Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019985

Physical Location & Seq

Genomic Coordinates Forward (+)

46050881 .. 46053065

Gene Structure 2185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG287400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGGAAGCCGTCACGAGGATGGAGCTTCCGCGGAGAACAACTCCGACTCCGAGGTCATGGCGAGAGTGGAGAAGAAGGCTTTCAGCGGTCCTCTAGGCTCGAGCTCCTCCTCCAGGGCTTGGAGGAGGATCAAGAGCTTGGATAGGAAGAGGACTAGTAGTACTAGCACCGAAAACGATGACGACGAGGCCTACGTGGAGATAACTCTCGACATCCTCGACGACTCGGTGGCCGTGCACAGTGTTCAGGCCGCCGGAGGCGGTGGCCACGAGGACCCGGAGCTTGCCTTGCTGGCCAAGAAGACTCTGGAAGGCAAGAAGTCGGCGTCGTTCCGGTCGTCTCTCCTCCGCAACACTTCGACGCACATACGGCAGGTCTCGCAAGAGCTGAAGCGTCTGGCTTCATTCTCGAAGCGAAACTCCGGCGCCGGCCGACGTTTCGACCGGACCAGGTCCGCCACTGCACAAGCCTTGAAGAGCCTCAAGTTCATCACCGCCAAGGCCTCCTCCACCAACGGCTGGGCCACCGTCGAGAAACGTTTCGACGACCTTACCGCCACCTCCAATGGCCTCCTCAACTCTTCTCTCTTCGGTGAATGCATAGGAATGAACAAGGAGTCTAAGGAGTTCGCCGGCGAGCTTTTCCGGGCACTTGCTCGGAGACGCAACATTAGTGGTGATTCCATCAACAAGGCACAGCTTAGAGAATTCTGGGAGCAGATTTCTGACGAGAGCTTCGACTCTAGGCTCCAGACTTTCTTTGACATGGTGGATAAAGACGCCGATGGAAGAATCACAGAAGAAGAAGTCAGAGAGATTATTAGTCTCAGTGCTTCTGCGAACAAACTCTCCAACATTCAGAAACAAGCTCAGGAATATGCAGCGCTCATTATGGAAGAGCTTGACCCAGACAATGTTGGCTACATTATGGTTGAAAACTTGGAAACTTTGTTGCTGCAAGCTCCGGTGCACAAATCGGTCACGGTAAGCGACAGCCGAGTTCTGAGTCAGCTACTGAGTCAGAAGCTGAAGCCAACACAAGAAAACAACCCAATTACAAGATGGTACCAGAAGACCAAGTACTTCTTGTTAGATAATTGGCAAAGAGTTTGGGTTATGATGCTATGGATTGGGATAGTCTCAGCTTTGTTTGTGTACAAGTTTATTCAGTACAAGAATAAGGAAGCATTTGAAGTGATGGGCTATTGTGTTTGCATAGCCAAAGGAGGAGCAGAGACTTTGAAATTCAACATGGCACTGATTTTGTTACCGGTTTGTCGAAACACAATTACTTGGCTCAGAAACAAGACCAAATTGGGGGTGGTAGTCCCGTTCGATGATAATCTGAACTTTCATAAGGTCATTGCAGTTGGAATAGTCATCGGTGTTGGATTACACGCCGGAGCACATTTGACGTGTGATTTTCCGAGGCTGATTCACGCAACGGAAGAACAGTACGAGCCGATGATACCATACTTTGGTAAAGACCAGCCTGAGAATTACTGGTGGTTTGTGAAGGGAGTGGAAGGGTTGACTGGGATTGGGATTGTGGTGTTGATGACTATAGCATTCACTTTGGCCACTCCTTGGTTTAGAAGAAACAAGTTGAACTTGCCAAAGCCGCTGAAGAAACTCACAGGTTTCAACGCCTTTTGGTATTCACACCACCTATTTGTGATTGTCTACACTCTCCTCATAATCCATAGCATCAAACTCTACCTCGCTAAGAAATGGTACTACAAAACGGTAAGTTCCTCTCCTTCATTTGATCATCAATTCATGTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009987 GO:0010941 GO:0012505 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0023052 GO:0033500 GO:0033554 GO:0042592 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071944 GO:0072593 GO:0098542 GO:0104004

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

596

Amino Acids

67.4

Weight (kDa)

