Rmu_sc0004077.1_g000011

Receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004077.1
Physical Location & Seq
Reverse (-)
29821 .. 30144
324 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004077.1_g000011.1.cds

Sequence Viewer

Length: 324 bp
atgaaaggaatcgctccagatgagtcctggtatatagaggcaaacacaggttcaagtcaacctatgggtgatcaacagttttactaccattacaccttctcaatcatgataacaaataaaggtgttgaaagatactacgagaagattcaacaagacatgggggtcattaatttatcatgcaacaaatttgaagggaagattcctgtattcattgggaacttgaaaggacttcgctttcttaatgtttccaacaacattcttagtggcagcgtcccatcattcttgggaaatttgacattacttgaagcattggaactttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.04

Weight (kDa)

5.24

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020580)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251181
rosa_laevigata RLG00000002144 RLG00000015476
rosa_multiflora Rmu_sc0004077.1_g000011 Rmu_sc0025980.1_g000001
rosa_samantha Rh1BG172500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 185, 289
AgsI TTSAA 6 cut(s) 54, 128, 149, 191, 223, 305
AjnI CCWGG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 2 cut(s) 185, 289
AseI ATTAAT 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 70
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 70
BspHI TCATGA 1 cut(s) 105
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 260
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 105
CseI GACGC 1 cut(s) 259
CviAII CATG 3 cut(s) 106, 157, 177
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 109, 160, 180
FaiI YATR 7 cut(s) 33, 35, 65, 107, 158, 178, 322
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 105, 156, 176
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 268
HgaI GACGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 109, 160, 180
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 4 cut(s) 9, 23, 145, 199
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 17, 106
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 106, 185
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 3 cut(s) 109, 160, 180
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 13, 30, 33, 40, 216
Lsp1109I GCAGC 1 cut(s) 279
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 154, 208
MluCI AATT 3 cut(s) 169, 185, 289
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 1 cut(s) 31
MseI TTAA 2 cut(s) 168, 240
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 109, 160, 180
PagI TCATGA 1 cut(s) 105
PfeI GAWTC 3 cut(s) 9, 145, 199
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 168, 240
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 28
SetI ASST 4 cut(s) 52, 64, 98, 124
Sse9I AATT 3 cut(s) 169, 185, 289
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 78
TasI AATT 3 cut(s) 169, 185, 289
TfiI GAWTC 3 cut(s) 9, 145, 199
Tru1I TTAA 2 cut(s) 168, 240
Tru9I TTAA 2 cut(s) 168, 240
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 17, 199, 309
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 2 cut(s) 185, 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.