RLG00000015476

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0020580
Physical Location & Seq
Reverse (-)
66596448 .. 66598816
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015476

Sequence Viewer

Length: 702 bp
ATGCACACTTCTGAAATGTTTTTGTTGAGACTAGTTTGTGGGATGGGGAAGGGTCAAGTACCGATTTGGATGTGCAATACAAGCACGCAGACTTGGAGGTTCTTGGACCTTTCAGGCTTTAGCCAACCAACTGGTTTTGCCCTTCCCTGGGAAGATGAGTCCCAGTATATGGAGGCAAACACAGGTTCAAGTCAACCTATGGGTGATCAACATTTTTATTACTGTTACACCTTCTCAATCATGATAACAAATAAAGGTGTTGAAAGGTACTACGAGAAGATTCAACTAGACATGGGGGTCATTGATTTATCATGCAATAAATTTGAAGGGAAGATTCCTGAATTGATTGGGAACTTGAAAGGACTTCGCTTTCTTAATGTTTCCAACAACATTCTTAGTGGCAGCATCCCATCATTCTTGGGAAATTTGACATTACTTGAAGCATTGGACCTTTCACAGAATGACCCCTCTAGAGAGATTTCTCATACTTTCGAGAGGACTTCATTTAAGGGAAACTCGGGATGGTGTGGAGAACCATTGCCAAAGAAATGTGGAAATGCTAAGATCCCAACACCACTGTCACCCTCGAGCTTAAGTGGAATTGAATTCGCGACTGGAAATTTGCATTGTCAGGTTTTAGAAGTTGGTTGTTGGTTGGAGTGGTACTTTCGGAGATGGCCATCACTTGGCGTTGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

234

Amino Acids

26.22

Weight (kDa)

