Rh4DG215400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019448
Physical Location & Seq
Reverse (-)
41468256 .. 41468510
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG215400.1

Sequence Viewer

Length: 255 bp
ATGGATTTTCGGGTGAAGATTCAGAGGACCCATTTGTATGATTCCAATTCCAAATTTGAATTACGGAGGTTGTGGTGTTTTGGGCTCCCGAATCCTTTTCGCCAGCGGCTTATAAGTTTGAGGAGAAGTCGTGAGGTTGTCGGAGCTCATGATCTTCCGAAGCTCGGCCTAGACCTTGAAGAAGACTTGTCGCCAGCTGCCTCTGTTGTCGAAGCCGAGAATCTTGTCTCCTCTTCGTTCATCTCCAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.7

Weight (kDa)

9.1

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019448)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001334 RLG00000002601 RLG00000003708 RLG00000005142 RLG00000020279
rosa_multiflora Rmu_ssc0000473.1_g000025
rosa_roxburghii Rroxscaffold_4G00320620
rosa_samantha Rh4DG215400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 59, 179
AluBI AGCT 3 cut(s) 146, 163, 197
AluI AGCT 3 cut(s) 146, 163, 197
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 252
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 27
BanII GRGCYC 2 cut(s) 87, 148
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 170
BisI GCNGC 2 cut(s) 107, 198
BlsI GCNGC 2 cut(s) 108, 199
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 29, 86
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 136, 220
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 87, 148
Bsp143I GATC 2 cut(s) 151, 248
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 168
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 29, 86
BspPI GGATC 1 cut(s) 243
BssMI GATC 2 cut(s) 151, 248
Bst6I CTCTTC 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 104, 195
BstKTI GATC 2 cut(s) 154, 251
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 151, 248
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 104, 195
CaiI CAGNNNCTG 1 cut(s) 252
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 1 cut(s) 149
CviJI RGCY 7 cut(s) 85, 109, 146, 163, 168, 197, 215
CviKI_1 RGCY 7 cut(s) 85, 109, 146, 163, 168, 197, 215
DpnI GATC 2 cut(s) 153, 250
DpnII GATC 2 cut(s) 151, 248
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 146
Eco24I GRGCYC 2 cut(s) 87, 148
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 87, 148
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 39, 113, 150
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 107, 198
FriOI GRGCYC 2 cut(s) 87, 148
Fsp4HI GCNGC 2 cut(s) 107, 198
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 107, 198
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 1 cut(s) 152
HinfI GANTC 4 cut(s) 19, 41, 91, 220
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 24, 143, 159
Hpy188III TCNNGA 5 cut(s) 88, 131, 149, 246, 252
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 2 cut(s) 151, 248
LmnI GCTCC 2 cut(s) 90, 143
LpnPI CCDG 2 cut(s) 116, 207
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 1 cut(s) 170
MalI GATC 2 cut(s) 153, 250
MboI GATC 2 cut(s) 151, 248
MboII GAAGA 5 cut(s) 28, 146, 191, 194, 225
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 87, 148
MluCI AATT 3 cut(s) 46, 53, 59
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 6 cut(s) 18, 60, 114, 127, 211, 241
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 106, 197
NdeII GATC 2 cut(s) 151, 248
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 29, 86
NmeAIII GCCGAG 2 cut(s) 144, 241
PagI TCATGA 1 cut(s) 148
PfeI GAWTC 4 cut(s) 19, 41, 91, 220
PkrI GCNGC 2 cut(s) 108, 199
PpuMI RGGWCCY 1 cut(s) 27
PsiI TTATAA 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 29, 86
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 148
SatI GCNGC 2 cut(s) 107, 198
Sau3AI GATC 2 cut(s) 151, 248
Sau96I GGNCC 1 cut(s) 27
SduI GDGCHC 2 cut(s) 87, 148
SetI ASST 6 cut(s) 71, 138, 148, 165, 177, 199
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 3 cut(s) 46, 53, 59
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 148
TaqI TCGA 1 cut(s) 210
TasI AATT 3 cut(s) 46, 53, 59
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 4 cut(s) 19, 41, 91, 220
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 53
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.