Rroxscaffold_3G00233900

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
20243975 .. 20255902
11928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233900.1

Sequence Viewer

Length: 1815 bp
ATGGGGCAGGGAAGCTCCAAAGAAGACACTGGTGTTTCTTCAGCTTCAGAGTCGTCCTCCAAAGCAGGAGGAGGAGGAGGAGGAGGATCCAGTCGGTCTCGCCTGAAGCAGCGACTGCACCGTCGGCGTCAAGAGAGTCGCTCCAATTCGTCGTCACATCACAAATGCCTCGCCGCCGAGGATTTCGTCGGAATCGCTCTCCTCACCCTCGTTCGAGCTGAAATGAAGTTCAAGGACAAGTGGCTGGCTTGTCTTTCCTTTGGAGAGCAAACCTTTCGTACACAGATCTCTGATCAAACAGACAAACCTGTTTGGAATTCTGCAAAGAAGCTTTGTCTGGACAAAAATGGGCCTCGTTTTGCAAGGATCTCAGTGTTTGAGACGAATAAAATGTCGAAGAACACTCTGATAGGATTTTGTGAGATTGATCTACTTGAATTTCTAACCAGGGAATTAGAATCCGATTCCAGTTCCGAGTGTGAGACATTGAACCTGTTAGATCCATCATCACCAGACAAAGTCGTGGGAGAAATATCTGTTTCAATATCTGTTGAGGACCCAATTGAAACAGAAAAGAGTTTTGCAAGACGCATTTTATCCATAGTGGACTACAATGAAGATGGACACCTTTCATTGTCTGAATTTTCTGACTTAATTACTGCTTTTGGGAATCAAGTGGCAGCGAACAAGAAAGAGGAGATGTTTAAAGCAGCTGACAAGAACGGGGATGGTGCTGTTAGCATGGATGAGTTGGCTGACCTTCTTGCCATTCAACAAGAAAAGGAACCACTAATCAATTGCTGTCCTGTTTGTGGCGAGACTCTTGAAGATTCTGATACGCTGAACCACATGATTCATTTGACCCTATGTTTTGATGAAGGAACTGGAAAACAGGTTATGACTGGAGGATTTTTGACAGATAAACAGGCTAATTATGGGTGGATGTTTAAGCTTAGTGAATGGGCCCATTTTTCATCCTATGACATTGGTTTAAACTCTGGATCAAGTAGTTCCCATATTCTGGTATTTGATCGGAGGACAAAGAGACTTGTGGAAGAAGTGATAGATGGAAAGATTGTCTTGTCAATGAGAGCCATTTACCAGTCAAAGCTAGGGCTTGGCCTTCTGGATACAGGGGCTAAGGAGCTCTTGCAGAACATCTCTGAAAAGCAAGGGAGGAAAATGAACTCTCTGGAATCTGCTAAAGATATACCAAAATTCGTCGAATTTTTTAAGGATCAACTCAATTTGGCTGAAATGAAGTACCCTTTGGAACATTTTAAGACATTCAATCAATTTTTTGTGAGAGAATTAAAGCCTGGTGCAAGACCAGTTGCCTGCCCAGAACGTGATGATGTTGCCGTCTGTGGTGCAGATAGCCGTCTTACAGCATTCAGTTCTGTTGATGACAGTCTAAGATTTTGGATTAAGGGTCGGAAGTTTTCAGTTCAAGGACTTCTGGGGAAAGATATTTGTTCCAGTGCTTTTATTGATGGAACATTGGTTATCTTTCGTTTGGCACCACAGGATTATCATCGTTTTCATAGTCCTGTTTCTGGAACTGTTGAGCAGTTTGTAAATATACCTGGATGCCTATATACGGTTAACCCTATTGCTGTTAATAGCAAGTATTGTAATGTCTTCACTGAGAACAAGCGAGTAGTATCAATTATATCAACGACAGAGTTTGGAAAGGTGGCTTTTGTTGCAATCGGTGCAACTATGGTTGGCAGCATCACCTTTTTAAAGAAGGAGGAGACCATGTTGAGAAAGGAGATGAGTTTGGATATTTCTCGTTTGGTGGAAGCACTGTGA

Protein Analysis

604

Amino Acids

66.97

Weight (kDa)

