RLG00000002144

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020580
Physical Location & Seq
Reverse (-)
26208318 .. 26209002
685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002144

Sequence Viewer

Length: 612 bp
ATGAAGACTAACATAACCTATGATGCTGGTGGTGGTGCTATTACTTTGGATGATGGTTGCATGATTACAATGGCAAATAAAGGTGTGGACAGATACTATTCAAAAATTCAAGAGGCCTTTGCAGCCATTGATATCTCAAGCCATAAATTTGAAGGGAAGATTGGTGAACTGATGGGGAATCTAAAAGGGCTGAGCTTGCTCAATGTTTCCAATAACATTTTCACCAGGGAGATCCCATCTTCTTTGGGAAACTTAACACTGCTGGAGGTATTGGACCTTTCACAGAACAAGCTCTCAGGAAAGATCCCTCAACAGCTGGCGCAGCTGACATTCCTTTCACAATTCAATGCTTCTCACAATAGTCTCATAGGGTCTCACAGAGATCCGTTGCCAAACAAATGTGGAAATCCCAAGGCCAATCAATTGCCTTCTCCAACTGTACAAGATACTTATTCTTCTGAGTCCAGAATTGAATGGATATTTGTTGTCGCAGGATTTGGAAGTGGTTTGGTGCAGGGAATAATTCTTGCGGATCTTATGATCAGAATGAGGTATGCCTTGTTTCTTAAAATTGTTGACATGCTAATCAGAGCAGTGAAAAGGAGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

204

Amino Acids

22.31

Weight (kDa)

9.1

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020580)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251181
rosa_laevigata RLG00000002144 RLG00000015476
rosa_multiflora Rmu_sc0004077.1_g000011 Rmu_sc0025980.1_g000001
rosa_samantha Rh1BG172500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 530
AclWI GGATC 4 cut(s) 226, 298, 377, 540
AcsI RAATTY 2 cut(s) 105, 146
AfaI GTAC 1 cut(s) 441
AgsI TTSAA 5 cut(s) 102, 110, 152, 346, 473
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 4 cut(s) 144, 176, 203, 235
AluBI AGCT 4 cut(s) 195, 292, 316, 325
AluI AGCT 4 cut(s) 195, 292, 316, 325
Alw26I GTCTC 3 cut(s) 368, 378, 598
AlwI GGATC 4 cut(s) 226, 298, 377, 540
AoxI GGCC 2 cut(s) 114, 414
ApeKI GCWGC 2 cut(s) 122, 322
ApoI RAATTY 2 cut(s) 105, 146
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 176, 214
AvaII GGWCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 134, 334
BccI CCATC 3 cut(s) 47, 166, 244
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 368, 378, 598
BisI GCNGC 2 cut(s) 123, 323
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 2 cut(s) 124, 324
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 225, 411
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 225, 411
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 182, 309, 450
BseXI GCAGC 2 cut(s) 134, 334
BsgI GTGCAG 1 cut(s) 533
BshFI GGCC 2 cut(s) 116, 416
BsmAI GTCTC 3 cut(s) 368, 378, 598
BsnI GGCC 2 cut(s) 116, 416
Bso31I GGTCTC 1 cut(s) 378
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 231, 303, 382, 532, 540
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 1 cut(s) 530
BspANI GGCC 2 cut(s) 116, 416
BspCNI CTCAG 3 cut(s) 183, 308, 451
BspPI GGATC 4 cut(s) 226, 298, 377, 540
BspTNI GGTCTC 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 225, 411
BssMI GATC 5 cut(s) 231, 303, 382, 532, 540
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 439, 609
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 197, 318
BstDEI CTNAG 3 cut(s) 191, 295, 459
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 234, 306, 385, 535, 543
BstMAI GTCTC 3 cut(s) 368, 378, 598
BstMBI GATC 5 cut(s) 231, 303, 382, 532, 540
BstMWI GCNNNNNNNGC 3 cut(s) 122, 196, 322
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 134, 334
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 4 cut(s) 231, 303, 382, 532
BstYI RGATCY 4 cut(s) 231, 303, 382, 532
BsuRI GGCC 2 cut(s) 116, 416
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 2 cut(s) 257, 600
BtsIMutI CAGTG 2 cut(s) 257, 600
Cac8I GCNNGC 2 cut(s) 197, 318
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 440
CviAII CATG 2 cut(s) 61, 580
CviJI RGCY 9 cut(s) 116, 125, 141, 190, 195, 292, 316, 325, 416
CviKI_1 RGCY 9 cut(s) 116, 125, 141, 190, 195, 292, 316, 325, 416
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 3 cut(s) 191, 295, 459
DpnI GATC 5 cut(s) 233, 305, 384, 534, 542
DpnII GATC 5 cut(s) 231, 303, 382, 532, 540
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 64, 583
FaiI YATR 8 cut(s) 14, 21, 62, 144, 368, 539, 555, 581
FatI CATG 2 cut(s) 60, 579
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 123, 323
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 123, 323
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 123, 323
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 116, 416
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 64, 583
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 178, 461
HphI GGTGA 2 cut(s) 176, 214
Hpy166II GTNNAC 3 cut(s) 88, 167, 577
Hpy188I TCNGA 3 cut(s) 460, 545, 590
Hpy188III TCNNGA 3 cut(s) 110, 297, 465
Hpy8I GTNNAC 3 cut(s) 88, 167, 577
HpyAV CCTTC 2 cut(s) 146, 438
HpyCH4III ACNGT 2 cut(s) 439, 609
HpyCH4V TGCA 3 cut(s) 60, 122, 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 196, 322
HpyF3I CTNAG 3 cut(s) 191, 295, 459
Hsp92II CATG 2 cut(s) 64, 583
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 231, 303, 382, 532, 540
LpnPI CCDG 9 cut(s) 12, 211, 238, 248, 282, 302, 477, 478, 500
Lsp1109I GCAGC 2 cut(s) 134, 334
LweI GCATC 1 cut(s) 13
MalI GATC 5 cut(s) 233, 305, 384, 534, 542
MboI GATC 5 cut(s) 231, 303, 382, 532, 540
MboII GAAGA 4 cut(s) 16, 169, 231, 447
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 4 cut(s) 231, 303, 382, 532
MluCI AATT 7 cut(s) 105, 146, 341, 422, 468, 522, 570
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 4 cut(s) 106, 259, 318, 543
MseI TTAA 2 cut(s) 254, 567
MspA1I CMGCKG 2 cut(s) 316, 325
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 122, 196, 322
NdeII GATC 5 cut(s) 231, 303, 382, 532, 540
NlaIII CATG 2 cut(s) 64, 583
NspI RCATGY 1 cut(s) 583
PceI AGGCCT 1 cut(s) 116
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 124, 324
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 4 cut(s) 231, 303, 382, 532
PvuII CAGCTG 2 cut(s) 316, 325
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SaqAI TTAA 2 cut(s) 254, 567
SatI GCNGC 2 cut(s) 123, 323
Sau3AI GATC 5 cut(s) 231, 303, 382, 532, 540
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 226
SetI ASST 9 cut(s) 20, 85, 197, 270, 279, 294, 318, 327, 554
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 7 cut(s) 105, 146, 341, 422, 468, 522, 570
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 1 cut(s) 530
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 439, 609
TasI AATT 7 cut(s) 105, 146, 341, 422, 468, 522, 570
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 254, 567
Tru9I TTAA 2 cut(s) 254, 567
TscAI CASTG 2 cut(s) 264, 600
TseI GCWGC 2 cut(s) 122, 322
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 264, 600
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 105, 146
XceI RCATGY 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.