RLG00000003708

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019448
Physical Location & Seq
Reverse (-)
51884440 .. 51885163
724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003708

Sequence Viewer

Length: 654 bp
ATGATCAGGAAAAAGCAGTCGGAATTCTCTGAGGTTCACTGGAACTGGGTTCCACTCGTCTTTCAGCCATCAATGTCCGCCTTCCTGTACGGAAGTTGTCTCAAGTTCTTGAGAACAGGATTGATCACTCTTTCTGTCGGTTCGCCGAGAGAACGACAAAATGAAATGATCAATCACACCTTCCGCTACGGCTTTGAGGAGCAGCAAGCACCTACTCCTAAAAAAATGAAAAGCAGCTTCATTCTCTCTTTTCTCATCCACCTCCATCTTCATCAGAGCTCCATTGTTCAGAGCCTCCATCATGATTTTCAATTCTGCAGACCAATTTCTCCTCTACTAGTACTGCAGGCTCTCCGAGAAACACCATTACCCCAAACTCAAATCGAGACCCAATCCAAAAGAACCCGAATTGAAACTCTAAATCCCCAAATCAACCACAAAAGAATCAAACAACGATTTAGATCAAGAAATGGATTTTCGGGTGAAGATTCAGAGGACCCATTTCGACCTATAAGTTTGAGGAGGAGTGGTGAGGTTGTCGGAGCTCATGATCTTCCGAAGCTCGGCCTGGACCTTGAAGAAGACTTGTCACAAGCTGCCTCTATTGTCGGAGCCGAGAATCTTGTCTCCTCTTCGTTCATCTCCAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.91

Weight (kDa)

9.59

Isoelectric Point (pI)

