Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018645

Physical Location & Seq

Genomic Coordinates Reverse (-)

40584553 .. 40588281

Gene Structure 3729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGCATGATGTCATCAGGGATACAGCCATTCAAATTGCACGATCTGATGATGAGCACCAATTTTTCGTCGAAGCTGGCAGCGGTTTGAAGAATTGGCCACGTGGATTGCAAAAAGGCCACTCTGCAATTTCACTCATGAAGAACGACATTTGCGAGCTACCTGAAGAGCTGATCCCTGATACTTTTTTCGAAACTACTAGTTCACTAAGAGTTGTAGATCTTAGTTACACTAGTATATCATCCCTATCCAAGTCATTTAGTCTCCTAAGCAATCTCAAAGGTTTGTATTTGGATTATTGCCGGAACATAGCTGACATTTCCATACTGAAATATTTTAAAAAGCTTGAGATTCTCAGTATGAAAGAATACCCTCTAAAGGAATTGTCAACAGAAATAGGAAATTTGACCAATTTAAGGGTGTTGGATGTTAGCGGCGAGGGTCCAGGCGGTGGAGGTATCATCAGAATTCCATCTGGGGTGATATCAAAATTGCGTAAGTTAGAAGAAATATGCCTGCACTGTGGATTTTGGGACTGGGGGAGTAAAGTTGAGGGAGAAGGAGAAACAACTAATGTTAGCTTTGATGAGGCACTTCTGGGTGAATTAATCAGTGTATCGCCAAGTGCAATTCAGAGTTTATCCATCCGAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTAACAGTGAATTTATCAGTGCATTGTTTCGGGCATTTCATATTGCCAAGTGCATTAAAGAGTTCTTCCCTGGAGACAGTGAATCTAAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTCGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCAGGTGCATTTCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCGTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGGGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATTCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

476

Amino Acids

51.68

Weight (kDa)

4.6

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	44 - 176	9.3e-10	Leucine-rich repeat region
LRR_8	PF13855	58 - 101	5.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018645)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002844 RLG00000002846 RLG00000002847 RLG00000002848 RLG00000002849 RLG00000002850 RLG00000002851 RLG00000002852 RLG00000002853 RLG00000002854

