RLG00000034917

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019985
Physical Location & Seq
Reverse (-)
56963259 .. 56964014
756 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034917

Sequence Viewer

Length: 462 bp
ATGGCCTCCGACGACTTCTCCCCCGTGTTAGCCACCATTGATGATGAGAATTTTGGGTTCAAGAAGCCTATATCTTTTTCCTTGGCAAGGGAGACATGGGGATCGTCTTTCCGGTCCACGACCCGAAATCTCACCCGTCCGGCATTTGCCCTTTCACTCCAGTTCTTCCTCCTGACCAAGCTCAACACTGACCCGATCCGACTCTTCTGCTTCAGAGGTAGTGACAGCGGCGGTCTACGCGACGAAGTGGCAGAGGCTGTGGCCATCGAAGTGGTTAGAAAGAGAAGAGCTGAAGTGAAAGAAGCTTATGGAGCCACAACTCCTCCTTTGCAGCCGAGTAGTGGTCCACTGCTGATGGTAGCATCGAATTCCAGAAGCTGCTTCCGATTTCCAATTGAGGAACCTGAGAGCGAAATGACATGGCTTCTAGAGATGAAGGCGAGGTTGGTTCATAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

6.6

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019985)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001544 RLG00000034917
rosa_multiflora Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AccII CGCG 1 cut(s) 240
AciI CCGC 2 cut(s) 228, 231
AclWI GGATC 2 cut(s) 109, 190
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 2 cut(s) 49, 367
AcuI CTGAAG 2 cut(s) 196, 312
AfiI CCNNNNNNNGG 2 cut(s) 87, 341
AgsI TTSAA 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 4 cut(s) 181, 290, 305, 378
AluI AGCT 4 cut(s) 181, 290, 305, 378
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 109, 190
AlwNI CAGNNNCTG 2 cut(s) 257, 378
AoxI GGCC 2 cut(s) 3, 261
ApeKI GCWGC 2 cut(s) 331, 378
ApoI RAATTY 2 cut(s) 49, 367
AspS9I GGNCC 2 cut(s) 114, 344
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 2 cut(s) 114, 344
BalI TGGCCA 1 cut(s) 263
BbvI GCAGC 2 cut(s) 343, 365
BccI CCATC 2 cut(s) 272, 349
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 428
BisI GCNGC 3 cut(s) 229, 332, 379
BlsI GCNGC 3 cut(s) 230, 333, 380
Bme18I GGWCC 2 cut(s) 114, 344
BmgT120I GGNCC 2 cut(s) 114, 344
BmiI GGNNCC 2 cut(s) 313, 402
BmsI GCATC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 3 cut(s) 32, 307, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 341
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 87, 341
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 343, 365
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 5, 263
BsiSI CCGG 2 cut(s) 112, 140
BslI CCNNNNNNNGG 2 cut(s) 87, 341
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 2 cut(s) 5, 263
Bsp143I GATC 2 cut(s) 101, 195
BspACI CCGC 2 cut(s) 228, 231
BspANI GGCC 2 cut(s) 5, 263
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 313, 402
BspPI GGATC 2 cut(s) 109, 190
BspQI GCTCTTC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 101, 195
BssT1I CCWWGG 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 209, 280
BstDEI CTNAG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 2 cut(s) 104, 198
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 101, 195
BstMWI GCNNNNNNNGC 2 cut(s) 237, 311
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 343, 365
BstXI CCANNNNNNTGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 5, 263
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 186, 347
CaiI CAGNNNCTG 2 cut(s) 257, 378
Cfr13I GGNCC 2 cut(s) 114, 344
CviAII CATG 2 cut(s) 96, 420
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 103, 197
DpnII GATC 2 cut(s) 101, 195
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 209, 280
EarI CTCTTC 2 cut(s) 209, 280
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 114, 344
Eco57I CTGAAG 2 cut(s) 196, 312
EcoNI CCTNNNNNAGG 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 99, 423
FaiI YATR 5 cut(s) 71, 97, 309, 421, 453
FatI CATG 2 cut(s) 95, 419
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 229, 332, 379
Fsp4HI GCNGC 3 cut(s) 229, 332, 379
FspBI CTAG 1 cut(s) 428
GluI GCNGC 3 cut(s) 229, 332, 379
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 5, 263
HapII CCGG 2 cut(s) 112, 140
Hin1II CATG 2 cut(s) 99, 423
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 112, 140
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 117, 236, 347
Hpy188I TCNGA 4 cut(s) 10, 200, 215, 386
Hpy188III TCNNGA 4 cut(s) 61, 172, 372, 428
Hpy8I GTNNAC 3 cut(s) 117, 236, 347
Hpy99I CGWCG 2 cut(s) 14, 245
HpyAV CCTTC 1 cut(s) 430
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 311
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 2 cut(s) 99, 423
Kzo9I GATC 2 cut(s) 101, 195
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 125, 153, 173, 185, 385, 417
Lsp1109I GCAGC 2 cut(s) 343, 365
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 103, 197
MboI GATC 2 cut(s) 101, 195
MboII GAAGA 3 cut(s) 157, 196, 297
MfeI CAATTG 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 4 cut(s) 49, 367, 393, 457
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 2 cut(s) 33, 223
MnlI CCTC 7 cut(s) 16, 179, 209, 247, 333, 391, 435
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 112, 140
MunI CAATTG 1 cut(s) 393
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 237, 311
NdeII GATC 2 cut(s) 101, 195
NlaIII CATG 2 cut(s) 99, 423
NlaIV GGNNCC 2 cut(s) 313, 402
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 280
PkrI GCNGC 3 cut(s) 230, 333, 380
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 313, 402
PspPI GGNCC 2 cut(s) 114, 344
PstNI CAGNNNCTG 2 cut(s) 257, 378
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 280
SatI GCNGC 3 cut(s) 229, 332, 379
Sau3AI GATC 2 cut(s) 101, 195
Sau96I GGNCC 2 cut(s) 114, 344
SchI GAGTC 1 cut(s) 195
SetI ASST 7 cut(s) 183, 220, 292, 307, 380, 406, 446
SfaNI GCATC 1 cut(s) 371
SinI GGWCC 2 cut(s) 114, 344
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 4 cut(s) 49, 367, 393, 457
SsiI CCGC 2 cut(s) 228, 231
SspMI CTAG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 2 cut(s) 267, 365
TasI AATT 4 cut(s) 49, 367, 393, 457
TauI GCSGC 1 cut(s) 231
TscAI CASTG 2 cut(s) 193, 354
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 331, 378
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 440, 449
TspRI CASTG 2 cut(s) 193, 354
VpaK11BI GGWCC 2 cut(s) 114, 344
XagI CCTNNNNNAGG 1 cut(s) 85
XapI RAATTY 2 cut(s) 49, 367
XbaI TCTAGA 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.