Rroxscaffold_4G00320620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019448
Physical Location & Seq
Reverse (-)
49428499 .. 49433528
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320620.1

Sequence Viewer

Length: 384 bp
ATGAGGAAGGAAACCTTGGCCGGGAGGGGTAATGGACAAAGAAGAAGAAATGGCTTTTCGGGTGAAGATTCGGAGAACAGCATAAGCATGACCAAAAAATTGATTGAGAAGACTAGTGAAGAAGAAGAAGTTAGTAAGTCCAAGTCCAAGTCCAAGTCCCTTTACATCCGTAGCTTTGAGCGTAACCGCCGATTGATAAGAGTAAGAACCGGGGTGCTTATGCTTGTCCGCGCAGCCGATCCGAGCCATTTGTATGATTCCAATTCCAAATTGGAATTACGACAAGTGGGTTACGGTGGCTGGCGAAGACCTCCCCGCTGCAGGAGGCTGTGGTGTTTTGGGCTCCCGAATCCTTTTCGCCGGCGGCTTGAAACACAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

11.03

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019448)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001334 RLG00000002601 RLG00000003708 RLG00000005142 RLG00000020279
rosa_multiflora Rmu_ssc0000473.1_g000025
rosa_roxburghii Rroxscaffold_4G00320620
rosa_samantha Rh4DG215400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 4 cut(s) 187, 229, 316, 364
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 21, 321
AgsI TTSAA 1 cut(s) 371
AhlI ACTAGT 1 cut(s) 113
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 174, 379
AluI AGCT 2 cut(s) 174, 379
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 233, 318
AspLEI GCGC 1 cut(s) 233
AsuC2I CCSGG 2 cut(s) 22, 211
AsuHPI GGTGA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 116, 313
BbvI GCAGC 2 cut(s) 245, 305
BcnI CCSGG 2 cut(s) 22, 211
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 3 cut(s) 234, 319, 365
BlsI GCNGC 3 cut(s) 235, 320, 366
Bme1390I CCNGG 2 cut(s) 22, 211
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 22, 211
BpiI GAAGAC 2 cut(s) 116, 313
BpuMI CCSGG 2 cut(s) 22, 211
BsaJI CCNNGG 2 cut(s) 15, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 321
Bse118I RCCGGY 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 15, 210
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 21, 321
BseXI GCAGC 2 cut(s) 245, 305
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 3 cut(s) 21, 210, 361
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 21, 321
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 4 cut(s) 187, 229, 316, 364
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 344
BspMAI CTGCAG 1 cut(s) 323
BspPI GGATC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 15, 210
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 302, 362
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 20, 209
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 245, 305
BstV2I GAAGAC 2 cut(s) 116, 313
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 302, 362
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 360
CviAII CATG 1 cut(s) 88
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 83, 89, 221, 255
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 3 cut(s) 234, 319, 365
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 234, 319, 365
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 234, 319, 365
HaeIII GGCC 1 cut(s) 20
HapII CCGG 3 cut(s) 21, 210, 361
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 3 cut(s) 68, 257, 349
HpaII CCGG 3 cut(s) 21, 210, 361
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 73, 243
Hpy188III TCNNGA 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 321
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 231
KroI GCCGGC 1 cut(s) 360
KroNI GCCGGC 1 cut(s) 362
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 5 cut(s) 34, 223, 286, 307, 374
Lsp1109I GCAGC 2 cut(s) 245, 305
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 182, 290
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 8 cut(s) 54, 57, 77, 121, 131, 134, 137, 318
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 4 cut(s) 98, 262, 269, 275
MnlI CCTC 3 cut(s) 18, 318, 321
MreI CGCCGGCG 1 cut(s) 360
MroNI GCCGGC 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 86, 252
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 3 cut(s) 21, 210, 361
MspR9I CCNGG 2 cut(s) 22, 211
MvnI CGCG 1 cut(s) 231
NaeI GCCGGC 1 cut(s) 362
NciI CCSGG 2 cut(s) 22, 211
NdeII GATC 1 cut(s) 238
NgoMIV GCCGGC 1 cut(s) 360
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 68, 257, 349
PkrI GCNGC 3 cut(s) 235, 320, 366
PspN4I GGNNCC 1 cut(s) 344
PstI CTGCAG 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 86, 252
SatI GCNGC 3 cut(s) 234, 319, 365
Sau3AI GATC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 22, 211
SduI GDGCHC 1 cut(s) 345
SetI ASST 4 cut(s) 17, 176, 313, 381
SfcI CTRYAG 1 cut(s) 319
SgrAI CRCCGGYG 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 86, 252
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 4 cut(s) 98, 262, 269, 275
SsiI CCGC 4 cut(s) 187, 229, 316, 364
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 20, 209
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 296
TasI AATT 4 cut(s) 98, 262, 269, 275
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 3 cut(s) 68, 257, 349
TseI GCWGC 2 cut(s) 233, 318
TspGWI ACGGA 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.