5.9

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 195 - 254 2.7e-07 EF-hand domain pair
PS_Dcarbxylase PF02666 430 - 591 5.7e-45 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 1519
AccB7I CCANNNNNTGG 1 cut(s) 1021
AciI CCGC 1 cut(s) 174
AclWI GGATC 6 cut(s) 81, 94, 374, 494, 1009, 1245
AcsI RAATTY 5 cut(s) 316, 437, 641, 1217, 1226
AcuI CTGAAG 3 cut(s) 24, 30, 125
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 280, 1265
AfiI CCNNNNNNNGG 4 cut(s) 812, 1021, 1556, 1600
AgsI TTSAA 9 cut(s) 232, 437, 490, 543, 566, 773, 827, 1291, 1451
AjnI CCWGG 3 cut(s) 446, 1318, 1585
AjuI GAANNNNNNNTTGG 2 cut(s) 1253, 1285
AluBI AGCT 8 cut(s) 15, 44, 218, 331, 713, 952, 1111, 1147
AluI AGCT 8 cut(s) 15, 44, 218, 331, 713, 952, 1111, 1147
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 6 cut(s) 102, 374, 476, 812, 1039, 1751
AlwI GGATC 6 cut(s) 81, 94, 374, 494, 1009, 1245
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 3 cut(s) 350, 963, 1120
ApaI GGGCCC 1 cut(s) 967
ApeKI GCWGC 4 cut(s) 109, 680, 710, 1731
ApoI RAATTY 5 cut(s) 316, 437, 641, 1217, 1226
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AspS9I GGNCC 4 cut(s) 350, 556, 963, 964
AsuHPI GGTGA 3 cut(s) 196, 501, 1729
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 967
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 1519
BanII GRGCYC 2 cut(s) 967, 1149
BbsI GAAGAC 2 cut(s) 30, 1633
Bbv12I GWGCWC 1 cut(s) 1149
BbvI GCAGC 4 cut(s) 121, 692, 722, 1743
BccI CCATC 5 cut(s) 511, 614, 722, 1061, 1487
BceAI ACGGC 2 cut(s) 1346, 1365
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 3 cut(s) 448, 1320, 1587
BciVI GTATCC 1 cut(s) 1123
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 6 cut(s) 102, 374, 476, 812, 1039, 1751
BfaI CTAG 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 1123
BglII AGATCT 1 cut(s) 285
BisI GCNGC 5 cut(s) 110, 174, 681, 711, 1732
BlsI GCNGC 5 cut(s) 111, 175, 682, 712, 1733
Bme1390I CCNGG 3 cut(s) 448, 1320, 1587
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 4 cut(s) 350, 556, 963, 964
BmiI GGNNCC 5 cut(s) 88, 558, 786, 965, 1521
BmrFI CCNGG 3 cut(s) 448, 1320, 1587
BmsI GCATC 2 cut(s) 1580, 1743
BpiI GAAGAC 2 cut(s) 30, 1633
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 125, 157
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 1140
BsaBI GATNNNNATC 1 cut(s) 1533
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 102, 1751
BsaJI CCNNGG 2 cut(s) 177, 447
BsaXI ACNNNNNCTCC 2 cut(s) 1748, 1778
Bsc4I CCNNNNNNNGG 4 cut(s) 812, 1021, 1556, 1600
Bse1I ACTGG 8 cut(s) 34, 90, 468, 889, 907, 1102, 1331, 1479
Bse8I GATNNNNATC 1 cut(s) 1533
BseBI CCWGG 3 cut(s) 448, 1320, 1587
BseDI CCNNGG 2 cut(s) 177, 447
BseGI GGATG 5 cut(s) 733, 751, 948, 974, 1595
BseJI GATNNNNATC 1 cut(s) 1533
BseLI CCNNNNNNNGG 4 cut(s) 812, 1021, 1556, 1600
BseMII CTCAG 2 cut(s) 384, 1638
BseNI ACTGG 8 cut(s) 34, 90, 468, 889, 907, 1102, 1331, 1479
BseRI GAGGAG 8 cut(s) 84, 87, 90, 93, 96, 191, 710, 1769
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 4 cut(s) 121, 692, 722, 1743
BsgI GTGCAG 2 cut(s) 101, 1392
BshFI GGCC 3 cut(s) 352, 965, 1122
BshNI GGYRCC 1 cut(s) 1519
BsiHKAI GWGCWC 1 cut(s) 1149
BslI CCNNNNNNNGG 4 cut(s) 812, 1021, 1556, 1600
BsmAI GTCTC 6 cut(s) 102, 374, 476, 812, 1039, 1751
BsmBI CGTCTC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 1391
BsnI GGCC 3 cut(s) 352, 965, 1122
