Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009518.1

Orthogroup ID

OG0007731

Physical Location & Seq

Genomic Coordinates Forward (+)

55039 .. 64988

Gene Structure 9950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009518.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atggggcaggaaagctccaaagaagacactggtgtttcttcagcttcagagtcgtcctccaaagcaggaggcggaggaggatcccgtcggtctcgcctgaagcagcgactgcaccgtcggcgtcaccggagtcgctccaattcgtcgtctcatcacaaatgcctcgccgccgaggatttcgtcggaatcgctctcctcactctcgttcgagctgaaatgaagttcaaggacaagtggctggcttgtctttcctttggagagcaaacctttcgtacacagatctctgatcaaacagacaaacctgtttggaattctgcaaagaagctttgtctggacaaaaatgggcctcgttttgcaaggatctcagtgtatgaggaattagaatccgattccagttccgagtgtgagacattgaacctgttagatccatcatcaccagacaaagtcgtgggagaaatatctgtttcaatatctgttgaggacccaattgaaacagaaaagagttttgcaagacgcattttatccatagtggactacaatgaagatggacacctttcattgtctgaattttctgacttaattactgcttttgggaatcaagtggcagcgaacaagactcttgaagattctgatacgctgaaccacatgattcatttgaccctatgttttgatgaaggaactggaaaacaggttatgactggaggatttttgacagataaacaggctaattatgggtggatgtttaagcttagtgaatgggcccatttttcatcctatgacattggtttaaactctggatcaagtagttcccatattctggtatttgatcggaggacaaagagacttgtggaagaattgatagatggaaagattgtcttgtcaatgagagccatttaccagtcaaagctagggcttggccttctggatacaggggctaaggagctcttgcagaacatctctgaaaagcaagggaggaaaatgaactctctggaatctgctaaagatataccaaaattcgtcgaattttttaaggatcaactcaatttggctgaaatgaagtaccctttggaacattttaagacattcaatcaattttttgtgagagagttaaagcctggtgcaagaccagttgcctgcccagaacgtgatgatgttgcggtctgtggtgcagatagccgtcttacagcattcagttctgttgatgacagtctaagattttggattaagacattcaatcaattttttgtgagagagttaaagcctggtgcaagaccagttgcctgcccagaacgtgatgatgttgcggtctgtggtgcagatagccgtcttacagcattcagttctgttgatgacagtctaagattttggattaaggtaatttctgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004609 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0009705 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

C2 EF-hand_5 EF-hand_8 PS_Dcarbxylase

Protein Analysis

462

Amino Acids

51.68

Weight (kDa)

