Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020631.1

Orthogroup ID

OG0019985

Physical Location & Seq

Genomic Coordinates Forward (+)

5242 .. 8134

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020631.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgagttatcgggttgtcattcgtgacatgtcggtttctcattggatcggggtcgcggcgctatgggacccctctctcggattgaagccttccccagtcggatccgatggatatgacctgagcaaagtagctctcggcgtttccactagacggcgatcaccaccaggcgcctttctctacggcttcaacacctcgatccacgaaccagaccatctgccttcctctttgaggcaacgcgacatgaaccctctcatcctaccatacagtcgatgcccttccctatcaaattctcccaactcacaaggtagcaccgttgtcaacccacaacctatcctcttgctggaccacagaaatctggacacgaggtccactctggtctatccgatggccccgcggcgagagcgtacaattattagtctcagtgcttctgcgaacaaaccctccaacattcagaaacaagctcaggaatatgcaacgctcattatggaagagcttggcccagacaatgttggctacattatggttgaaaacttggaaactttgttgctgcaagctttggtgcacaaattggtcacgtcggatttttcattggagctcaacctcgacaacctcaaagccatcatagtccttgacaaaggagacatggggaccgtctttgtggtccatgacccgaaatctcacccgtctggtgtctgccctttcgctccagttcttcctcggaccaagctcaacaccgacatgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009987 GO:0010941 GO:0012505 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0023052 GO:0033500 GO:0033554 GO:0042592 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071944 GO:0072593 GO:0098542 GO:0104004

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

248

Amino Acids

27.33

Weight (kDa)