5.83

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020580)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251181
rosa_laevigata RLG00000002144 RLG00000015476
rosa_multiflora Rmu_sc0004077.1_g000011 Rmu_sc0025980.1_g000001
rosa_samantha Rh1BG172500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB7I CCANNNNNTGG 2 cut(s) 169, 686
AccII CGCG 1 cut(s) 611
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 4 cut(s) 320, 424, 605, 619
AfaI GTAC 3 cut(s) 60, 269, 665
AfiI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 686
AflII CTTAAG 1 cut(s) 592
AgsI TTSAA 7 cut(s) 189, 263, 284, 326, 358, 440, 605
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 2 cut(s) 517, 586
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 4 cut(s) 320, 424, 605, 619
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
AspS9I GGNCC 2 cut(s) 106, 448
AsuHPI GGTGA 2 cut(s) 215, 573
AvaI CYCGRG 2 cut(s) 517, 586
AvaII GGWCC 2 cut(s) 106, 448
BalI TGGCCA 1 cut(s) 679
BbvI GCAGC 1 cut(s) 414
BccI CCATC 5 cut(s) 37, 418, 516, 669, 688
BciT130I CCWGG 1 cut(s) 148
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 3 cut(s) 32, 287, 471
BfrI CTTAAG 1 cut(s) 592
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 106, 448
BmeT110I CYCGRG 2 cut(s) 517, 586
BmgT120I GGNCC 2 cut(s) 106, 448
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 146, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 148, 169, 686
Bse1I ACTGG 3 cut(s) 136, 163, 619
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 679
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 146, 147
BseGI GGATG 4 cut(s) 48, 75, 405, 527
BseJI GATNNNNATC 1 cut(s) 679
BseLI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 686
BseMI GCAATG 1 cut(s) 536
BseNI ACTGG 3 cut(s) 136, 163, 619
BseXI GCAGC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 1 cut(s) 679
BsiHKCI CYCGRG 2 cut(s) 517, 586
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 4 cut(s) 147, 148, 169, 686
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 679
BsoBI CYCGRG 2 cut(s) 517, 586
Bsp143I GATC 2 cut(s) 205, 564
Bsp68I TCGCGA 1 cut(s) 611
BspANI GGCC 1 cut(s) 679
BspFNI CGCG 1 cut(s) 611
BspHI TCATGA 1 cut(s) 240
BspPI GGATC 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 3 cut(s) 136, 163, 619
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 2 cut(s) 205, 564
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 224, 579
BstAFI CTTAAG 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 395, 561
BstF5I GGATG 4 cut(s) 48, 75, 405, 527
BstFNI CGCG 1 cut(s) 611
BstKTI GATC 2 cut(s) 208, 567
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 205, 564
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 564
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 564
BsuRI GGCC 1 cut(s) 679
BtsCI GGATG 4 cut(s) 48, 75, 405, 527
BtsIMutI CAGTG 1 cut(s) 575
BtuMI TCGCGA 1 cut(s) 611
Cac8I GCNNGC 1 cut(s) 86
CciI TCATGA 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 106, 448
Csp6I GTAC 3 cut(s) 59, 268, 664
CviAII CATG 3 cut(s) 241, 292, 312
CviJI RGCY 4 cut(s) 117, 123, 591, 679
CviKI_1 RGCY 4 cut(s) 117, 123, 591, 679
CviQI GTAC 3 cut(s) 59, 268, 664
DdeI CTNAG 2 cut(s) 395, 561
DpnI GATC 2 cut(s) 207, 566
DpnII GATC 2 cut(s) 205, 564
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 106, 448
Eco88I CYCGRG 2 cut(s) 517, 586
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 3 cut(s) 244, 295, 315
FaiI YATR 7 cut(s) 168, 170, 200, 242, 293, 313, 486
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 240, 291, 311
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 403
FokI GGATG 4 cut(s) 55, 82, 392, 534
Fsp4HI GCNGC 1 cut(s) 403
FspBI CTAG 3 cut(s) 32, 287, 471
GluI GCNGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 679
Hin1II CATG 3 cut(s) 244, 295, 315
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 3 cut(s) 158, 280, 334
HphI GGTGA 2 cut(s) 215, 573
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 13, 672
Hpy188III TCNNGA 6 cut(s) 241, 338, 471, 493, 519, 610
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 43, 152, 241, 320
HpyCH4III ACNGT 2 cut(s) 224, 579
HpyCH4V TGCA 4 cut(s) 4, 75, 315, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 395, 561
Hsp92II CATG 3 cut(s) 244, 295, 315
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 564
LpnPI CCDG 9 cut(s) 99, 117, 133, 160, 168, 176, 351, 600, 617
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 414
MaeI CTAG 3 cut(s) 32, 287, 471
MaeIII GTNAC 2 cut(s) 224, 579
MalI GATC 2 cut(s) 207, 566
MboI GATC 2 cut(s) 205, 564
MboII GAAGA 3 cut(s) 164, 289, 343
MflI RGATCY 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 6 cut(s) 320, 341, 424, 600, 605, 619
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 408, 636
MnlI CCTC 5 cut(s) 90, 166, 478, 489, 595
Mox20I TGGCCA 1 cut(s) 679
MscI TGGCCA 1 cut(s) 679
MseI TTAA 3 cut(s) 375, 507, 593
Msp20I TGGCCA 1 cut(s) 679
MspCI CTTAAG 1 cut(s) 592
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 205, 564
NlaIII CATG 3 cut(s) 244, 295, 315
NmuCI GTSAC 1 cut(s) 579
NruI TCGCGA 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 586
PagI TCATGA 1 cut(s) 240
PasI CCCWGGG 1 cut(s) 147
PfeI GAWTC 2 cut(s) 280, 334
PflMI CCANNNNNTGG 2 cut(s) 169, 686
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 2 cut(s) 106, 448
PspXI VCTCGAGB 1 cut(s) 586
PsuI RGATCY 1 cut(s) 564
RruI TCGCGA 1 cut(s) 611
RsaI GTAC 3 cut(s) 60, 269, 665
RsaNI GTAC 3 cut(s) 59, 268, 664
SaqAI TTAA 3 cut(s) 375, 507, 593
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 2 cut(s) 205, 564
Sau96I GGNCC 2 cut(s) 106, 448
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 148
SfaNI GCATC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 586
SinI GGWCC 2 cut(s) 106, 448
SlaI CTCGAG 1 cut(s) 586
SmlI CTYRAG 2 cut(s) 586, 592
SmoI CTYRAG 2 cut(s) 586, 592
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 6 cut(s) 320, 341, 424, 600, 605, 619
SspMI CTAG 3 cut(s) 32, 287, 471
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 224, 579
TaqI TCGA 2 cut(s) 492, 587
TasI AATT 6 cut(s) 320, 341, 424, 600, 605, 619
TfiI GAWTC 2 cut(s) 280, 334
Tru1I TTAA 3 cut(s) 375, 507, 593
Tru9I TTAA 3 cut(s) 375, 507, 593
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 2 cut(s) 169, 686
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 106, 448
XapI RAATTY 4 cut(s) 320, 424, 605, 619
XbaI TCTAGA 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 586
XspI CTAG 3 cut(s) 32, 287, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.