6.26

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25970 AT5G57190 AT5G57190
fragaria_vesca	FvH4_5g30530 FvH4_5g30530 FvH4_5g30530 FvH4_5g30530 FvH4_5g30530
malus_domestica	MD08G1222700.v1.1
prunus_persica	Prupe.1G560600_v2.0.a1 Prupe.1G560600_v2.0.a1
pyrus_communis	pycom08g19360
rosa_chinensis	RchiOBHm_Chr7g0225351
rosa_laevigata	RLG00000001828
rosa_multiflora	Rmu_sc0000259.1_g000035 Rmu_sc0009518.1_g000016
rosa_roxburghii	Rroxscaffold_3G00233900
rosa_rugosa	Rorug07G0228600 Rorug07G0228700
rosa_samantha	Rh7AG374500 Rh7BG363600 Rh7CG393000 Rh7DG374400
rosa_wichuraiana	Rw7G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	817
AciI	CCGC	4 cut(s)	72, 168, 1157, 1304
AclWI	GGATC	6 cut(s)	75, 88, 368, 419, 805, 1041
AcsI	RAATTY	4 cut(s)	310, 566, 1013, 1022
AcuI	CTGAAG	3 cut(s)	24, 30, 119
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	274, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgsI	TTSAA	7 cut(s)	226, 415, 468, 491, 623, 1087, 1234
AjnI	CCWGG	2 cut(s)	1114, 1261
AjuI	GAANNNNNNNTTGG	2 cut(s)	1049, 1081
AluBI	AGCT	7 cut(s)	15, 44, 212, 325, 748, 907, 943
AluI	AGCT	7 cut(s)	15, 44, 212, 325, 748, 907, 943
Alw21I	GWGCWC	1 cut(s)	945
Alw26I	GTCTC	4 cut(s)	96, 153, 401, 835
AlwI	GGATC	6 cut(s)	75, 88, 368, 419, 805, 1041
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	344, 759, 916
ApaI	GGGCCC	1 cut(s)	763
ApeKI	GCWGC	2 cut(s)	103, 605
ApoI	RAATTY	4 cut(s)	310, 566, 1013, 1022
AspS9I	GGNCC	4 cut(s)	344, 481, 759, 760
AsuHPI	GGTGA	2 cut(s)	116, 426
AvaII	GGWCC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	763, 945
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	945
BbvI	GCAGC	2 cut(s)	115, 617
BccI	CCATC	3 cut(s)	436, 539, 857
BceAI	ACGGC	2 cut(s)	1161, 1308
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	1116, 1263
BciVI	GTATCC	1 cut(s)	919
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	4 cut(s)	96, 153, 401, 835
BfaI	CTAG	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	919
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	3 cut(s)	104, 168, 606
BlsI	GCNGC	3 cut(s)	105, 169, 607
Bme1390I	CCNGG	2 cut(s)	1116, 1263
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	344, 481, 759, 760
BmiI	GGNNCC	3 cut(s)	82, 483, 761
BmrFI	CCNGG	2 cut(s)	1116, 1263
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse1I	ACTGG	7 cut(s)	34, 393, 685, 703, 898, 1127, 1274
BseBI	CCWGG	2 cut(s)	1116, 1263
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	744, 770
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	7 cut(s)	34, 393, 685, 703, 898, 1127, 1274
BseRI	GAGGAG	2 cut(s)	90, 185
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	2 cut(s)	115, 617
BsgI	GTGCAG	3 cut(s)	95, 1188, 1335
BshFI	GGCC	3 cut(s)	346, 761, 918
BsiHKAI	GWGCWC	1 cut(s)	945
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	4 cut(s)	96, 153, 401, 835
BsmBI	CGTCTC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	1187, 1334
BsnI	GGCC	3 cut(s)	346, 761, 918
Bso31I	GGTCTC	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	759
Bsp1286I	GDGCHC	2 cut(s)	763, 945
Bsp143I	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
BspACI	CCGC	4 cut(s)	72, 168, 1157, 1304
BspANI	GGCC	3 cut(s)	346, 761, 918
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	82, 483, 761
BspPI	GGATC	6 cut(s)	75, 88, 368, 419, 805, 1041
BspTNI	GGTCTC	1 cut(s)	96
BsrI	ACTGG	7 cut(s)	34, 393, 685, 703, 898, 1127, 1274
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
BssNI	GRCGYC	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	1116, 1263
Bst4CI	ACNGT	3 cut(s)	116, 1208, 1355
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	240, 1135, 1282
BstDEI	CTNAG	5 cut(s)	364, 749, 936, 1211, 1358
BstF5I	GGATG	2 cut(s)	744, 770
BstKTI	GATC	8 cut(s)	83, 282, 289, 363, 427, 800, 829, 1036
BstMAI	GTCTC	4 cut(s)	96, 153, 401, 835
BstMBI	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 118
BstNI	CCWGG	2 cut(s)	1116, 1263
BstSCI	CCNGG	2 cut(s)	1114, 1261
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	115, 617
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	4 cut(s)	80, 279, 360, 424
BstYI	RGATCY	4 cut(s)	80, 279, 360, 424
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	3 cut(s)	346, 761, 918
BtsCI	GGATG	2 cut(s)	744, 770
BtsIMutI	CAGTG	2 cut(s)	27, 372
Cac8I	GCNNGC	3 cut(s)	240, 1135, 1282
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	344, 481, 759, 760
CseI	GACGC	2 cut(s)	110, 522
Csp6I	GTAC	2 cut(s)	273, 1060
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	2 cut(s)	273, 1060
DdeI	CTNAG	5 cut(s)	364, 749, 936, 1211, 1358
