Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019985

Physical Location & Seq

Genomic Coordinates Forward (+)

55701066 .. 55702610

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCGCATGGTGGATAAAGATGCCGATGGAAGAATCACTGAAGAAGAAGTCAGAGAGATAGGTGAAACTGGCCGGCTAATTATTAGTCTCAGTGCTTCTGCGAACAAACCGTCCAACATTCAGAAACAAGCTCAAGAATATGCAACAGTCATTATGGAAGAGCTTGACCTAGACAATGTTGGCTACATTATGGTTGAAAACTTGGAAACTTTGTTGCTGCAAGCTCCGGTGCACAAATCGGTCACGGTAAGCGACAGCCGAATTCTGAGTCAGCTGCTGAGTCAGAAGCTGAAGCCAACACGAGACAACAACCCAATATATAACAAGATAGTACCAGATAACCAGAAGATCAACCACTCTCATATCCATCACCGCCTGGATCTCTTTTCCTTATCCTTTTCGTTGTCATCGATCACCTCCACTGATCACCACACCTCTGCACCGCCTTTCACCACCTCCGATTACAGCCCCTATCCCCAATCCTACTCTCCATCACAGTCAGATTTTTCATTGGAGCTTGACCTCAACAACCTCAAAGCCATCATAGTCCTTGGCAAGGGAGACATGGGGACCGTCTTTCTGGTCCACGACCCGAAATCTCACCCGTCTGGCGTTTGCCCTTTCACTCCAGTTCTTCCTCGGACCAAGCTCAACACCGACCTAATTCGACTCTCCGACTTCAGAGGTAGTGACAGTGGCGGTCTGGGCGATGAAGTGGCAGGGCTTGGGGTCGTCGAAGTGGTTCAGAAGAGAAGAGCTGGAGTGAGAGAAGCTTCTGGAGCCAAGACTCCTCCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009987 GO:0010941 GO:0012505 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0023052 GO:0033500 GO:0033554 GO:0042592 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071944 GO:0072593 GO:0098542 GO:0104004

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

266

Amino Acids

29.21

Weight (kDa)