7.06

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019985)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001544 RLG00000034917
rosa_multiflora	Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha	Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	3 cut(s)	56, 237, 394
AciI	CCGC	3 cut(s)	56, 392, 394
AclWI	GGATC	4 cut(s)	53, 96, 109, 190
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	4 cut(s)	77, 150, 228, 340
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	85, 187, 527
AhdI	GACNNNNNGTC	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	6 cut(s)	131, 461, 493, 554, 595, 727
AluI	AGCT	6 cut(s)	131, 461, 493, 554, 595, 727
Alw21I	GWGCWC	2 cut(s)	564, 597
Alw26I	GTCTC	2 cut(s)	422, 633
Alw44I	GTGCAC	1 cut(s)	560
AlwI	GGATC	4 cut(s)	53, 96, 109, 190
AoxI	GGCC	2 cut(s)	387, 496
ApaLI	GTGCAC	1 cut(s)	560
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	61, 170
AspS9I	GGNCC	8 cut(s)	67, 343, 366, 388, 497, 648, 661, 720
AsuHPI	GGTGA	2 cut(s)	150, 671
AvaII	GGWCC	6 cut(s)	67, 343, 366, 648, 661, 720
BaeGI	GKGCMC	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	597
BauI	CACGAG	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	564, 597
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	4 cut(s)	101, 219, 379, 626
BceAI	ACGGC	2 cut(s)	167, 196
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	422, 633
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	2 cut(s)	62, 171
BisI	GCNGC	3 cut(s)	57, 395, 548
BlsI	GCNGC	3 cut(s)	58, 396, 549
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	6 cut(s)	67, 343, 366, 648, 661, 720
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	576
BmgT120I	GGNCC	8 cut(s)	67, 343, 366, 388, 497, 648, 661, 720
BmiI	GGNNCC	6 cut(s)	68, 69, 103, 169, 390, 649
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	2 cut(s)	119, 462
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	392, 716
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 150, 228, 340
Bse1I	ACTGG	2 cut(s)	95, 707
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	392, 716
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	4 cut(s)	77, 150, 228, 340
BseMII	CTCAG	3 cut(s)	110, 433, 476
BseNI	ACTGG	2 cut(s)	95, 707
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	534
Bsh1236I	CGCG	3 cut(s)	56, 237, 394
BshFI	GGCC	2 cut(s)	389, 498
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	564, 597
BslFI	GGGAC	2 cut(s)	80, 661
BslI	CCNNNNNNNGG	4 cut(s)	77, 150, 228, 340
BsmAI	GTCTC	2 cut(s)	422, 633
BsmFI	GGGAC	2 cut(s)	80, 661
BsnI	GGCC	2 cut(s)	389, 498
Bsp1286I	GDGCHC	2 cut(s)	564, 597
Bsp143I	GATC	5 cut(s)	45, 101, 155, 195, 741
BspACI	CCGC	3 cut(s)	56, 392, 394
BspANI	GGCC	2 cut(s)	389, 498
BspCNI	CTCAG	3 cut(s)	111, 432, 475
BspFNI	CGCG	3 cut(s)	56, 237, 394
BspLI	GGNNCC	6 cut(s)	68, 69, 103, 169, 390, 649
BspPI	GGATC	4 cut(s)	53, 96, 109, 190
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	95, 707
BssECI	CCNNGG	2 cut(s)	392, 716
BssMI	GATC	5 cut(s)	45, 101, 155, 195, 741
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	361
Bst2BI	CACGAG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	266, 313, 652
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	119, 419, 462
BstDSI	CCRYGG	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	3 cut(s)	56, 237, 394
BstH2I	RGCGCY	2 cut(s)	62, 171
BstHHI	GCGC	2 cut(s)	61, 170
BstKTI	GATC	5 cut(s)	48, 104, 158, 198, 744
BstMAI	GTCTC	2 cut(s)	422, 633
BstMBI	GATC	5 cut(s)	45, 101, 155, 195, 741
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	3 cut(s)	56, 237, 394
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	389, 498
BtgI	CCRYGG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	2 cut(s)	61, 170
Cfr13I	GGNCC	8 cut(s)	67, 343, 366, 388, 497, 648, 661, 720
Cfr42I	CCGCGG	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	5 cut(s)	28, 241, 643, 665, 739
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	3 cut(s)	119, 419, 462
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	5 cut(s)	47, 103, 157, 197, 743
DpnII	GATC	5 cut(s)	45, 101, 155, 195, 741
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	6 cut(s)	67, 343, 366, 648, 661, 720
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	597
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	5 cut(s)	31, 244, 646, 668, 742
FaqI	GGGAC	2 cut(s)	80, 661
FatI	CATG	5 cut(s)	27, 240, 642, 664, 738
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	57, 395, 548
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	3 cut(s)	57, 395, 548
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	60, 169
GluI	GCNGC	3 cut(s)	57, 395, 548
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	2 cut(s)	62, 171
HaeIII	GGCC	2 cut(s)	389, 498
HhaI	GCGC	2 cut(s)	61, 170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	31, 244, 646, 668, 742
Hin6I	GCGC	2 cut(s)	59, 168
HinP1I	GCGC	2 cut(s)	59, 168
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	552
HphI	GGTGA	2 cut(s)	150, 671
Hpy166II	GTNNAC	3 cut(s)	319, 369, 562
Hpy188I	TCNGA	7 cut(s)	80, 101, 106, 384, 453, 580, 720
Hpy188III	TCNNGA	3 cut(s)	23, 356, 464
Hpy8I	GTNNAC	3 cut(s)	319, 369, 562
Hpy99I	CGWCG	1 cut(s)	580
HpyAV	CCTTC	3 cut(s)	99, 228, 285
HpyCH4III	ACNGT	3 cut(s)	266, 313, 652
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	3 cut(s)	473, 550, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	3 cut(s)	119, 419, 462
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	31, 244, 646, 668, 742
HspAI	GCGC	2 cut(s)	59, 168
KasI	GGCGCC	1 cut(s)	167
KflI	GGGWCCC	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	45, 101, 155, 195, 741
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	592, 709
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	23, 571
MalI	GATC	5 cut(s)	47, 103, 157, 197, 743
MboI	GATC	5 cut(s)	45, 101, 155, 195, 741
MboII	GAAGA	2 cut(s)	500, 704
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	564, 597
MluCI	AATT	3 cut(s)	286, 408, 566
Mly113I	GGCGCC	1 cut(s)	168
MmeI	TCCRAC	3 cut(s)	79, 468, 558
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	3 cut(s)	56, 237, 394
MwoI	GCNNNNNNNGC	1 cut(s)	400
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	5 cut(s)	45, 101, 155, 195, 741
NlaIII	CATG	5 cut(s)	31, 244, 646, 668, 742
NlaIV	GGNNCC	6 cut(s)	68, 69, 103, 169, 390, 649
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	23, 571
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	58, 396, 549
PluTI	GGCGCC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	67
PscI	ACATGT	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	6 cut(s)	68, 69, 103, 169, 390, 649
PspPI	GGNCC	8 cut(s)	67, 343, 366, 388, 497, 648, 661, 720
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	597
SacII	CCGCGG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	3 cut(s)	57, 395, 548
Sau3AI	GATC	5 cut(s)	45, 101, 155, 195, 741
Sau96I	GGNCC	8 cut(s)	67, 343, 366, 388, 497, 648, 661, 720
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	564, 597
SfaNI	GCATC	1 cut(s)	260
SfoI	GGCGCC	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	395
SgrBI	CCGCGG	1 cut(s)	395
SinI	GGWCC	6 cut(s)	67, 343, 366, 648, 661, 720
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	286, 408, 566
SsiI	CCGC	3 cut(s)	56, 392, 394
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	266, 313, 652
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	194, 268, 603
TasI	AATT	3 cut(s)	286, 408, 566
TauI	GCSGC	2 cut(s)	59, 397
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	23, 571
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	2 cut(s)	23, 571
TspDTI	ATGAA	2 cut(s)	257, 576
TspRI	CASTG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	560
VpaK11BI	GGWCC	6 cut(s)	67, 343, 366, 648, 661, 720
XagI	CCTNNNNNAGG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.