Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019985

Physical Location & Seq

Genomic Coordinates Forward (+)

17254137 .. 17254633

Gene Structure 497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCTCCGACGACTTCTCCCCCATGTCCGCCACCGTTGACGACAAGAAGTACGGGTTCAAGAGGCCTATGTCTTTTAATCATGACCCCTTGGCCTTTTGTGGCTTCGCTTCTTCCTCTTCTTATCTCCTTCATAACCACTCTCATATCCATCACCGCCTGGATCTCTTGTCACCGATCACCACTATTAATCACCACGCTCCTACACCACTTTTCACCACCTCCGATTACAGCCCTTATCCCCAATCCTACCCTCCATCACAGTTGTATTTTTCACTGGAGCTCAACCTCGACAACCTCAAAGCCATCATAGTCCTCGGCAAGGGAGACTTAGGGACCGTCTTTTTGGTCCACCACTCGAAATCTCAACCGTTCGGCGTCTGCCCTTTCGCTCCAATTCTTCCTCCAGACCAAGCTCAACATCGGCTTGATCTGACTCTTCGGTTTCAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

6.82

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019985)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001544 RLG00000034917
rosa_multiflora	Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha	Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 157
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	61, 449
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	283, 416
AluI	AGCT	2 cut(s)	283, 416
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	3 cut(s)	3, 65, 93
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	336, 349
AsuHPI	GGTGA	5 cut(s)	146, 165, 172, 185, 208
AvaII	GGWCC	2 cut(s)	336, 349
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	3 cut(s)	159, 265, 314
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	336, 349
BmgT120I	GGNCC	2 cut(s)	336, 349
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	299, 390
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	90, 316
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	90, 316
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	5, 67, 95
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	5, 67, 95
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	163, 177, 430
BspACI	CCGC	2 cut(s)	30, 157
BspANI	GGCC	3 cut(s)	5, 67, 95
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	90, 316
BssMI	GATC	3 cut(s)	163, 177, 430
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	4 cut(s)	37, 264, 340, 372
Bst6I	CTCTTC	2 cut(s)	124, 444
BstACI	GRCGYC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstKTI	GATC	3 cut(s)	166, 180, 433
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	163, 177, 430
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	5, 67, 95
BtsIMutI	CAGTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	336, 349
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	25, 83
CviJI	RGCY	9 cut(s)	5, 67, 95, 105, 234, 283, 305, 416, 427
CviKI_1	RGCY	9 cut(s)	5, 67, 95, 105, 234, 283, 305, 416, 427
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	165, 179, 432
DpnII	GATC	3 cut(s)	163, 177, 430
Eam1104I	CTCTTC	2 cut(s)	124, 444
EarI	CTCTTC	2 cut(s)	124, 444
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	336, 349
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	28, 86
FaiI	YATR	6 cut(s)	26, 71, 84, 135, 147, 311
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	24, 82
FriOI	GRGCYC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	299, 390
HaeIII	GGCC	3 cut(s)	5, 67, 95
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	28, 86
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	436
HphI	GGTGA	5 cut(s)	146, 165, 172, 185, 208
Hpy166II	GTNNAC	2 cut(s)	40, 352
Hpy188I	TCNGA	3 cut(s)	10, 226, 435
Hpy188III	TCNNGA	3 cut(s)	61, 83, 407
Hpy8I	GTNNAC	2 cut(s)	40, 352
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	4 cut(s)	37, 264, 340, 372
HpyF3I	CTNAG	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	28, 86
Kzo9I	GATC	3 cut(s)	163, 177, 430
LmnI	GCTCC	3 cut(s)	205, 280, 397
LpnPI	CCDG	4 cut(s)	146, 173, 263, 420
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	3 cut(s)	165, 179, 432
MboI	GATC	3 cut(s)	163, 177, 430
MboII	GAAGA	4 cut(s)	105, 111, 392, 431
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	16, 57, 127, 232, 264, 299, 308, 326, 414
MseI	TTAA	2 cut(s)	78, 189
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	3 cut(s)	163, 177, 430
NlaIII	CATG	2 cut(s)	28, 86
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	171
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	67
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	336, 349
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	78, 189
Sau3AI	GATC	3 cut(s)	163, 177, 430
Sau96I	GGNCC	2 cut(s)	336, 349
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	6 cut(s)	224, 285, 291, 300, 418, 455
SinI	GGWCC	2 cut(s)	336, 349
Sse9I	AATT	1 cut(s)	396
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	2 cut(s)	30, 157
SstI	GAGCTC	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	4 cut(s)	37, 264, 340, 372
TaqI	TCGA	2 cut(s)	291, 359
TasI	AATT	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	78, 189
Tru9I	TTAA	2 cut(s)	78, 189
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	336, 349
VspI	ATTAAT	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.