Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019448

Physical Location & Seq

Genomic Coordinates Reverse (-)

14276986 .. 14279012

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCGAGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATCATATCAAACGGCTTCTAATCCTTGAAATTGAAGACGACGATCTTGTGGAAAAGAACAACTACTATTCGATAATTGAGCAGCAAGTGCTCACGGTGGCGAAGGTGGTGGAGGACAAGCTCGACGAGCAGATCGCAACCCTAGATCGAGTGGACGATTTGGAGGTTGTGGTCTTTTGGGGCCCGAATCCTTTTCGCCAGCGACTTGTAAGTTTGAGGAGGAGTGGTGACGTTGTCGGAGCTCATGAGCTTCCGGAGCTCTGCATAGACCTTGAAGGAGACATGTCGCCAGCTGCCGCTGTTGTCAAAGTCGAGAATCTTTCTCTTCTCCTTGTAGGGTGCAGATCTTGCTGGAGGAGATGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

137

Amino Acids

15.56

Weight (kDa)

5.04

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019448)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001334 RLG00000002601 RLG00000003708 RLG00000005142 RLG00000020279
rosa_multiflora	Rmu_ssc0000473.1_g000025
rosa_roxburghii	Rroxscaffold_4G00320620
rosa_samantha	Rh4DG215400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	71, 77, 317
AluBI	AGCT	5 cut(s)	163, 284, 292, 301, 335
AluI	AGCT	5 cut(s)	163, 284, 292, 301, 335
Alw21I	GWGCWC	3 cut(s)	135, 286, 303
Alw26I	GTCTC	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	1 cut(s)	223
ApaI	GGGCCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	124, 335
AspS9I	GGNCC	2 cut(s)	223, 224
AsuHPI	GGTGA	1 cut(s)	281
AxyI	CCTNAGG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	3 cut(s)	227, 286, 303
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	3 cut(s)	135, 286, 303
BbvI	GCAGC	2 cut(s)	136, 322
BceAI	ACGGC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	3 cut(s)	125, 336, 339
BlsI	GCNGC	3 cut(s)	126, 337, 340
BmgT120I	GGNCC	2 cut(s)	223, 224
BmiI	GGNNCC	2 cut(s)	224, 225
BpiI	GAAGAC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	3 cut(s)	253, 283, 388
Bse21I	CCTNAGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	34
BseRI	GAGGAG	2 cut(s)	274, 277
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	136, 322
BsgI	GTGCAG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	3 cut(s)	135, 286, 303
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	225
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	4 cut(s)	135, 227, 286, 303
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	85, 174, 187, 386
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	224, 225
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	85, 174, 187, 386
Bst4CI	ACNGT	3 cut(s)	18, 38, 139
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	2 cut(s)	130, 390
BstC8I	GCNNGC	2 cut(s)	242, 333
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	88, 177, 190, 389
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	85, 174, 187, 386
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 169, 298, 390
BstNSI	RCATGY	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	136, 322
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	242, 333
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	223, 224
CviAII	CATG	2 cut(s)	287, 325
CviJI	RGCY	7 cut(s)	58, 163, 225, 284, 292, 301, 335
CviKI_1	RGCY	7 cut(s)	58, 163, 225, 284, 292, 301, 335
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	4 cut(s)	87, 176, 189, 388
DpnII	GATC	4 cut(s)	85, 174, 187, 386
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	2 cut(s)	284, 301
Eco24I	GRGCYC	3 cut(s)	227, 286, 303
Eco53kI	GAGCTC	2 cut(s)	284, 301
Eco81I	CCTNAGG	1 cut(s)	23
EcoICRI	GAGCTC	2 cut(s)	284, 301
EcoO109I	RGGNCCY	1 cut(s)	223
EcoT38I	GRGCYC	3 cut(s)	227, 286, 303
FaeI	CATG	2 cut(s)	290, 328
FaiI	YATR	4 cut(s)	48, 288, 308, 326
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	286, 324
Fnu4HI	GCNGC	3 cut(s)	125, 336, 339
FriOI	GRGCYC	3 cut(s)	227, 286, 303
Fsp4HI	GCNGC	3 cut(s)	125, 336, 339
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	3 cut(s)	125, 336, 339
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	2 cut(s)	290, 328
HinfI	GANTC	2 cut(s)	229, 358
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	287, 296, 355
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	86, 170
HpyAV	CCTTC	2 cut(s)	139, 311
HpyCH4III	ACNGT	3 cut(s)	18, 38, 139
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	306, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 169, 298, 390
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	290, 328
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	85, 174, 187, 386
LmnI	GCTCC	2 cut(s)	281, 298
LpnPI	CCDG	4 cut(s)	254, 309, 345, 379
Lsp1109I	GCAGC	2 cut(s)	136, 322
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	38, 269
MalI	GATC	4 cut(s)	87, 176, 189, 388
MboI	GATC	4 cut(s)	85, 174, 187, 386
MboII	GAAGA	2 cut(s)	89, 359
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	4 cut(s)	135, 227, 286, 303
MluCI	AATT	2 cut(s)	72, 117
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	20, 148, 199, 252, 255, 390
MroI	TCCGGA	1 cut(s)	295
MspA1I	CMGCKG	2 cut(s)	335, 341
MspI	CCGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	130, 169, 298, 390
NdeII	GATC	4 cut(s)	85, 174, 187, 386
NlaIII	CATG	2 cut(s)	290, 328
NlaIV	GGNNCC	2 cut(s)	224, 225
NmuCI	GTSAC	2 cut(s)	38, 269
NspI	RCATGY	1 cut(s)	328
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	229, 358
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	126, 337, 340
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	2 cut(s)	286, 303
PspN4I	GGNNCC	2 cut(s)	224, 225
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	223, 224
PsuI	RGATCY	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	335
SacI	GAGCTC	2 cut(s)	286, 303
SatI	GCNGC	3 cut(s)	125, 336, 339
Sau3AI	GATC	4 cut(s)	85, 174, 187, 386
Sau96I	GGNCC	2 cut(s)	223, 224
SduI	GDGCHC	4 cut(s)	135, 227, 286, 303
Sse9I	AATT	2 cut(s)	72, 117
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	2 cut(s)	286, 303
TaaI	ACNGT	3 cut(s)	18, 38, 139
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	113, 165, 190, 354
TasI	AATT	2 cut(s)	72, 117
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	229, 358
TseFI	GTSAC	2 cut(s)	38, 269
TseI	GCWGC	2 cut(s)	124, 335
Tsp45I	GTSAC	2 cut(s)	38, 269
Tth111I	GACNNNGTC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.