RLG00000002601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019448
Physical Location & Seq
Forward (+)
36838998 .. 36839467
470 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002601

Sequence Viewer

Length: 357 bp
ATGGATTTTCGGGTGAAGATTCAGAGGACCCATTTGTATGATTCCAATTCCAAATTGGAATTACGGAGGCTGTGGTGTTTTGGGCTCGCGAATCCTTTTCTCCAGCGGCCTATAAGTTTGAGGAGGAGTGGTGAGATCCTGAGTGAAGATGGGCTTTCTGGAGAGGACCCAAGTTCAGCCCCAGTCCCACCATCTCTTAATGGCGGCGTAATCGCCCATGGCGGAGACCGACTTGGACCGCTGCAGGGCCCAGATGGTGGCCAGGGAGGAGATGGGCTGGAACTTGAGAGAGAGGGACGAGAGCCTTCGCCGGAGACCCGAAGCCTGGTCGAGACCGGAGGCCTGGGAAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.68

Weight (kDa)

5.04

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019448)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001334 RLG00000002601 RLG00000003708 RLG00000005142 RLG00000020279
rosa_multiflora Rmu_ssc0000473.1_g000025
rosa_roxburghii Rroxscaffold_4G00320620
rosa_samantha Rh4DG215400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AccII CGCG 1 cut(s) 89
AciI CCGC 4 cut(s) 106, 204, 222, 239
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 245, 257, 325
AjnI CCWGG 3 cut(s) 261, 324, 342
Alw26I GTCTC 3 cut(s) 219, 308, 326
AlwI GGATC 1 cut(s) 130
AoxI GGCC 4 cut(s) 107, 247, 259, 340
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 241
AspS9I GGNCC 5 cut(s) 27, 166, 236, 247, 248
AsuHPI GGTGA 2 cut(s) 25, 143
AvaII GGWCC 3 cut(s) 27, 166, 236
BaeGI GKGCMC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 2 cut(s) 87, 251
BbvI GCAGC 1 cut(s) 228
BccI CCATC 4 cut(s) 143, 199, 248, 266
BciT130I CCWGG 3 cut(s) 263, 326, 344
BcoDI GTCTC 3 cut(s) 219, 308, 326
BfmI CTRYAG 1 cut(s) 242
BisI GCNGC 3 cut(s) 107, 205, 242
BlsI GCNGC 3 cut(s) 108, 206, 243
Bme1390I CCNGG 3 cut(s) 263, 326, 344
Bme18I GGWCC 3 cut(s) 27, 166, 236
BmgT120I GGNCC 5 cut(s) 27, 166, 236, 247, 248
BmiI GGNNCC 3 cut(s) 29, 168, 249
BmrFI CCNGG 3 cut(s) 263, 326, 344
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 86, 180
BpuEI CTTGAG 1 cut(s) 305
BsaI GGTCTC 3 cut(s) 219, 308, 326
BsaJI CCNNGG 3 cut(s) 217, 262, 343
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 257, 325
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 3 cut(s) 263, 326, 344
BseDI CCNNGG 3 cut(s) 217, 262, 343
BseLI CCNNNNNNNGG 3 cut(s) 245, 257, 325
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 3 cut(s) 136, 139, 282
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 109, 249, 261, 342
BsiSI CCGG 2 cut(s) 311, 336
BslFI GGGAC 2 cut(s) 170, 309
BslI CCNNNNNNNGG 3 cut(s) 245, 257, 325
BsmAI GTCTC 3 cut(s) 219, 308, 326
BsmFI GGGAC 2 cut(s) 170, 309
BsnI GGCC 4 cut(s) 109, 249, 261, 342
Bso31I GGTCTC 3 cut(s) 219, 308, 326
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 87, 251
Bsp143I GATC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 217
Bsp68I TCGCGA 1 cut(s) 89
BspACI CCGC 4 cut(s) 106, 204, 222, 239
BspANI GGCC 4 cut(s) 109, 249, 261, 342
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 29, 168, 249
BspMAI CTGCAG 1 cut(s) 246
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 3 cut(s) 219, 308, 326
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 217, 262, 343
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 3 cut(s) 263, 326, 344
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 3 cut(s) 219, 308, 326