9.07

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NADPH_Ox	PF08414	146 - 248	1.7e-37	Respiratory burst NADPH oxidase
EF-hand_7	PF13499	248 - 314	2.1e-06	EF-hand domain pair
Ferric_reduct	PF01794	418 - 565	3.2e-12	Ferric reductase like transmembrane component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019985)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001544 RLG00000034917
rosa_multiflora	Rmu_sc0002816.1_g000001 Rmu_sc0020631.1_g000002
rosa_samantha	Rh4AG276300 Rh4BG287400 Rh4CG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	364
Acc65I	GGTACC	1 cut(s)	1065
AccB1I	GGYRCC	2 cut(s)	425, 1065
AccB7I	CCANNNNNTGG	4 cut(s)	120, 519, 1478, 1587
AccI	GTMKAC	1 cut(s)	1683
AccII	CGCG	1 cut(s)	32
AclI	AACGTT	1 cut(s)	538
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	5 cut(s)	231, 265, 294, 430, 1578
AcsI	RAATTY	2 cut(s)	707, 1244
AcuI	CTGAAG	3 cut(s)	410, 1049, 1646
AcyI	GRCGYC	3 cut(s)	326, 426, 780
AfaI	GTAC	7 cut(s)	163, 1067, 1082, 1157, 1172, 1457, 1736
AfeI	AGCGCT	1 cut(s)	885
AfiI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
AflIII	ACRYGT	1 cut(s)	1415
AgeI	ACCGGT	1 cut(s)	1270
AgsI	TTSAA	7 cut(s)	475, 935, 1193, 1243, 1249, 1609, 1645
AhlI	ACTAGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	1416
AjnI	CCWGG	2 cut(s)	113, 449
AloI	GAACNNNNNNTCC	2 cut(s)	833, 865
Alw21I	GWGCWC	4 cut(s)	107, 240, 972, 1408
Alw26I	GTCTC	6 cut(s)	345, 382, 655, 830, 1144, 1229
Alw44I	GTGCAC	2 cut(s)	236, 968
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	2 cut(s)	1015, 1027
Ama87I	CYCGRG	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	885
ApaLI	GTGCAC	2 cut(s)	236, 968
ApeKI	GCWGC	2 cut(s)	881, 955
ApoI	RAATTY	2 cut(s)	707, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AsiGI	ACCGGT	1 cut(s)	1270
Asp700I	GAANNNNTTC	2 cut(s)	80, 539
Asp718I	GGTACC	1 cut(s)	1065
AspLEI	GCGC	2 cut(s)	428, 886
AspS9I	GGNCC	5 cut(s)	89, 274, 447, 453, 522
AsuC2I	CCSGG	2 cut(s)	278, 647
AsuHPI	GGTGA	3 cut(s)	484, 605, 689
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	4 cut(s)	89, 274, 447, 453
BaeGI	GKGCMC	3 cut(s)	240, 652, 972
BalI	TGGCCA	3 cut(s)	267, 296, 1580
BanI	GGYRCC	2 cut(s)	425, 1065
BanII	GRGCYC	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	1064, 1096
BauI	CACGAG	2 cut(s)	14, 269
BbsI	GAAGAC	2 cut(s)	308, 1079
Bbv12I	GWGCWC	4 cut(s)	107, 240, 972, 1408
BbvI	GCAGC	2 cut(s)	893, 942
BccI	CCATC	5 cut(s)	14, 692, 779, 1056, 1192
BceAI	ACGGC	3 cut(s)	218, 386, 532
BciT130I	CCWGG	2 cut(s)	115, 451
BclI	TGATCA	1 cut(s)	1768
BcnI	CCSGG	2 cut(s)	278, 647
BcoDI	GTCTC	6 cut(s)	345, 382, 655, 830, 1144, 1229
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	4 cut(s)	95, 156, 165, 744
BfmI	CTRYAG	1 cut(s)	1563
BfoI	RGCGCY	2 cut(s)	429, 887
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	4 cut(s)	252, 882, 956, 1622
BlsI	GCNGC	4 cut(s)	253, 883, 957, 1623
BmcAI	AGTACT	2 cut(s)	163, 1082
Bme1390I	CCNGG	4 cut(s)	115, 278, 451, 647
