI GTTAAC 1 cut(s) 1609
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 125, 504
Hpy166II GTNNAC 3 cut(s) 284, 610, 1609
Hpy188III TCNNGA 7 cut(s) 341, 827, 1002, 1130, 1196, 1560, 1878
Hpy8I GTNNAC 3 cut(s) 284, 610, 1609
Hpy99I CGWCG 3 cut(s) 129, 157, 194
HpyAV CCTTC 5 cut(s) 773, 875, 1136, 1490, 1747
HpyCH4III ACNGT 6 cut(s) 125, 1415, 1567, 1606, 1816, 1967
HpyCH4IV ACGT 1 cut(s) 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 127, 1709, 1718
HpyF3I CTNAG 6 cut(s) 373, 956, 1143, 1418, 1650, 1864
HpySE526I ACGT 1 cut(s) 1351
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 4 cut(s) 748, 856, 1124, 1769
Ksp22I TGATCA 1 cut(s) 295
KspAI GTTAAC 1 cut(s) 1609
LmnI GCTCC 3 cut(s) 20, 149, 1147
Lsp1109I GCAGC 4 cut(s) 124, 695, 725, 1746
LweI GCATC 2 cut(s) 1583, 1828
MaeI CTAG 2 cut(s) 1115, 1886
MaeII ACGT 1 cut(s) 1351
MaeIII GTNAC 2 cut(s) 131, 156
MboII GAAGA 6 cut(s) 30, 35, 632, 842, 1070, 1636
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 5 cut(s) 89, 288, 369, 502, 1858
MhlI GDGCHC 2 cut(s) 970, 1152
MlyI GAGTC 3 cut(s) 59, 148, 817
MmeI TCCRAC 2 cut(s) 172, 1418
MslI CAYNNNNRTG 1 cut(s) 1965
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 3 cut(s) 451, 1323, 1590
MssI GTTTAAAC 1 cut(s) 996
MunI CAATTG 1 cut(s) 799
Mva1269I GAATGC 1 cut(s) 1394
MvaI CCWGG 3 cut(s) 451, 1323, 1590
MwoI GCNNNNNNNGC 4 cut(s) 118, 127, 1709, 1718
NlaIII CATG 4 cut(s) 748, 856, 1124, 1769
NlaIV GGNNCC 5 cut(s) 91, 561, 789, 968, 1524
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 131, 156
NspV TTCGAA 1 cut(s) 1830
PctI GAATGC 1 cut(s) 1394
PfeI GAWTC 7 cut(s) 195, 461, 467, 673, 833, 856, 1199
PflFI GACNNNGTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 5 cut(s) 114, 178, 685, 715, 1736
PleI GAGTC 3 cut(s) 58, 147, 817
PmeI GTTTAAAC 1 cut(s) 996
PpsI GAGTC 3 cut(s) 58, 147, 817
PpuMI RGGWCCY 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 1152
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 3 cut(s) 449, 1321, 1588
PspGI CCWGG 3 cut(s) 449, 1321, 1588
PspN4I GGNNCC 5 cut(s) 91, 561, 789, 968, 1524
PspOMI GGGCCC 1 cut(s) 966
PspPI GGNCC 4 cut(s) 353, 559, 966, 967
PspPPI RGGWCCY 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 5 cut(s) 89, 288, 369, 502, 1858
PsyI GACNNNGTC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 283, 1268
RsaNI GTAC 2 cut(s) 282, 1267
RseI CAYNNNNRTG 1 cut(s) 1965
SacI GAGCTC 1 cut(s) 1152
SatI GCNGC 5 cut(s) 113, 177, 684, 714, 1735
Sau96I GGNCC 4 cut(s) 353, 559, 966, 967
SchI GAGTC 3 cut(s) 59, 148, 817
ScrFI CCNGG 3 cut(s) 451, 1323, 1590
SduI GDGCHC 2 cut(s) 970, 1152
SfaNI GCATC 2 cut(s) 1583, 1828
SfuI TTCGAA 1 cut(s) 1830
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 1965
SsiI CCGC 1 cut(s) 177
SspMI CTAG 2 cut(s) 1115, 1886
SstI GAGCTC 1 cut(s) 1152
StyD4I CCNGG 3 cut(s) 449, 1321, 1588
StyI CCWWGG 1 cut(s) 1893
TaaI ACNGT 6 cut(s) 125, 1415, 1567, 1606, 1816, 1967
TaiI ACGT 1 cut(s) 1354
TaqI TCGA 3 cut(s) 217, 1227, 1830
TaqII GACCGA 1 cut(s) 87
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 7 cut(s) 195, 461, 467, 673, 833, 856, 1199
TscAI CASTG 5 cut(s) 34, 381, 1489, 1654, 1819
TseFI GTSAC 2 cut(s) 131, 156
TseI GCWGC 4 cut(s) 112, 683, 713, 1734
Tsp45I GTSAC 2 cut(s) 131, 156
TspRI CASTG 5 cut(s) 34, 381, 1489, 1654, 1819
Tth111I GACNNNGTC 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 1024
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 5 cut(s) 319, 440, 644, 1220, 1229
XspI CTAG 2 cut(s) 1115, 1886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.