RLG00000001828

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
21394657 .. 21406035
11379 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001828

Sequence Viewer

Length: 1797 bp
ATGCCTCGCCGCCGAGGATTTCGTCGGAATCGCTCTCCTCACCCTCGTTCGAAACAGACAAACCTGTTTGGAATTCTGCGAAAAGGACCGCTTGATGATCTGGGTGTTATGAAATTTGAGATAAAGGAGCTTTTCGGGGCAAAGAAGCTTTGTCTGGACAAAAATGGGCCTCGTGTTGCAAGGATCTCAGTGTTTGAGACGAATAAAATGTATAAGAACACTCTGATAGGATTTTGTGAGATTGATCTACTTGAATTTCTAACCAGGGAATTAGAATCCGATTCCATTTCCAAGTGTGAGACATTGAACCTGTTAGATCCATCATCACCAGACAAAGTCGTGGGAGAAATATCTGTTTCAATATCTGTTGAGGACCCAATTGAAACAGAAAAGAGTTTTGCAAGACGGATTTTATCCATAGTGGACTACAATGAAGATGGACACCTTTCATTGTCTGAATTTTCTGACTTAATTACTGCTTTTGGGAATCAAGTGGCAGCGAACAAGAAAGAGGAGCTGTTTAAAGCAGCTGACAAGAACGGGGATGGTGTTGTTAGCATGGATGAGTTGGCTGACCTTCTTGCCATTCAACAAGAAAAGGAACCACTAATCAATTGCTGTCCTGTTTGTGGCGAGACTCTTGAAGATTCTGATACGCTGAACCACATGATTCATTTGACCCTATGTTTTGATGAAGGAACTGGAAAACAGGTTATGACTGGAGGATTTTTGACAGATAAACAGGCTAATTATGGGTGGATGTTTAAGCTTAGTGAATGGGCCCATTTTTCATCCTATGACATTGGTTTAAACTCTGGATCAAGTAGTTCCCATATTCTGGTATTTGATCGGAGGACAAAGAGACTTGTGGAAGAATTGATAGATGGAAAGATTGTCTTGTCAATGAGAGCCATTTACCAGTCAAAGCTAGGGCTTGGCCTTCTGGATACAGGGGCTAAGGAGCTCTTGCAGAACATCTCTGAAAAGCAAGGGAGGAAAATGAACTCTCTGGAATCTGCTAAAGATATACCAAAATTCGTTGAATTTTTTAAGGATCAACTCAATTTGGCTGAAATGAAGTACCCTTTGGAACATTTTAAGACATTCAATCAATTTTTTGTGAGAGAGTTAAAGCCTGGTGCAAGACCAGTTGCCTGCCCTGAACGTGATGATGTTGCCGTCTCTGGTGCCGATAGCCGTCTTACAGCATTCAGTTCTGTTGATGACAGTCTAAGATTTTGGATTAAGGGTCGGAAGTTTTCAGTTCAAGGACTTCTGGGGAAAGATATTTGTTCCAGTGCTTTTATTGATGGAACATTGGTTATCTTTCGTTTGGCACCACAGGATTATCATCGTTTTCATAGTCCTGTTTCTGGAACTGTTGAGCAGTTTGTAAATATACCTGGATGCCTATATACGGTTAACCCTATTGCTGTTAATAGCAAGTATTGTAATGTCTTCACTGAGAATAAGCGAGTAGTATCAATTATATCAACGACAGAGTTTGGAAAGGTGGCTTTTGTTGCAATCGGTGCAACTATGGTTGGCAGCATCACCTTTTTAAAGAAGGAGGGAGACCATGTTAAGAAAGGAGATGAGTTTGGATATTTCTCGTTTGGTGGAAGCACTGTGATTTGTGTTTTCGAAAAGGATGCGATTGAGATAGATGAGGATCTCTTAGCAAATAGTTCCCGATCACTAGAGACCTTGGTTTCTGTTGGGATGAAGTTGGGTGTGTCAAAAAAACAAGCCAACATTGGGTTGCCAGACTTACATAACTGTGTGTTGCAAGATTGA

Protein Analysis

599

Amino Acids

66.63

Weight (kDa)