71.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019448)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001334 RLG00000002601 RLG00000003708 RLG00000005142 RLG00000020279
rosa_multiflora Rmu_ssc0000473.1_g000025
rosa_roxburghii Rroxscaffold_4G00320620
rosa_samantha Rh4DG215400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 184
AclWI GGATC 1 cut(s) 642
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 2 cut(s) 89, 342
AfiI CCNNNNNNNGG 1 cut(s) 563
AgsI TTSAA 3 cut(s) 311, 413, 578
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 5 cut(s) 237, 279, 545, 562, 596
AluI AGCT 5 cut(s) 237, 279, 545, 562, 596
Alw21I GWGCWC 2 cut(s) 281, 547
Alw26I GTCTC 3 cut(s) 104, 380, 631
AlwI GGATC 1 cut(s) 642
AlwNI CAGNNNCTG 1 cut(s) 651
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 3 cut(s) 202, 234, 596
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 496, 571
AsuHPI GGTGA 2 cut(s) 494, 542
AvaII GGWCC 2 cut(s) 496, 571
BanII GRGCYC 2 cut(s) 281, 547
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 2 cut(s) 281, 547
BbvI GCAGC 3 cut(s) 214, 246, 583
BccI CCATC 3 cut(s) 76, 273, 306
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 3 cut(s) 3, 123, 168
BcoDI GTCTC 3 cut(s) 104, 380, 631
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 2 cut(s) 316, 344
BisI GCNGC 3 cut(s) 203, 235, 597
BlsI GCNGC 3 cut(s) 204, 236, 598
BmcAI AGTACT 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 2 cut(s) 496, 571
BmgT120I GGNCC 2 cut(s) 496, 571
BmiI GGNNCC 3 cut(s) 51, 498, 613
BmrFI CCNGG 1 cut(s) 569
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 628
BpuEI CTTGAG 2 cut(s) 86, 130
BsaBI GATNNNNATC 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 44, 50
Bse8I GATNNNNATC 1 cut(s) 460
BseBI CCWGG 1 cut(s) 569
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 44, 50
BseRI GAGGAG 5 cut(s) 212, 321, 535, 538, 619
BseXI GCAGC 3 cut(s) 214, 246, 583
BshFI GGCC 1 cut(s) 567
BsiHKAI GWGCWC 2 cut(s) 281, 547
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 3 cut(s) 104, 380, 631
BsnI GGCC 1 cut(s) 567
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 281, 547
Bsp143I GATC 6 cut(s) 3, 123, 168, 461, 550, 647
BspACI CCGC 2 cut(s) 78, 184
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 2 cut(s) 301, 547
BspLI GGNNCC 3 cut(s) 51, 498, 613
BspMAI CTGCAG 2 cut(s) 320, 348
BspPI GGATC 1 cut(s) 642
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 44, 50
BssMI GATC 6 cut(s) 3, 123, 168, 461, 550, 647
Bst2UI CCWGG 1 cut(s) 569
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 207, 348
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 6 cut(s) 6, 126, 171, 464, 553, 650
BstMAI GTCTC 3 cut(s) 104, 380, 631
BstMBI GATC 6 cut(s) 3, 123, 168, 461, 550, 647
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 2 cut(s) 316, 344
BstV1I GCAGC 3 cut(s) 214, 246, 583
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 1 cut(s) 567
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 207, 348
CaiI CAGNNNCTG 1 cut(s) 651
CciI TCATGA 2 cut(s) 301, 547
Cfr13I GGNCC 2 cut(s) 496, 571
Csp6I GTAC 2 cut(s) 88, 341
CviAII CATG 2 cut(s) 302, 548
CviQI GTAC 2 cut(s) 88, 341
DdeI CTNAG 1 cut(s) 30
DpnI GATC 6 cut(s) 5, 125, 170, 463, 552, 649
DpnII GATC 6 cut(s) 3, 123, 168, 461, 550, 647
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 2 cut(s) 279, 545
Eco24I GRGCYC 2 cut(s) 281, 547
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 496, 571
Eco53kI GAGCTC 2 cut(s) 279, 545
EcoICRI GAGCTC 2 cut(s) 279, 545
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 567
EcoT38I GRGCYC 2 cut(s) 281, 547
FaeI CATG 2 cut(s) 305, 551
FaiI YATR 3 cut(s) 303, 512, 549
FatI CATG 2 cut(s) 301, 547
FbaI TGATCA 3 cut(s) 3, 123, 168
Fnu4HI GCNGC 3 cut(s) 203, 235, 597
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 281, 547
Fsp4HI GCNGC 3 cut(s) 203, 235, 597
FspBI CTAG 1 cut(s) 338
GluI GCNGC 3 cut(s) 203, 235, 597
GsuI CTGGAG 1 cut(s) 628
HaeIII GGCC 1 cut(s) 567
Hin1II CATG 2 cut(s) 305, 551
HinfI GANTC 3 cut(s) 444, 488, 619
HphI GGTGA 2 cut(s) 494, 542
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 9 cut(s) 22, 31, 276, 291, 356, 493, 542, 558, 611
Hpy188III TCNNGA 8 cut(s) 7, 109, 302, 385, 465, 548, 645, 651
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 91, 190
HpyCH4V TGCA 2 cut(s) 318, 346
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 2 cut(s) 305, 551
Ksp22I TGATCA 3 cut(s) 3, 123, 168
Kzo9I GATC 6 cut(s) 3, 123, 168, 461, 550, 647
LmnI GCTCC 4 cut(s) 199, 284, 542, 611
LpnPI CCDG 7 cut(s) 25, 31, 98, 102, 332, 554, 581
Lsp1109I GCAGC 3 cut(s) 214, 246, 583
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 588
MalI GATC 6 cut(s) 5, 125, 170, 463, 552, 649
MboI GATC 6 cut(s) 3, 123, 168, 461, 550, 647
MboII GAAGA 6 cut(s) 260, 497, 545, 590, 593, 624
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 2 cut(s) 281, 547
MluCI AATT 4 cut(s) 23, 311, 324, 408
MmeI TCCRAC 2 cut(s) 520, 589
MspR9I CCNGG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 569
NdeII GATC 6 cut(s) 3, 123, 168, 461, 550, 647
NlaIII CATG 2 cut(s) 305, 551
NlaIV GGNNCC 3 cut(s) 51, 498, 613
NmeAIII GCCGAG 3 cut(s) 171, 543, 640
NmuCI GTSAC 1 cut(s) 588
PagI TCATGA 2 cut(s) 301, 547
PfeI GAWTC 3 cut(s) 444, 488, 619
PkrI GCNGC 3 cut(s) 204, 236, 598
PpuMI RGGWCCY 1 cut(s) 496
Psp124BI GAGCTC 2 cut(s) 281, 547
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 51, 498, 613
PspPI GGNCC 2 cut(s) 496, 571
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 2 cut(s) 320, 348
PstNI CAGNNNCTG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 647
RsaI GTAC 2 cut(s) 89, 342
RsaNI GTAC 2 cut(s) 88, 341
SacI GAGCTC 2 cut(s) 281, 547
SatI GCNGC 3 cut(s) 203, 235, 597
Sau3AI GATC 6 cut(s) 3, 123, 168, 461, 550, 647
Sau96I GGNCC 2 cut(s) 496, 571
ScaI AGTACT 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 2 cut(s) 281, 547
SfcI CTRYAG 2 cut(s) 316, 344
SinI GGWCC 2 cut(s) 496, 571
SmlI CTYRAG 2 cut(s) 101, 109
SmoI CTYRAG 2 cut(s) 101, 109
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 4 cut(s) 23, 311, 324, 408
SsiI CCGC 2 cut(s) 78, 184
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 2 cut(s) 281, 547
StyD4I CCNGG 1 cut(s) 567
TaqI TCGA 2 cut(s) 384, 505
TasI AATT 4 cut(s) 23, 311, 324, 408
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 3 cut(s) 444, 488, 619
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 202, 234, 596
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 5 cut(s) 177, 229, 242, 260, 628
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 496, 571
XapI RAATTY 1 cut(s) 23
XspI CTAG 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.