Bme18I	GGWCC	4 cut(s)	89, 274, 447, 453
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	1416
BmgT120I	GGNCC	5 cut(s)	89, 274, 447, 453, 522
BmiI	GGNNCC	4 cut(s)	276, 427, 749, 1067
BmrFI	CCNGG	4 cut(s)	115, 278, 451, 647
BmrI	ACTGGG	1 cut(s)	1545
BmsI	GCATC	2 cut(s)	1110, 1716
BmuI	ACTGGG	1 cut(s)	1545
BpiI	GAAGAC	2 cut(s)	308, 1079
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	2 cut(s)	97, 734
Bpu10I	CCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	278, 647
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	1341
BsaHI	GRCGYC	3 cut(s)	326, 426, 780
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	6 cut(s)	30, 51, 114, 498, 1427, 1586
BsaWI	WCCGGW	4 cut(s)	333, 444, 964, 1270
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 833, 863
Bsc4I	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
Bse118I	RCCGGY	3 cut(s)	428, 632, 1270
Bse1I	ACTGG	2 cut(s)	1508, 1540
Bse3DI	GCAATG	1 cut(s)	1362
Bse8I	GATNNNNATC	1 cut(s)	1341
BseBI	CCWGG	2 cut(s)	115, 451
BseDI	CCNNGG	6 cut(s)	30, 51, 114, 498, 1427, 1586
BseGI	GGATG	2 cut(s)	25, 213
BseJI	GATNNNNATC	1 cut(s)	1341
BseLI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
BseMI	GCAATG	1 cut(s)	1362
BseMII	CTCAG	7 cut(s)	841, 884, 995, 1007, 1155, 1312, 1485
BseNI	ACTGG	2 cut(s)	1508, 1540
BseRI	GAGGAG	8 cut(s)	97, 100, 139, 335, 496, 563, 1242, 1682
BseSI	GKGCMC	3 cut(s)	240, 652, 972
BseX3I	CGGCCG	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	893, 942
BseYI	CCCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	3 cut(s)	338, 433, 445
BshNI	GGYRCC	2 cut(s)	425, 1065
BshTI	ACCGGT	1 cut(s)	1270
BsiEI	CGRYCG	3 cut(s)	338, 433, 445
BsiHKAI	GWGCWC	4 cut(s)	107, 240, 972, 1408
BsiHKCI	CYCGRG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	1313
BslI	CCNNNNNNNGG	7 cut(s)	16, 114, 120, 519, 1317, 1478, 1587
BsmAI	GTCTC	6 cut(s)	345, 382, 655, 830, 1144, 1229
BsmBI	CGTCTC	2 cut(s)	345, 655
BsmFI	GGGAC	1 cut(s)	1313
BsmI	GAATGC	2 cut(s)	602, 1568
Bso31I	GGTCTC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	5 cut(s)	107, 240, 652, 972, 1408
Bsp1407I	TGTACA	1 cut(s)	1155
Bsp143I	GATC	2 cut(s)	129, 1768
BspCNI	CTCAG	7 cut(s)	840, 883, 996, 1008, 1154, 1311, 1486
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	276, 427, 749, 1067
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	2 cut(s)	470, 891
BspT107I	GGYRCC	2 cut(s)	425, 1065
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	1362
BsrFI	RCCGGY	3 cut(s)	428, 632, 1270
BsrGI	TGTACA	1 cut(s)	1155
BsrI	ACTGG	2 cut(s)	1508, 1540
BssAI	RCCGGY	3 cut(s)	428, 632, 1270
BssECI	CCNNGG	6 cut(s)	30, 51, 114, 498, 1427, 1586
BssMI	GATC	2 cut(s)	129, 1768
BssNI	GRCGYC	3 cut(s)	326, 426, 780
BssSI	CACGAG	2 cut(s)	14, 269
BssT1I	CCWWGG	2 cut(s)	498, 1586
Bst2BI	CACGAG	2 cut(s)	14, 269
Bst2UI	CCWGG	2 cut(s)	115, 451
Bst4CI	ACNGT	5 cut(s)	242, 529, 985, 1455, 1747
Bst6I	CTCTTC	5 cut(s)	143, 470, 586, 593, 891
BstACI	GRCGYC	3 cut(s)	326, 426, 780