Bso31I GGTCTC 2 cut(s) 102, 1751
Bsp120I GGGCCC 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 967, 1149
Bsp143I GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
BspACI CCGC 1 cut(s) 174
BspANI GGCC 3 cut(s) 352, 965, 1122
BspCNI CTCAG 2 cut(s) 383, 1639
BspLI GGNNCC 5 cut(s) 88, 558, 786, 965, 1521
BspPI GGATC 6 cut(s) 81, 94, 374, 494, 1009, 1245
BspT107I GGYRCC 1 cut(s) 1519
BspTNI GGTCTC 2 cut(s) 102, 1751
BsrI ACTGG 8 cut(s) 34, 90, 468, 889, 907, 1102, 1331, 1479
BssECI CCNNGG 2 cut(s) 177, 447
BssMI GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
BssNI GRCGYC 1 cut(s) 127
Bst2UI CCWGG 3 cut(s) 448, 1320, 1587
Bst4CI ACNGT 5 cut(s) 122, 1412, 1564, 1603, 1812
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 2 cut(s) 115, 1715
BstC8I GCNNGC 2 cut(s) 246, 1339
BstDEI CTNAG 5 cut(s) 370, 953, 1140, 1415, 1647
BstF5I GGATG 5 cut(s) 733, 751, 948, 974, 1595
BstKTI GATC 9 cut(s) 89, 288, 295, 369, 430, 502, 1004, 1033, 1240
BstMAI GTCTC 6 cut(s) 102, 374, 476, 812, 1039, 1751
BstMBI GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 115, 124, 1706, 1715
BstNI CCWGG 3 cut(s) 448, 1320, 1587
BstSCI CCNGG 3 cut(s) 446, 1318, 1585
BstSLI GKGCMC 1 cut(s) 967
BstV1I GCAGC 4 cut(s) 121, 692, 722, 1743
BstV2I GAAGAC 2 cut(s) 30, 1633
BstX2I RGATCY 4 cut(s) 86, 285, 366, 499
BstYI RGATCY 4 cut(s) 86, 285, 366, 499
BsuI GTATCC 1 cut(s) 1123
BsuRI GGCC 3 cut(s) 352, 965, 1122
BtsCI GGATG 5 cut(s) 733, 751, 948, 974, 1595
BtsIMutI CAGTG 5 cut(s) 27, 378, 1486, 1644, 1808
Cac8I GCNNGC 2 cut(s) 246, 1339
CaiI CAGNNNCTG 1 cut(s) 115
Cfr13I GGNCC 4 cut(s) 350, 556, 963, 964
CseI GACGC 2 cut(s) 116, 597
Csp6I GTAC 2 cut(s) 279, 1264
CviAII CATG 3 cut(s) 742, 850, 1762
CviQI GTAC 2 cut(s) 279, 1264
DdeI CTNAG 5 cut(s) 370, 953, 1140, 1415, 1647
DpnI GATC 9 cut(s) 88, 287, 294, 368, 429, 501, 1003, 1032, 1239
DpnII GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
DraI TTTAAA 3 cut(s) 706, 993, 1746
DrdI GACNNNNNNGTC 1 cut(s) 120
DseDI GACNNNNNNGTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 1147
Eco24I GRGCYC 2 cut(s) 967, 1149
Eco31I GGTCTC 2 cut(s) 102, 1751
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 3 cut(s) 24, 30, 125
EcoICRI GAGCTC 1 cut(s) 1147
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 446, 1318, 1585
EcoT38I GRGCYC 2 cut(s) 967, 1149
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 3 cut(s) 745, 853, 1765
FalI AAGNNNNNCTT 4 cut(s) 1064, 1096, 1133, 1165
FatI CATG 3 cut(s) 741, 849, 1761
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 5 cut(s) 110, 174, 681, 711, 1732
FokI GGATG 5 cut(s) 740, 758, 955, 961, 1602
FriOI GRGCYC 2 cut(s) 967, 1149
Fsp4HI GCNGC 5 cut(s) 110, 174, 681, 711, 1732
FspBI CTAG 1 cut(s) 1112
GluI GCNGC 5 cut(s) 110, 174, 681, 711, 1732
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 352, 965, 1122
HgaI GACGC 2 cut(s) 116, 597
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 745, 853, 1765
HincII GTYRAC 1 cut(s) 1606
HindII GTYRAC 1 cut(s) 1606
HindIII AAGCTT 2 cut(s) 329, 950
HpaI GTTAAC 1 cut(s) 1606
HphI GGTGA 3 cut(s) 196, 501, 1729
Hpy166II GTNNAC 3 cut(s) 281, 607, 1606
Hpy188III TCNNGA 7 cut(s) 131, 338, 824, 999, 1127, 1193, 1557
Hpy8I GTNNAC 3 cut(s) 281, 607, 1606
Hpy99I CGWCG 4 cut(s) 126, 154, 191, 1226
HpyAV CCTTC 4 cut(s) 770, 872, 1133, 1744
HpyCH4III ACNGT 5 cut(s) 122, 1412, 1564, 1603, 1812