5.84

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019985)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001544 RLG00000034917
rosa_multiflora	Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha	Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	3 cut(s)	373, 443, 699
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	3 cut(s)	60, 311, 664
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	375
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	9 cut(s)	131, 163, 224, 274, 289, 517, 649, 758, 773
AluI	AGCT	9 cut(s)	131, 163, 224, 274, 289, 517, 649, 758, 773
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	92, 297, 555
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	2 cut(s)	277, 289
AoxI	GGCC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	217, 274
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	5 cut(s)	95, 127, 253, 285, 778
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	570, 583, 642
AsuHPI	GGTGA	6 cut(s)	74, 362, 406, 419, 442, 593
AvaII	GGWCC	3 cut(s)	570, 583, 642
BaeGI	GKGCMC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	204, 261
BccI	CCATC	4 cut(s)	20, 375, 499, 548
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	92, 297, 555
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	218, 275
BlsI	GCNGC	2 cut(s)	219, 276
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	3 cut(s)	570, 583, 642
BmgT120I	GGNCC	3 cut(s)	570, 583, 642
BmiI	GGNNCC	2 cut(s)	571, 781
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	10
BpmI	CTGGAG	3 cut(s)	612, 780, 798
BpuEI	CTTGAG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	550, 638
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	73, 629
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	550, 638
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	3 cut(s)	103, 257, 269
BseNI	ACTGG	2 cut(s)	73, 629
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	204, 261
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	73, 227
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	3 cut(s)	92, 297, 555
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	348, 379, 411, 424
BspACI	CCGC	3 cut(s)	373, 443, 699
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	3 cut(s)	102, 258, 270
BspDI	ATCGAT	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	571, 781
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	2 cut(s)	153, 748
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	73, 629
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	550, 638
BssMI	GATC	4 cut(s)	348, 379, 411, 424
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	550
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	6 cut(s)	111, 148, 247, 498, 574, 695
Bst6I	CTCTTC	3 cut(s)	153, 743, 748
BstC8I	GCNNGC	2 cut(s)	74, 222
BstDEI	CTNAG	3 cut(s)	89, 266, 278
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	351, 382, 414, 427
BstMAI	GTCTC	3 cut(s)	92, 297, 555
BstMBI	GATC	4 cut(s)	348, 379, 411, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 779
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	204, 261
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	723
BtsIMutI	CAGTG	4 cut(s)	36, 97, 420, 700
Cac8I	GCNNGC	2 cut(s)	74, 222
CaiI	CAGNNNCTG	2 cut(s)	277, 289
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	570, 583, 642
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	7, 565
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	3 cut(s)	89, 266, 278
DpnI	GATC	4 cut(s)	350, 381, 413, 426
DpnII	GATC	4 cut(s)	348, 379, 411, 424
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	153, 743, 748
EarI	CTCTTC	3 cut(s)	153, 743, 748
Eco130I	CCWWGG	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	570, 583, 642
Eco57I	CTGAAG	3 cut(s)	60, 311, 664
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	2 cut(s)	10, 568
FaiI	YATR	9 cut(s)	8, 141, 155, 191, 319, 321, 363, 545, 566
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	6, 564
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	218, 275
Fsp4HI	GCNGC	2 cut(s)	218, 275
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	170
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	218, 275
GsuI	CTGGAG	3 cut(s)	612, 780, 798
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	73, 227
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	10, 568
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	5 cut(s)	33, 268, 280, 669, 787
HpaII	CCGG	2 cut(s)	73, 227
HphI	GGTGA	6 cut(s)	74, 362, 406, 419, 442, 593
Hpy166II	GTNNAC	2 cut(s)	232, 586
Hpy188III	TCNNGA	2 cut(s)	134, 777
Hpy8I	GTNNAC	2 cut(s)	232, 586
Hpy99I	CGWCG	1 cut(s)	737
HpyCH4III	ACNGT	6 cut(s)	111, 148, 247, 498, 574, 695
HpyCH4V	TGCA	4 cut(s)	143, 220, 232, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 779
HpyF3I	CTNAG	3 cut(s)	89, 266, 278
Hsp92II	CATG	2 cut(s)	10, 568
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	348, 379, 411, 424
LguI	GCTCTTC	2 cut(s)	153, 748
LmnI	GCTCC	3 cut(s)	229, 514, 779
Lsp1109I	GCAGC	2 cut(s)	204, 261
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	241, 689
MalI	GATC	4 cut(s)	350, 381, 413, 426
MboI	GATC	4 cut(s)	348, 379, 411, 424
MboII	GAAGA	8 cut(s)	42, 53, 56, 170, 358, 626, 760, 765
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	78, 261, 663
MlyI	GAGTC	4 cut(s)	277, 289, 663, 781
MmeI	TCCRAC	2 cut(s)	138, 699
MnlI	CCTC	8 cut(s)	427, 445, 466, 533, 542, 648, 677, 801
MroNI	GCCGGC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	2 cut(s)	73, 227
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	705, 779
NaeI	GCCGGC	1 cut(s)	74
NdeII	GATC	4 cut(s)	348, 379, 411, 424
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	10, 568
NlaIV	GGNNCC	2 cut(s)	571, 781
NmuCI	GTSAC	2 cut(s)	241, 689
NsbI	TGCGCA	1 cut(s)	5
PciSI	GCTCTTC	2 cut(s)	153, 748
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	219, 276
PleI	GAGTC	4 cut(s)	276, 288, 663, 781
PpsI	GAGTC	4 cut(s)	276, 288, 663, 781
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	571, 781
PspPI	GGNCC	3 cut(s)	570, 583, 642
PstNI	CAGNNNCTG	2 cut(s)	277, 289
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SapI	GCTCTTC	2 cut(s)	153, 748
SatI	GCNGC	2 cut(s)	218, 275
Sau3AI	GATC	4 cut(s)	348, 379, 411, 424
Sau96I	GGNCC	3 cut(s)	570, 583, 642
SchI	GAGTC	4 cut(s)	277, 289, 663, 781
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	3 cut(s)	570, 583, 642
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	78, 261, 663
SsiI	CCGC	3 cut(s)	373, 443, 699
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	6 cut(s)	111, 148, 247, 498, 574, 695
TaqI	TCGA	3 cut(s)	410, 667, 735
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	78, 261, 663
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	4 cut(s)	43, 97, 427, 700
TseFI	GTSAC	2 cut(s)	241, 689
TseI	GCWGC	2 cut(s)	217, 274
Tsp45I	GTSAC	2 cut(s)	241, 689
TspDTI	ATGAA	2 cut(s)	498, 726
TspRI	CASTG	4 cut(s)	43, 97, 427, 700
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	570, 583, 642
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.