5.9

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 134 - 193 3.7e-08 EF-hand domain pair
PS_Dcarbxylase PF02666 369 - 564 1.9e-60 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1187, 1336
AccB7I CCANNNNNTGG 1 cut(s) 838
AciI CCGC 2 cut(s) 10, 89
AclWI GGATC 5 cut(s) 191, 311, 826, 1062, 1680
AcsI RAATTY 6 cut(s) 72, 113, 254, 458, 1034, 1043
AfaI GTAC 1 cut(s) 1082
AfiI CCNNNNNNNGG 5 cut(s) 629, 838, 1373, 1417, 1758
AgsI TTSAA 9 cut(s) 254, 307, 360, 383, 590, 644, 1043, 1108, 1268
AjnI CCWGG 3 cut(s) 263, 1135, 1402
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
AluBI AGCT 7 cut(s) 130, 148, 517, 530, 769, 928, 964
AluI AGCT 7 cut(s) 130, 148, 517, 530, 769, 928, 964
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 7 cut(s) 191, 293, 629, 856, 1186, 1569, 1697
AlwI GGATC 5 cut(s) 191, 311, 826, 1062, 1680
AoxI GGCC 3 cut(s) 167, 780, 937
ApaI GGGCCC 1 cut(s) 784
ApeKI GCWGC 3 cut(s) 497, 527, 1548
ApoI RAATTY 6 cut(s) 72, 113, 254, 458, 1034, 1043
AspS9I GGNCC 5 cut(s) 86, 167, 373, 780, 781
AsuHPI GGTGA 3 cut(s) 32, 318, 1546
AsuII TTCGAA 2 cut(s) 50, 1644
AvaII GGWCC 2 cut(s) 86, 373
BaeGI GKGCMC 1 cut(s) 784
BanI GGYRCC 2 cut(s) 1187, 1336
BanII GRGCYC 2 cut(s) 784, 966
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 1450
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 3 cut(s) 509, 539, 1560
BccI CCATC 5 cut(s) 328, 431, 539, 878, 1304
BceAI ACGGC 2 cut(s) 1163, 1182
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BciT130I CCWGG 3 cut(s) 265, 1137, 1404
BciVI GTATCC 1 cut(s) 940
BcoDI GTCTC 7 cut(s) 191, 293, 629, 856, 1186, 1569, 1697
BfaI CTAG 2 cut(s) 929, 1700
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 4 cut(s) 10, 498, 528, 1549
BlsI GCNGC 4 cut(s) 11, 499, 529, 1550
Bme1390I CCNGG 3 cut(s) 265, 1137, 1404
Bme18I GGWCC 2 cut(s) 86, 373
BmgT120I GGNCC 5 cut(s) 86, 167, 373, 780, 781
BmiI GGNNCC 5 cut(s) 375, 603, 782, 1189, 1338
BmrFI CCNGG 3 cut(s) 265, 1137, 1404
BmsI GCATC 3 cut(s) 1397, 1560, 1642
BpiI GAAGAC 1 cut(s) 1450
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 957
Bpu14I TTCGAA 2 cut(s) 50, 1644
BsaBI GATNNNNATC 2 cut(s) 1350, 1671
BsaI GGTCTC 2 cut(s) 1569, 1697
BsaJI CCNNGG 3 cut(s) 13, 264, 1707
BsaXI ACNNNNNCTCC 2 cut(s) 1566, 1596
Bsc4I CCNNNNNNNGG 5 cut(s) 629, 838, 1373, 1417, 1758
Bse1I ACTGG 5 cut(s) 706, 724, 919, 1148, 1296
Bse8I GATNNNNATC 2 cut(s) 1350, 1671
BseBI CCWGG 3 cut(s) 265, 1137, 1404
BseDI CCNNGG 3 cut(s) 13, 264, 1707
BseGI GGATG 7 cut(s) 550, 568, 765, 791, 1412, 1657, 1728
BseJI GATNNNNATC 2 cut(s) 1350, 1671
BseLI CCNNNNNNNGG 5 cut(s) 629, 838, 1373, 1417, 1758
BseMII CTCAG 2 cut(s) 201, 1455
BseNI ACTGG 5 cut(s) 706, 724, 919, 1148, 1296
BseRI GAGGAG 2 cut(s) 27, 527
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 3 cut(s) 509, 539, 1560
BshFI GGCC 3 cut(s) 169, 782, 939
BshNI GGYRCC 2 cut(s) 1187, 1336
BsiHKAI GWGCWC 1 cut(s) 966
BslI CCNNNNNNNGG 5 cut(s) 629, 838, 1373, 1417, 1758
BsmAI GTCTC 7 cut(s) 191, 293, 629, 856, 1186, 1569, 1697
BsmBI CGTCTC 2 cut(s) 191, 1186
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 3 cut(s) 169, 782, 939
Bso31I GGTCTC 2 cut(s) 1569, 1697
Bsp119I TTCGAA 2 cut(s) 50, 1644
Bsp120I GGGCCC 1 cut(s) 780