HpyCH4IV ACGT 1 cut(s) 1348
HpyCH4V TGCA 9 cut(s) 118, 323, 362, 584, 1153, 1325, 1373, 1709, 1718
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 124, 1706, 1715
HpyF3I CTNAG 5 cut(s) 370, 953, 1140, 1415, 1647
HpySE526I ACGT 1 cut(s) 1348
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 745, 853, 1765
Ksp22I TGATCA 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 1606
Kzo9I GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
LmnI GCTCC 3 cut(s) 20, 146, 1144
Lsp1109I GCAGC 4 cut(s) 121, 692, 722, 1743
LweI GCATC 2 cut(s) 1580, 1743
MaeI CTAG 1 cut(s) 1112
MaeII ACGT 1 cut(s) 1348
MaeIII GTNAC 1 cut(s) 153
MalI GATC 9 cut(s) 88, 287, 294, 368, 429, 501, 1003, 1032, 1239
MboI GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
MboII GAAGA 7 cut(s) 30, 35, 409, 629, 839, 1067, 1633
MfeI CAATTG 2 cut(s) 561, 796
MflI RGATCY 4 cut(s) 86, 285, 366, 499
MhlI GDGCHC 2 cut(s) 967, 1149
MlyI GAGTC 3 cut(s) 59, 145, 814
MmeI TCCRAC 2 cut(s) 169, 1415
MspA1I CMGCKG 1 cut(s) 713
MspR9I CCNGG 3 cut(s) 448, 1320, 1587
MssI GTTTAAAC 1 cut(s) 993
MunI CAATTG 2 cut(s) 561, 796
Mva1269I GAATGC 1 cut(s) 1391
MvaI CCWGG 3 cut(s) 448, 1320, 1587
MwoI GCNNNNNNNGC 4 cut(s) 115, 124, 1706, 1715
NdeII GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
NlaIII CATG 3 cut(s) 745, 853, 1765
NlaIV GGNNCC 5 cut(s) 88, 558, 786, 965, 1521
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 153
PctI GAATGC 1 cut(s) 1391
PfeI GAWTC 7 cut(s) 192, 458, 464, 670, 830, 853, 1196
PflFI GACNNNGTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 1021
PkrI GCNGC 5 cut(s) 111, 175, 682, 712, 1733
PleI GAGTC 3 cut(s) 58, 144, 814
PmeI GTTTAAAC 1 cut(s) 993
PpsI GAGTC 3 cut(s) 58, 144, 814
PpuMI RGGWCCY 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 446, 1318, 1585
PspGI CCWGG 3 cut(s) 446, 1318, 1585
PspN4I GGNNCC 5 cut(s) 88, 558, 786, 965, 1521
PspOMI GGGCCC 1 cut(s) 963
PspPI GGNCC 4 cut(s) 350, 556, 963, 964
PspPPI RGGWCCY 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 115
PsuI RGATCY 4 cut(s) 86, 285, 366, 499
PsyI GACNNNGTC 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 2 cut(s) 280, 1265
RsaNI GTAC 2 cut(s) 279, 1264
SacI GAGCTC 1 cut(s) 1149
SatI GCNGC 5 cut(s) 110, 174, 681, 711, 1732
Sau3AI GATC 9 cut(s) 86, 285, 292, 366, 427, 499, 1001, 1030, 1237
Sau96I GGNCC 4 cut(s) 350, 556, 963, 964
SchI GAGTC 3 cut(s) 59, 145, 814
ScrFI CCNGG 3 cut(s) 448, 1320, 1587
SduI GDGCHC 2 cut(s) 967, 1149
SfaNI GCATC 2 cut(s) 1580, 1743
SinI GGWCC 1 cut(s) 556
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 1112
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 3 cut(s) 446, 1318, 1585
TaaI ACNGT 5 cut(s) 122, 1412, 1564, 1603, 1812
TaiI ACGT 1 cut(s) 1351
TaqI TCGA 3 cut(s) 214, 395, 1224
TaqII GACCGA 1 cut(s) 84
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 7 cut(s) 192, 458, 464, 670, 830, 853, 1196
TscAI CASTG 5 cut(s) 34, 378, 1486, 1651, 1815
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 4 cut(s) 109, 680, 710, 1731
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 9 cut(s) 239, 621, 630, 845, 891, 963, 1199, 1274, 1532
TspRI CASTG 5 cut(s) 34, 378, 1486, 1651, 1815
Tth111I GACNNNGTC 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 1021
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 5 cut(s) 316, 437, 641, 1217, 1226
XspI CTAG 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.