BstMBI GATC 1 cut(s) 135
BstNI CCWGG 3 cut(s) 263, 326, 344
BstSCI CCNGG 3 cut(s) 261, 324, 342
BstSFI CTRYAG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 4 cut(s) 109, 249, 261, 342
BtgI CCRYGG 1 cut(s) 217
BtuMI TCGCGA 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 5 cut(s) 27, 166, 236, 247, 248
CviAII CATG 1 cut(s) 218
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 259
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 87, 251
Eco31I GGTCTC 3 cut(s) 219, 308, 326
Eco47I GGWCC 3 cut(s) 27, 166, 236
EcoO109I RGGNCCY 3 cut(s) 27, 166, 247
EcoRII CCWGG 3 cut(s) 261, 324, 342
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 87, 251
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 39, 113, 219
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 2 cut(s) 170, 309
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 107, 205, 242
FriOI GRGCYC 2 cut(s) 87, 251
Fsp4HI GCNGC 3 cut(s) 107, 205, 242
GluI GCNGC 3 cut(s) 107, 205, 242
GsuI CTGGAG 2 cut(s) 86, 180
HaeIII GGCC 4 cut(s) 109, 249, 261, 342
HapII CCGG 2 cut(s) 311, 336
Hin1II CATG 1 cut(s) 221
HinfI GANTC 3 cut(s) 19, 41, 91
HpaII CCGG 2 cut(s) 311, 336
HphI GGTGA 2 cut(s) 25, 143
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 4 cut(s) 88, 139, 159, 331
HpyAV CCTTC 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 228
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 28, 158
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 87, 251
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 46, 53, 59
MluNI TGGCCA 1 cut(s) 261
MnlI CCTC 8 cut(s) 18, 60, 114, 117, 157, 260, 286, 332
Mox20I TGGCCA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 261
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 106, 241
MspI CCGG 2 cut(s) 311, 336
MspR9I CCNGG 3 cut(s) 263, 326, 344
MvaI CCWGG 3 cut(s) 263, 326, 344
MvnI CGCG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 217
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 3 cut(s) 29, 168, 249
NruI TCGCGA 1 cut(s) 89
PceI AGGCCT 1 cut(s) 342
PfeI GAWTC 3 cut(s) 19, 41, 91
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 3 cut(s) 108, 206, 243
PpuMI RGGWCCY 2 cut(s) 27, 166
Psp5II RGGWCCY 2 cut(s) 27, 166
Psp6I CCWGG 3 cut(s) 261, 324, 342
PspGI CCWGG 3 cut(s) 261, 324, 342
PspN4I GGNNCC 3 cut(s) 29, 168, 249
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 5 cut(s) 27, 166, 236, 247, 248
PspPPI RGGWCCY 2 cut(s) 27, 166
PstI CTGCAG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 135
RruI TCGCGA 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 107, 205, 242
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 5 cut(s) 27, 166, 236, 247, 248
ScrFI CCNGG 3 cut(s) 263, 326, 344
SduI GDGCHC 2 cut(s) 87, 251
SfcI CTRYAG 1 cut(s) 242
SinI GGWCC 3 cut(s) 27, 166, 236
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 46, 53, 59
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 4 cut(s) 106, 204, 222, 239
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 261, 324, 342
StyI CCWWGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 330
TaqII GACCGA 1 cut(s) 243
TasI AATT 3 cut(s) 46, 53, 59
TauI GCSGC 2 cut(s) 109, 207
TfiI GAWTC 3 cut(s) 19, 41, 91
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 3 cut(s) 27, 166, 236
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.