BstAUI	TGTACA	1 cut(s)	1155
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	6 cut(s)	285, 294, 430, 634, 638, 960
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	25, 213
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	2 cut(s)	429, 887
BstHHI	GCGC	2 cut(s)	428, 886
BstKTI	GATC	2 cut(s)	132, 1771
BstMAI	GTCTC	6 cut(s)	345, 382, 655, 830, 1144, 1229
BstMBI	GATC	2 cut(s)	129, 1768
BstMCI	CGRYCG	3 cut(s)	338, 433, 445
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 293, 370, 379, 1621
BstNI	CCWGG	2 cut(s)	115, 451
BstSCI	CCNGG	4 cut(s)	113, 276, 449, 645
BstSFI	CTRYAG	1 cut(s)	1563
BstSLI	GKGCMC	3 cut(s)	240, 652, 972
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	893, 942
BstV2I	GAAGAC	2 cut(s)	308, 1079
BstZI	CGGCCG	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	1416
BtsCI	GGATG	2 cut(s)	25, 213
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	4 cut(s)	247, 459, 835, 1256
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	6 cut(s)	285, 294, 430, 634, 638, 960
CaiI	CAGNNNCTG	2 cut(s)	1015, 1027
CfoI	GCGC	2 cut(s)	428, 886
Cfr10I	RCCGGY	3 cut(s)	428, 632, 1270
Cfr13I	GGNCC	5 cut(s)	89, 274, 447, 453, 522
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	5 cut(s)	315, 370, 383, 672, 788
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	7 cut(s)	162, 1066, 1081, 1156, 1171, 1456, 1735
CspAI	ACCGGT	1 cut(s)	1270
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	4 cut(s)	58, 766, 1252, 1780
CviQI	GTAC	7 cut(s)	162, 1066, 1081, 1156, 1171, 1456, 1735
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	2 cut(s)	131, 1770
DpnII	GATC	2 cut(s)	129, 1768
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	5 cut(s)	231, 265, 294, 430, 1578
EagI	CGGCCG	1 cut(s)	430
Eam1104I	CTCTTC	5 cut(s)	143, 470, 586, 593, 891
EarI	CTCTTC	5 cut(s)	143, 470, 586, 593, 891
EciI	GGCGGA	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	498, 1586
Eco147I	AGGCCT	2 cut(s)	191, 503
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	4 cut(s)	89, 274, 447, 453
Eco47III	AGCGCT	1 cut(s)	885
Eco52I	CGGCCG	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	3 cut(s)	410, 1049, 1646
Eco88I	CYCGRG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	113, 449
EcoT14I	CCWWGG	2 cut(s)	498, 1586
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	498, 1586
Esp3I	CGTCTC	2 cut(s)	345, 655
FaeI	CATG	4 cut(s)	61, 769, 1255, 1783
FalI	AAGNNNNNCTT	4 cut(s)	1070, 1102, 1595, 1627
FaqI	GGGAC	1 cut(s)	1313
FatI	CATG	4 cut(s)	57, 765, 1251, 1779
FbaI	TGATCA	1 cut(s)	1768
FblI	GTMKAC	1 cut(s)	1683
Fnu4HI	GCNGC	4 cut(s)	252, 882, 956, 1622
FokI	GGATG	2 cut(s)	32, 200
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	4 cut(s)	252, 882, 956, 1622
FspBI	CTAG	4 cut(s)	95, 156, 165, 744
GlaI	GCGC	2 cut(s)	427, 885
GluI	GCNGC	4 cut(s)	252, 882, 956, 1622
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	2 cut(s)	97, 734
HaeII	RGCGCY	2 cut(s)	429, 887
HgaI	GACGC	5 cut(s)	315, 370, 383, 672, 788
