Rmu_sc0025980.1_g000001

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025980.1
OG0020580
Physical Location & Seq
Forward (+)
1 .. 631
631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025980.1_g000001.1.cds

Sequence Viewer

Length: 631 bp
tttggattacggttacacgatcacaatagcgaataaaggtgcggacagatactattcaaaaattcaagaagcctttgcagctattgatatctcaagcaataaatttgaagggaagattgatgaactgattgggaatctaaaagggcttcgctcgctcaatgtttccagtaacattttcaccggtgagatcccatcatctttgggaaacttaacactgctggaggcattggacctttcacagaacaagctctcaggagagattccccaacagctggcgcagctgacattcctttcacaattcaatgctgctcacaacaggctcacaggtcctataccccaaggaaaccaatttgctacgttcaatagcacttcctatgagggaaaccctggattatgtggagatccgttgccaaccaaatgtggaaacccaacggcccatcaactgcctcctccaactgtacaagatgcttattcttccgagtccagaattgaatggatatttgttgtggcaggacttggaagtggtttggtgcagggaataattcttgcggatcttatgatcagaaggaggtatgcattgtttcttaaaattgttgacatgcttgtcagaacagtgaaaaggagaaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

209

Amino Acids

22.89

Weight (kDa)

8.56

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020580)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251181
rosa_laevigata RLG00000002144 RLG00000015476
rosa_multiflora Rmu_sc0004077.1_g000011 Rmu_sc0025980.1_g000001
rosa_samantha Rh1BG172500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 603
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 2 cut(s) 42, 549
AclWI GGATC 3 cut(s) 182, 396, 559
AcsI RAATTY 2 cut(s) 61, 102
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 272
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 58, 66, 108, 302, 362, 492
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 4 cut(s) 81, 248, 272, 281
AluI AGCT 4 cut(s) 81, 248, 272, 281
AlwI GGATC 3 cut(s) 182, 396, 559
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 3 cut(s) 78, 278, 306
ApoI RAATTY 2 cut(s) 61, 102
AsiGI ACCGGT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 230, 327, 434
AsuHPI GGTGA 2 cut(s) 170, 195
AvaII GGWCC 2 cut(s) 230, 327
BbvI GCAGC 3 cut(s) 90, 290, 293
BccI CCATC 2 cut(s) 200, 445
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 388
BclI TGATCA 1 cut(s) 559
BisI GCNGC 3 cut(s) 79, 279, 307
BlsI GCNGC 3 cut(s) 80, 280, 308
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 230, 327
BmgT120I GGNCC 3 cut(s) 230, 327, 434
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 338, 386
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 338, 386
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 3 cut(s) 90, 290, 293
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 1 cut(s) 435
BshTI ACCGGT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 272
BsnI GGCC 1 cut(s) 435
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 5 cut(s) 19, 187, 401, 551, 559
BspACI CCGC 2 cut(s) 42, 549
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 1 cut(s) 264
BspPI GGATC 3 cut(s) 182, 396, 559
BsrFI RCCGGY 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 458
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 338, 386
BssMI GATC 5 cut(s) 19, 187, 401, 551, 559
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 3 cut(s) 12, 458, 614
BstAUI TGTACA 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 153, 274
BstDEI CTNAG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 5 cut(s) 22, 190, 404, 554, 562
BstMBI GATC 5 cut(s) 19, 187, 401, 551, 559
BstMWI GCNNNNNNNGC 3 cut(s) 78, 152, 278
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 3 cut(s) 90, 290, 293
BstX2I RGATCY 3 cut(s) 187, 401, 551
BstYI RGATCY 3 cut(s) 187, 401, 551
BsuRI GGCC 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 619
Cac8I GCNNGC 2 cut(s) 153, 274
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 230, 327, 434