Bsp1286I GDGCHC 2 cut(s) 784, 966
Bsp143I GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
BspACI CCGC 2 cut(s) 10, 89
BspANI GGCC 3 cut(s) 169, 782, 939
BspCNI CTCAG 2 cut(s) 200, 1456
BspLI GGNNCC 5 cut(s) 375, 603, 782, 1189, 1338
BspPI GGATC 5 cut(s) 191, 311, 826, 1062, 1680
BspT104I TTCGAA 2 cut(s) 50, 1644
BspT107I GGYRCC 2 cut(s) 1187, 1336
BspTNI GGTCTC 2 cut(s) 1569, 1697
BsrI ACTGG 5 cut(s) 706, 724, 919, 1148, 1296
BssECI CCNNGG 3 cut(s) 13, 264, 1707
BssMI GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 1707
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 265, 1137, 1404
Bst4CI ACNGT 5 cut(s) 1229, 1381, 1420, 1630, 1781
BstAPI GCANNNNNTGC 1 cut(s) 1532
BstBI TTCGAA 2 cut(s) 50, 1644
BstC8I GCNNGC 1 cut(s) 1156
BstDEI CTNAG 6 cut(s) 187, 770, 957, 1232, 1464, 1678
BstF5I GGATG 7 cut(s) 550, 568, 765, 791, 1412, 1657, 1728
BstKTI GATC 9 cut(s) 100, 186, 247, 319, 821, 850, 1057, 1675, 1697
BstMAI GTCTC 7 cut(s) 191, 293, 629, 856, 1186, 1569, 1697
BstMBI GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
BstMWI GCNNNNNNNGC 2 cut(s) 1523, 1532
BstNI CCWGG 3 cut(s) 265, 1137, 1404
BstSCI CCNGG 3 cut(s) 263, 1135, 1402
BstSLI GKGCMC 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 509, 539, 1560
BstV2I GAAGAC 1 cut(s) 1450
BstX2I RGATCY 3 cut(s) 183, 316, 1672
BstYI RGATCY 3 cut(s) 183, 316, 1672
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 169, 782, 939
BtsCI GGATG 7 cut(s) 550, 568, 765, 791, 1412, 1657, 1728
BtsIMutI CAGTG 4 cut(s) 195, 1303, 1461, 1626
Cac8I GCNNGC 1 cut(s) 1156
Cfr13I GGNCC 5 cut(s) 86, 167, 373, 780, 781
Csp6I GTAC 1 cut(s) 1081
CviAII CATG 3 cut(s) 559, 667, 1580
CviQI GTAC 1 cut(s) 1081
DdeI CTNAG 6 cut(s) 187, 770, 957, 1232, 1464, 1678
DpnI GATC 9 cut(s) 99, 185, 246, 318, 820, 849, 1056, 1674, 1696
DpnII GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
DraI TTTAAA 3 cut(s) 523, 810, 1563
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 1 cut(s) 1707
Eco24I GRGCYC 2 cut(s) 784, 966
Eco31I GGTCTC 2 cut(s) 1569, 1697
Eco47I GGWCC 2 cut(s) 86, 373
Eco53kI GAGCTC 1 cut(s) 964
EcoICRI GAGCTC 1 cut(s) 964
EcoO109I RGGNCCY 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 263, 1135, 1402
EcoT14I CCWWGG 1 cut(s) 1707
EcoT38I GRGCYC 2 cut(s) 784, 966
ErhI CCWWGG 1 cut(s) 1707
Esp3I CGTCTC 2 cut(s) 191, 1186
FaeI CATG 3 cut(s) 562, 670, 1583
FalI AAGNNNNNCTT 6 cut(s) 75, 107, 881, 913, 950, 982
FatI CATG 3 cut(s) 558, 666, 1579
Fnu4HI GCNGC 4 cut(s) 10, 498, 528, 1549
FokI GGATG 7 cut(s) 557, 575, 772, 778, 1419, 1664, 1735
FriOI GRGCYC 2 cut(s) 784, 966
Fsp4HI GCNGC 4 cut(s) 10, 498, 528, 1549
FspBI CTAG 2 cut(s) 929, 1700
GluI GCNGC 4 cut(s) 10, 498, 528, 1549
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 3 cut(s) 169, 782, 939
Hin1II CATG 3 cut(s) 562, 670, 1583
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HindIII AAGCTT 2 cut(s) 146, 767
HinfI GANTC 8 cut(s) 28, 275, 281, 487, 637, 647, 670, 1013
HpaI GTTAAC 1 cut(s) 1423
HphI GGTGA 3 cut(s) 32, 318, 1546
Hpy166II GTNNAC 2 cut(s) 424, 1423
Hpy188I TCNGA 9 cut(s) 27, 225, 280, 457, 466, 652, 852, 982, 1254
Hpy188III TCNNGA 7 cut(s) 155, 641, 816, 944, 1010, 1374, 1692
Hpy8I GTNNAC 2 cut(s) 424, 1423
