Rmu_sc0002816.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002816.1
OG0019985
Physical Location & Seq
Reverse (-)
799 .. 1161
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002816.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atggggacagtctttgtggtccatgacccgaaatctcaccagtctggcgtctgccctttcgctccagttcttcctcggaccaagctcaacaccgacctgatccaactctccagctttagaggtagtgacagtggcggtttggacgaggaagtggctggggctggggctgtcgaagtgtttcgaaagagaagagttggagtgagagaagcttctggagccaagactcttcctttgcagctaagtagtggtctgctgccgatggtagaatcggattccggaagctgcttccgatttccaattgaggaacttgagagcgaaatgacatggcttttggagatgaaggcgaggttggttcagaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.03

Weight (kDa)

5.67

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019985)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001544 RLG00000034917
rosa_multiflora Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 48
AjuI GAANNNNNNNTTGG 1 cut(s) 332
AluBI AGCT 5 cut(s) 85, 114, 209, 238, 282
AluI AGCT 5 cut(s) 85, 114, 209, 238, 282
AlwI GGATC 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 3 cut(s) 235, 253, 282
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 313, 345
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 19, 78
AsuHPI GGTGA 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 2 cut(s) 19, 78
BbvI GCAGC 3 cut(s) 240, 247, 269
BccI CCATC 1 cut(s) 253
BisI GCNGC 3 cut(s) 236, 254, 283
BlsI GCNGC 3 cut(s) 237, 255, 284
Bme18I GGWCC 2 cut(s) 19, 78
BmgT120I GGNCC 2 cut(s) 19, 78
BmiI GGNNCC 1 cut(s) 217
BpmI CTGGAG 3 cut(s) 48, 94, 234
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 40, 65
BseAI TCCGGA 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 40, 65
BseXI GCAGC 3 cut(s) 240, 247, 269
BseYI CCCAGC 2 cut(s) 155, 161
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 181
BsrI ACTGG 2 cut(s) 40, 65
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 10, 131
Bst6I CTCTTC 2 cut(s) 184, 231
BstACI GRCGYC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 239
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 240, 247, 269
BtsIMutI CAGTG 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 19, 78
CseI GACGC 1 cut(s) 37
CviAII CATG 2 cut(s) 23, 324
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 184, 231
EarI CTCTTC 2 cut(s) 184, 231
Eco47I GGWCC 2 cut(s) 19, 78
FaeI CATG 2 cut(s) 26, 327
FaiI YATR 2 cut(s) 24, 325
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 22, 323
Fnu4HI GCNGC 3 cut(s) 236, 254, 283
Fsp4HI GCNGC 3 cut(s) 236, 254, 283
GluI GCNGC 3 cut(s) 236, 254, 283
GsaI CCCAGC 2 cut(s) 159, 165
GsuI CTGGAG 3 cut(s) 48, 94, 234
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 26, 327
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 3 cut(s) 223, 266, 272
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 78, 271, 290, 357
Hpy188III TCNNGA 2 cut(s) 213, 276
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 2 cut(s) 10, 131
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 26, 327
Kpn2I TCCGGA 1 cut(s) 275
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 67, 215
LpnPI CCDG 9 cut(s) 30, 53, 78, 110, 124, 141, 147, 198, 289
Lsp1109I GCAGC 3 cut(s) 240, 247, 269
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 62, 201, 218
MfeI CAATTG 1 cut(s) 297
MluCI AATT 2 cut(s) 297, 358
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 2 cut(s) 127, 175
MnlI CCTC 5 cut(s) 84, 113, 139, 295, 339
MroI TCCGGA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 177
MspI CCGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 26, 327
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 125
NspV TTCGAA 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 266, 272
PkrI GCNGC 3 cut(s) 237, 255, 284
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspFI CCCAGC 2 cut(s) 155, 161
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 19, 78
SatI GCNGC 3 cut(s) 236, 254, 283
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 19, 78
SchI GAGTC 1 cut(s) 217
SetI ASST 8 cut(s) 87, 99, 116, 124, 211, 240, 284, 350
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 2 cut(s) 19, 78
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 297, 358
SsiI CCGC 1 cut(s) 135
TaaI ACNGT 2 cut(s) 10, 131
TaqI TCGA 2 cut(s) 171, 181
TasI AATT 2 cut(s) 297, 358
TfiI GAWTC 2 cut(s) 266, 272
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 3 cut(s) 235, 253, 282
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 19, 78
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.