Csp6I GTAC 1 cut(s) 459
CspAI ACCGGT 1 cut(s) 180
CviAII CATG 1 cut(s) 599
CviJI RGCY 8 cut(s) 72, 81, 146, 248, 272, 281, 320, 435
CviKI_1 RGCY 8 cut(s) 72, 81, 146, 248, 272, 281, 320, 435
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 1 cut(s) 251
DpnI GATC 5 cut(s) 21, 189, 403, 553, 561
DpnII GATC 5 cut(s) 19, 187, 401, 551, 559
DrdI GACNNNNNNGTC 1 cut(s) 603
DseDI GACNNNNNNGTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 338
Eco32I GATATC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 230, 327
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 386
EcoRV GATATC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 1 cut(s) 602
FaiI YATR 6 cut(s) 333, 376, 395, 558, 574, 600
FatI CATG 1 cut(s) 598
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 79, 279, 307
Fsp4HI GCNGC 3 cut(s) 79, 279, 307
GlaI GCGC 1 cut(s) 277
GluI GCNGC 3 cut(s) 79, 279, 307
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 435
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 602
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 596
HindII GTYRAC 1 cut(s) 596
HinfI GANTC 3 cut(s) 134, 260, 480
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 170, 195
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 3 cut(s) 479, 564, 609
Hpy188III TCNNGA 3 cut(s) 66, 253, 484
Hpy8I GTNNAC 1 cut(s) 596
HpyAV CCTTC 3 cut(s) 102, 559, 619
HpyCH4III ACNGT 3 cut(s) 12, 458, 614
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 78, 533, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 152, 278
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 602
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 19, 187, 401, 551, 559
Lsp1109I GCAGC 3 cut(s) 90, 290, 293
LweI GCATC 1 cut(s) 455
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 12, 168
MalI GATC 5 cut(s) 21, 189, 403, 553, 561
MboI GATC 5 cut(s) 19, 187, 401, 551, 559
MboII GAAGA 2 cut(s) 125, 466
MflI RGATCY 3 cut(s) 187, 401, 551
MluCI AATT 7 cut(s) 61, 102, 297, 348, 487, 541, 589
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 5 cut(s) 215, 371, 457, 460, 562
Mph1103I ATGCAT 1 cut(s) 578
MseI TTAA 2 cut(s) 210, 586
MspA1I CMGCKG 2 cut(s) 272, 281
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 78, 152, 278
NdeII GATC 5 cut(s) 19, 187, 401, 551, 559
NlaIII CATG 1 cut(s) 602
NsiI ATGCAT 1 cut(s) 578
NspI RCATGY 1 cut(s) 602
PfeI GAWTC 2 cut(s) 134, 260
PflMI CCANNNNNTGG 1 cut(s) 272
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 3 cut(s) 80, 280, 308
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspPI GGNCC 3 cut(s) 230, 327, 434
PspPPI RGGWCCY 1 cut(s) 327
PsuI RGATCY 3 cut(s) 187, 401, 551
PvuII CAGCTG 2 cut(s) 272, 281
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 210, 586
SatI GCNGC 3 cut(s) 79, 279, 307
Sau3AI GATC 5 cut(s) 19, 187, 401, 551, 559
Sau96I GGNCC 3 cut(s) 230, 327, 434
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 1 cut(s) 455
SgrAI CRCCGGYG 1 cut(s) 180
SinI GGWCC 2 cut(s) 230, 327
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 7 cut(s) 61, 102, 297, 348, 487, 541, 589
SsiI CCGC 2 cut(s) 42, 549
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 12, 458, 614
TaiI ACGT 1 cut(s) 360
TasI AATT 7 cut(s) 61, 102, 297, 348, 487, 541, 589
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 2 cut(s) 134, 260
Tru1I TTAA 2 cut(s) 210, 586
Tru9I TTAA 2 cut(s) 210, 586
TscAI CASTG 2 cut(s) 220, 619
TseI GCWGC 3 cut(s) 78, 278, 306
TspDTI ATGAA 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 220, 619
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 230, 327
XapI RAATTY 2 cut(s) 61, 102
XceI RCATGY 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.