HhaI	GCGC	2 cut(s)	428, 886
Hin1I	GRCGYC	3 cut(s)	326, 426, 780
Hin1II	CATG	4 cut(s)	61, 769, 1255, 1783
Hin6I	GCGC	2 cut(s)	426, 884
HinP1I	GCGC	2 cut(s)	426, 884
HincII	GTYRAC	1 cut(s)	1533
HindII	GTYRAC	1 cut(s)	1533
HphI	GGTGA	3 cut(s)	484, 605, 689
Hpy166II	GTNNAC	5 cut(s)	238, 970, 1156, 1533, 1684
Hpy188III	TCNNGA	8 cut(s)	14, 133, 209, 308, 409, 532, 751, 872
Hpy8I	GTNNAC	5 cut(s)	238, 970, 1156, 1533, 1684
Hpy99I	CGWCG	7 cut(s)	188, 224, 331, 364, 438, 533, 548
HpyAV	CCTTC	5 cut(s)	70, 305, 1510, 1520, 1770
HpyCH4III	ACNGT	5 cut(s)	242, 529, 985, 1455, 1747
HpyCH4IV	ACGT	4 cut(s)	195, 436, 538, 1415
HpyCH4V	TGCA	8 cut(s)	238, 464, 600, 881, 958, 970, 1215, 1367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 293, 370, 379, 1621
HpySE526I	ACGT	4 cut(s)	195, 436, 538, 1415
Hsp92I	GRCGYC	3 cut(s)	326, 426, 780
Hsp92II	CATG	4 cut(s)	61, 769, 1255, 1783
HspAI	GCGC	2 cut(s)	426, 884
KasI	GGCGCC	1 cut(s)	425
KpnI	GGTACC	1 cut(s)	1069
KroI	GCCGGC	2 cut(s)	428, 632
KroNI	GCCGGC	2 cut(s)	430, 634
Ksp22I	TGATCA	1 cut(s)	1768
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	129, 1768
LguI	GCTCTTC	2 cut(s)	470, 891
LmnI	GCTCC	8 cut(s)	23, 110, 280, 715, 753, 967, 1229, 1403
Lsp1109I	GCAGC	2 cut(s)	893, 942
LweI	GCATC	2 cut(s)	1110, 1716
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	4 cut(s)	95, 156, 165, 744
MaeII	ACGT	4 cut(s)	195, 436, 538, 1415
MaeIII	GTNAC	3 cut(s)	11, 979, 1266
MalI	GATC	2 cut(s)	131, 1770
MboI	GATC	2 cut(s)	129, 1768
MhlI	GDGCHC	5 cut(s)	107, 240, 652, 972, 1408
MlsI	TGGCCA	3 cut(s)	267, 296, 1580
MluCI	AATT	8 cut(s)	707, 1053, 1096, 1244, 1287, 1313, 1498, 1775
MluNI	TGGCCA	3 cut(s)	267, 296, 1580
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	7 cut(s)	41, 218, 298, 626, 734, 1015, 1027
MmeI	TCCRAC	4 cut(s)	69, 876, 1351, 1369
Mox20I	TGGCCA	3 cut(s)	267, 296, 1580
Mph1103I	ATGCAT	1 cut(s)	602
MreI	CGCCGGCG	1 cut(s)	632
MroNI	GCCGGC	2 cut(s)	428, 632
MroXI	GAANNNNTTC	2 cut(s)	80, 539
MscI	TGGCCA	3 cut(s)	267, 296, 1580
MslI	CAYNNNNRTG	2 cut(s)	18, 605
Msp20I	TGGCCA	3 cut(s)	267, 296, 1580
MspA1I	CMGCKG	3 cut(s)	32, 87, 1624
MspR9I	CCNGG	4 cut(s)	115, 278, 451, 647
Mva1269I	GAATGC	2 cut(s)	602, 1568
MvaI	CCWGG	2 cut(s)	115, 451
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	289, 293, 370, 379, 1621
NaeI	GCCGGC	2 cut(s)	430, 634
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	2 cut(s)	278, 647
NdeII	GATC	2 cut(s)	129, 1768
NgoMIV	GCCGGC	2 cut(s)	428, 632
NlaIII	CATG	4 cut(s)	61, 769, 1255, 1783
NlaIV	GGNNCC	4 cut(s)	276, 427, 749, 1067
NmeAIII	GCCGAG	1 cut(s)	1022
NmuCI	GTSAC	2 cut(s)	11, 979
NsiI	ATGCAT	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	100
PceI	AGGCCT	2 cut(s)	191, 503
PciSI	GCTCTTC	2 cut(s)	470, 891
PcsI	WCGNNNNNNNCGW	5 cut(s)	183, 192, 216, 335, 735
PctI	GAATGC	2 cut(s)	602, 1568
PdiI	GCCGGC	2 cut(s)	430, 634
PdmI	GAANNNNTTC	2 cut(s)	80, 539
PfeI	GAWTC	3 cut(s)	680, 792, 1435
