Rh1BG172500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0020580
Physical Location & Seq
Reverse (-)
27557775 .. 27559003
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG172500.1

Sequence Viewer

Length: 312 bp
ATGGGAAAATACCCAGATCACTTGCGAATTTTGGTGAGTCTCCCAGAATTGAAACTGCTGGCGATGCACCACAATGAGTTCTATGGTGTGATTGAGAATACCAAAGCAAATCTTCACTTTCCCGAGCTGCGCATTCTCGACCTGTCTTACAATAATTTCAGTGTCATGATAACAAATAAAGGTGTGGAGAGATACTACTCGAGGATTCAAGAAGACCTTGGGGTTTTGTTGGTTATGCACGTTGTTCCTGTATTGTGGCTTGAGGGCACCATTGTTCGCTTTAAAGCGAGCACACAACAGGGTTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

6.97

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020580)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251181
rosa_laevigata RLG00000002144 RLG00000015476
rosa_multiflora Rmu_sc0004077.1_g000011 Rmu_sc0025980.1_g000001
rosa_samantha Rh1BG172500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 27
AgsI TTSAA 2 cut(s) 52, 209
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 44
Ama87I CYCGRG 2 cut(s) 122, 199
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 2 cut(s) 122, 199
BaeGI GKGCMC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BmeT110I CYCGRG 2 cut(s) 122, 199
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 293
BsiHKCI CYCGRG 2 cut(s) 122, 199
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 132
BsoBI CYCGRG 2 cut(s) 122, 199
Bsp1286I GDGCHC 2 cut(s) 269, 293
Bsp143I GATC 1 cut(s) 16
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 60, 289
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 60, 289
CciI TCATGA 1 cut(s) 165
CfoI GCGC 1 cut(s) 132
CviAII CATG 1 cut(s) 166
CviJI RGCY 2 cut(s) 127, 259
CviKI_1 RGCY 2 cut(s) 127, 259
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 122, 199
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 84, 167, 236
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 201, 233
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspI TGCGCA 1 cut(s) 131
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 2 cut(s) 37, 205
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 4 cut(s) 122, 137, 166, 209
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 67, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 27, 44, 57, 155, 261, 284
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 104, 224
MhlI GDGCHC 2 cut(s) 269, 293
MluCI AATT 3 cut(s) 27, 47, 154
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 2 cut(s) 195, 256
MseI TTAA 2 cut(s) 282, 310
MslI CAYNNNNRTG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 199
PagI TCATGA 1 cut(s) 165
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 282, 310
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 2 cut(s) 269, 293
SetI ASST 5 cut(s) 129, 144, 184, 219, 243
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 199, 260
SmoI CTYRAG 2 cut(s) 199, 260
Sse9I AATT 3 cut(s) 27, 47, 154
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 138, 200
TasI AATT 3 cut(s) 27, 47, 154
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 282, 310
Tru9I TTAA 2 cut(s) 282, 310
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 127
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.