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 587, 689, 950, 1561
HpyCH4III ACNGT 5 cut(s) 1229, 1381, 1420, 1630, 1781
HpyCH4IV ACGT 1 cut(s) 1165
HpyCH4V TGCA 7 cut(s) 179, 401, 970, 1142, 1526, 1535, 1789
HpyF10VI GCNNNNNNNGC 2 cut(s) 1523, 1532
HpyF3I CTNAG 6 cut(s) 187, 770, 957, 1232, 1464, 1678
HpySE526I ACGT 1 cut(s) 1165
Hsp92II CATG 3 cut(s) 562, 670, 1583
KspAI GTTAAC 1 cut(s) 1423
Kzo9I GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
LmnI GCTCC 3 cut(s) 127, 514, 961
Lsp1109I GCAGC 3 cut(s) 509, 539, 1560
LweI GCATC 3 cut(s) 1397, 1560, 1642
MaeI CTAG 2 cut(s) 929, 1700
MaeII ACGT 1 cut(s) 1165
MalI GATC 9 cut(s) 99, 185, 246, 318, 820, 849, 1056, 1674, 1696
MboI GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
MboII GAAGA 4 cut(s) 446, 656, 884, 1450
MfeI CAATTG 2 cut(s) 378, 613
MflI RGATCY 3 cut(s) 183, 316, 1672
MhlI GDGCHC 2 cut(s) 784, 966
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 2 cut(s) 5, 1232
MslI CAYNNNNRTG 1 cut(s) 1779
MspA1I CMGCKG 1 cut(s) 530
MspR9I CCNGG 3 cut(s) 265, 1137, 1404
MssI GTTTAAAC 1 cut(s) 810
MunI CAATTG 2 cut(s) 378, 613
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 3 cut(s) 265, 1137, 1404
MwoI GCNNNNNNNGC 2 cut(s) 1523, 1532
NdeII GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
NlaIII CATG 3 cut(s) 562, 670, 1583
NlaIV GGNNCC 5 cut(s) 375, 603, 782, 1189, 1338
NmeAIII GCCGAG 1 cut(s) 38
NspV TTCGAA 2 cut(s) 50, 1644
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 7 cut(s) 28, 275, 281, 487, 647, 670, 1013
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 838
PkrI GCNGC 4 cut(s) 11, 499, 529, 1550
PleI GAGTC 1 cut(s) 631
PmeI GTTTAAAC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 263, 1135, 1402
PspGI CCWGG 3 cut(s) 263, 1135, 1402
PspN4I GGNNCC 5 cut(s) 375, 603, 782, 1189, 1338
PspOMI GGGCCC 1 cut(s) 780
PspPI GGNCC 5 cut(s) 86, 167, 373, 780, 781
PspPPI RGGWCCY 1 cut(s) 373
PsuI RGATCY 3 cut(s) 183, 316, 1672
PsyI GACNNNGTC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 1 cut(s) 1082
RsaNI GTAC 1 cut(s) 1081
RseI CAYNNNNRTG 1 cut(s) 1779
SacI GAGCTC 1 cut(s) 966
SatI GCNGC 4 cut(s) 10, 498, 528, 1549
Sau3AI GATC 9 cut(s) 97, 183, 244, 316, 818, 847, 1054, 1672, 1694
Sau96I GGNCC 5 cut(s) 86, 167, 373, 780, 781
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 3 cut(s) 265, 1137, 1404
SduI GDGCHC 2 cut(s) 784, 966
SfaNI GCATC 3 cut(s) 1397, 1560, 1642
SfuI TTCGAA 2 cut(s) 50, 1644
SinI GGWCC 2 cut(s) 86, 373
SmiMI CAYNNNNRTG 1 cut(s) 1779
SsiI CCGC 2 cut(s) 10, 89
SspMI CTAG 2 cut(s) 929, 1700
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 3 cut(s) 263, 1135, 1402
StyI CCWWGG 1 cut(s) 1707
TaaI ACNGT 5 cut(s) 1229, 1381, 1420, 1630, 1781
TaiI ACGT 1 cut(s) 1168
TaqI TCGA 2 cut(s) 50, 1644
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 7 cut(s) 28, 275, 281, 487, 647, 670, 1013
TscAI CASTG 4 cut(s) 195, 1303, 1468, 1633
TseI GCWGC 3 cut(s) 497, 527, 1548
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 4 cut(s) 195, 1303, 1468, 1633
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 86, 373
XapI RAATTY 6 cut(s) 72, 113, 254, 458, 1034, 1043
XspI CTAG 2 cut(s) 929, 1700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.