DpnI	GATC	8 cut(s)	82, 281, 288, 362, 426, 799, 828, 1035
DpnII	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
DraI	TTTAAA	1 cut(s)	789
DrdI	GACNNNNNNGTC	1 cut(s)	114
DseDI	GACNNNNNNGTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	943
Eco24I	GRGCYC	2 cut(s)	763, 945
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	943
Eco57I	CTGAAG	3 cut(s)	24, 30, 119
EcoICRI	GAGCTC	1 cut(s)	943
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	1114, 1261
EcoT38I	GRGCYC	2 cut(s)	763, 945
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	649
FaiI	YATR	9 cut(s)	372, 527, 647, 664, 695, 732, 777, 813, 1007
FalI	AAGNNNNNCTT	4 cut(s)	860, 892, 929, 961
FatI	CATG	1 cut(s)	645
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	104, 168, 606
FokI	GGATG	2 cut(s)	751, 757
FriOI	GRGCYC	2 cut(s)	763, 945
Fsp4HI	GCNGC	3 cut(s)	104, 168, 606
FspBI	CTAG	1 cut(s)	908
GluI	GCNGC	3 cut(s)	104, 168, 606
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	3 cut(s)	346, 761, 918
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	2 cut(s)	110, 522
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	323, 746
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	2 cut(s)	116, 426
Hpy166II	GTNNAC	2 cut(s)	275, 532
Hpy188III	TCNNGA	5 cut(s)	332, 620, 795, 923, 989
Hpy8I	GTNNAC	2 cut(s)	275, 532
Hpy99I	CGWCG	5 cut(s)	90, 120, 148, 185, 1022
HpyAV	CCTTC	2 cut(s)	668, 929
HpyCH4III	ACNGT	3 cut(s)	116, 1208, 1355
HpyCH4IV	ACGT	2 cut(s)	1144, 1291
HpyCH4V	TGCA	9 cut(s)	112, 317, 356, 509, 949, 1121, 1169, 1268, 1316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 118
HpyF3I	CTNAG	5 cut(s)	364, 749, 936, 1211, 1358
HpySE526I	ACGT	2 cut(s)	1144, 1291
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
LmnI	GCTCC	3 cut(s)	20, 140, 940
Lsp1109I	GCAGC	2 cut(s)	115, 617
MaeI	CTAG	1 cut(s)	908
MaeII	ACGT	2 cut(s)	1144, 1291
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	8 cut(s)	82, 281, 288, 362, 426, 799, 828, 1035
MboI	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
MboII	GAAGA	5 cut(s)	30, 35, 554, 635, 863
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	4 cut(s)	80, 279, 360, 424
MhlI	GDGCHC	2 cut(s)	763, 945
MlyI	GAGTC	3 cut(s)	59, 139, 610
MmeI	TCCRAC	1 cut(s)	163
MseI	TTAA	9 cut(s)	578, 744, 788, 1029, 1077, 1109, 1224, 1256, 1371
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	1116, 1263
MssI	GTTTAAAC	1 cut(s)	789
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	1187, 1334
MvaI	CCWGG	2 cut(s)	1116, 1263
MwoI	GCNNNNNNNGC	2 cut(s)	109, 118
NdeII	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	3 cut(s)	82, 483, 761
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	122
PctI	GAATGC	2 cut(s)	1187, 1334
PfeI	GAWTC	7 cut(s)	186, 383, 389, 595, 626, 649, 992
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	105, 169, 607
PleI	GAGTC	3 cut(s)	58, 138, 610
PmeI	GTTTAAAC	1 cut(s)	789
PpsI	GAGTC	3 cut(s)	58, 138, 610
PpuMI	RGGWCCY	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	1114, 1261
PspGI	CCWGG	2 cut(s)	1114, 1261
PspN4I	GGNNCC	3 cut(s)	82, 483, 761
PspOMI	GGGCCC	1 cut(s)	759
PspPI	GGNCC	4 cut(s)	344, 481, 759, 760
PspPPI	RGGWCCY	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	4 cut(s)	80, 279, 360, 424
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	2 cut(s)	274, 1061
RsaNI	GTAC	2 cut(s)	273, 1060
SacI	GAGCTC	1 cut(s)	945
SaqAI	TTAA	9 cut(s)	578, 744, 788, 1029, 1077, 1109, 1224, 1256, 1371
SatI	GCNGC	3 cut(s)	104, 168, 606
Sau3AI	GATC	8 cut(s)	80, 279, 286, 360, 424, 797, 826, 1033
Sau96I	GGNCC	4 cut(s)	344, 481, 759, 760
SchI	GAGTC	3 cut(s)	59, 139, 610
ScrFI	CCNGG	2 cut(s)	1116, 1263
SduI	GDGCHC	2 cut(s)	763, 945
SinI	GGWCC	1 cut(s)	481
SsiI	CCGC	4 cut(s)	72, 168, 1157, 1304
SspMI	CTAG	1 cut(s)	908
SstI	GAGCTC	1 cut(s)	945
StyD4I	CCNGG	2 cut(s)	1114, 1261
TaaI	ACNGT	3 cut(s)	116, 1208, 1355
TaiI	ACGT	2 cut(s)	1147, 1294
TaqI	TCGA	2 cut(s)	208, 1020
TaqII	GACCGA	1 cut(s)	78
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	7 cut(s)	186, 383, 389, 595, 626, 649, 992
Tru1I	TTAA	9 cut(s)	578, 744, 788, 1029, 1077, 1109, 1224, 1256, 1371
Tru9I	TTAA	9 cut(s)	578, 744, 788, 1029, 1077, 1109, 1224, 1256, 1371
TscAI	CASTG	2 cut(s)	34, 372
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	103, 605
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	8 cut(s)	233, 546, 555, 641, 687, 759, 995, 1070
TspRI	CASTG	2 cut(s)	34, 372
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	4 cut(s)	310, 566, 1013, 1022
XspI	CTAG	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.