PflFI	GACNNNGTC	1 cut(s)	451
PflMI	CCANNNNNTGG	4 cut(s)	120, 519, 1478, 1587
PinAI	ACCGGT	1 cut(s)	1270
PkrI	GCNGC	4 cut(s)	253, 883, 957, 1623
PleI	GAGTC	7 cut(s)	41, 218, 298, 625, 734, 1014, 1026
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	7 cut(s)	41, 218, 298, 625, 734, 1014, 1026
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	113, 449
PspFI	CCCAGC	1 cut(s)	519
PspGI	CCWGG	2 cut(s)	113, 449
PspN4I	GGNNCC	4 cut(s)	276, 427, 749, 1067
PspPI	GGNCC	5 cut(s)	89, 274, 447, 453, 522
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	100
PstNI	CAGNNNCTG	2 cut(s)	1015, 1027
PsyI	GACNNNGTC	1 cut(s)	451
RsaI	GTAC	7 cut(s)	163, 1067, 1082, 1157, 1172, 1457, 1736
RsaNI	GTAC	7 cut(s)	162, 1066, 1081, 1156, 1171, 1456, 1735
RseI	CAYNNNNRTG	2 cut(s)	18, 605
SacI	GAGCTC	1 cut(s)	107
SacII	CCGCGG	1 cut(s)	33
SapI	GCTCTTC	2 cut(s)	470, 891
SatI	GCNGC	4 cut(s)	252, 882, 956, 1622
Sau3AI	GATC	2 cut(s)	129, 1768
Sau96I	GGNCC	5 cut(s)	89, 274, 447, 453, 522
ScaI	AGTACT	2 cut(s)	163, 1082
SchI	GAGTC	7 cut(s)	41, 218, 298, 626, 734, 1015, 1027
ScrFI	CCNGG	4 cut(s)	115, 278, 451, 647
SduI	GDGCHC	5 cut(s)	107, 240, 652, 972, 1408
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	1110, 1716
SfcI	CTRYAG	1 cut(s)	1563
SfoI	GGCGCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	100
Sfr303I	CCGCGG	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	632
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	4 cut(s)	89, 274, 447, 453
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	18, 605
SmlI	CTYRAG	2 cut(s)	100, 482
SmoI	CTYRAG	2 cut(s)	100, 482
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	8 cut(s)	707, 1053, 1096, 1244, 1287, 1313, 1498, 1775
SseBI	AGGCCT	2 cut(s)	191, 503
SspDI	GGCGCC	1 cut(s)	425
SspMI	CTAG	4 cut(s)	95, 156, 165, 744
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	2 cut(s)	191, 503
StyD4I	CCNGG	4 cut(s)	113, 276, 449, 645
StyI	CCWWGG	2 cut(s)	498, 1586
TaaI	ACNGT	5 cut(s)	242, 529, 985, 1455, 1747
TaiI	ACGT	4 cut(s)	198, 439, 541, 1418
TaqII	GACCGA	1 cut(s)	967
TasI	AATT	8 cut(s)	707, 1053, 1096, 1244, 1287, 1313, 1498, 1775
TatI	WGTACW	4 cut(s)	161, 1080, 1155, 1170
TauI	GCSGC	2 cut(s)	254, 1624
TfiI	GAWTC	3 cut(s)	680, 792, 1435
TscAI	CASTG	4 cut(s)	247, 466, 835, 1263
TseFI	GTSAC	2 cut(s)	11, 979
TseI	GCWGC	2 cut(s)	881, 955
Tsp45I	GTSAC	2 cut(s)	11, 979
TspDTI	ATGAA	6 cut(s)	393, 478, 623, 1343, 1752, 1768
TspGWI	ACGGA	1 cut(s)	1460
TspRI	CASTG	4 cut(s)	247, 466, 835, 1263
Tth111I	GACNNNGTC	1 cut(s)	451
Van91I	CCANNNNNTGG	4 cut(s)	120, 519, 1478, 1587
VneI	GTGCAC	2 cut(s)	236, 968
VpaK11BI	GGWCC	4 cut(s)	89, 274, 447, 453
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	707, 1244
XcmI	CCANNNNNNNNNTGG	3 cut(s)	304, 1059, 1318
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	1683
XmnI	GAANNNNTTC	2 cut(s)	80, 539
XspI	CTAG	4 cut(s)	95, 156, 165, 744
ZrmI	AGTACT	2 cut(s)	163, 1082
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.