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	1009
AciI	CCGC	3 cut(s)	81, 432, 447
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	6 cut(s)	400, 465, 692, 947, 1202, 1364
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	376, 414, 449
AgsI	TTSAA	3 cut(s)	32, 88, 1393
AhlI	ACTAGT	2 cut(s)	197, 230
AjnI	CCWGG	2 cut(s)	442, 751
AluBI	AGCT	8 cut(s)	74, 157, 169, 311, 343, 579, 979, 1234
AluI	AGCT	8 cut(s)	74, 157, 169, 311, 343, 579, 979, 1234
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	6 cut(s)	266, 642, 750, 816, 1071, 1326
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	95, 115
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	6 cut(s)	400, 465, 692, 947, 1202, 1364
AseI	ATTAAT	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	490, 611
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	97
BbrPI	CACGTG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	6 cut(s)	478, 650, 824, 905, 1079, 1160
BciT130I	CCWGG	2 cut(s)	444, 753
BciVI	GTATCC	1 cut(s)	13
BcoDI	GTCTC	6 cut(s)	266, 642, 750, 816, 1071, 1326
BcuI	ACTAGT	2 cut(s)	197, 230
BfaI	CTAG	2 cut(s)	198, 231
BfuI	GTATCC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	79, 433
BlsI	GCNGC	2 cut(s)	80, 434
Bme1390I	CCNGG	2 cut(s)	444, 753
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	444, 753
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	6 cut(s)	677, 851, 932, 1106, 1187, 1361
BmuI	ACTGGG	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	774
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 414, 449
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	444, 753
BseDI	CCNNGG	1 cut(s)	751
BseLI	CCNNNNNNNGG	3 cut(s)	376, 414, 449
BseMII	CTCAG	9 cut(s)	367, 651, 825, 906, 1014, 1080, 1161, 1269, 1335
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	97, 117
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	3 cut(s)	376, 414, 449
BsmAI	GTCTC	6 cut(s)	266, 642, 750, 816, 1071, 1326
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	2 cut(s)	854, 1226
BsnI	GGCC	2 cut(s)	97, 117
Bso31I	GGTCTC	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	41, 171, 217
BspACI	CCGC	3 cut(s)	81, 432, 447
BspANI	GGCC	2 cut(s)	97, 117
BspCNI	CTCAG	9 cut(s)	366, 652, 826, 907, 1015, 1081, 1162, 1270, 1336
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	3 cut(s)	41, 171, 217
Bst2UI	CCWGG	2 cut(s)	444, 753
Bst6I	CTCTTC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	5 cut(s)	76, 155, 515, 981, 1236
BstKTI	GATC	3 cut(s)	44, 174, 220
BstMAI	GTCTC	6 cut(s)	266, 642, 750, 816, 1071, 1326
BstMBI	GATC	3 cut(s)	41, 171, 217
BstNI	CCWGG	2 cut(s)	444, 753
BstSCI	CCNGG	2 cut(s)	442, 751
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	97, 117
Cac8I	GCNNGC	5 cut(s)	76, 155, 515, 981, 1236
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	440
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	2 cut(s)	5, 136
DpnI	GATC	3 cut(s)	43, 173, 219
DpnII	GATC	3 cut(s)	41, 171, 217
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	442, 751
EcoRV	GATATC	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 139
FaiI	YATR	9 cut(s)	6, 137, 236, 308, 323, 359, 511, 723, 1370
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	2 cut(s)	4, 135
FblI	GTMKAC	1 cut(s)	1009
Fnu4HI	GCNGC	2 cut(s)	79, 433
Fsp4HI	GCNGC	2 cut(s)	79, 433
FspBI	CTAG	2 cut(s)	198, 231
GluI	GCNGC	2 cut(s)	79, 433
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	97, 117
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	2 cut(s)	8, 139
HincII	GTYRAC	2 cut(s)	387, 1010
HindII	GTYRAC	2 cut(s)	387, 1010
HindIII	AAGCTT	1 cut(s)	341
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	490, 611
Hpy166II	GTNNAC	3 cut(s)	203, 387, 1010
Hpy188III	TCNNGA	2 cut(s)	136, 1331
Hpy8I	GTNNAC	3 cut(s)	203, 387, 1010
Hpy99I	CGWCG	2 cut(s)	71, 1011
HpyAV	CCTTC	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	8, 139
Kzo9I	GATC	3 cut(s)	41, 171, 217
LguI	GCTCTTC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	6 cut(s)	677, 851, 932, 1106, 1187, 1361
MaeI	CTAG	2 cut(s)	198, 231
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	43, 173, 219
MboI	GATC	3 cut(s)	41, 171, 217
MboII	GAAGA	7 cut(s)	100, 151, 176, 515, 739, 994, 1249
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	97
MluNI	TGGCCA	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	381, 430, 446, 544, 580, 1272
Mox20I	TGGCCA	1 cut(s)	97
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	5 cut(s)	336, 413, 605, 684, 738
Msp20I	TGGCCA	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	444, 753
Mva1269I	GAATGC	2 cut(s)	854, 1226
MvaI	CCWGG	2 cut(s)	444, 753
NdeII	GATC	3 cut(s)	41, 171, 217
NlaIII	CATG	2 cut(s)	8, 139
NlaIV	GGNNCC	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	854, 1226
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	80, 434
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	442, 751
PspCI	CACGTG	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	442, 751
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	1008
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	336, 413, 605, 684, 738
SatI	GCNGC	2 cut(s)	79, 433
Sau3AI	GATC	3 cut(s)	41, 171, 217
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	444, 753
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	6 cut(s)	677, 851, 932, 1106, 1187, 1361
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	2 cut(s)	197, 230
SsiI	CCGC	3 cut(s)	81, 432, 447
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	2 cut(s)	198, 231
StyD4I	CCNGG	2 cut(s)	442, 751
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	6 cut(s)	69, 189, 858, 1009, 1264, 1330
TauI	GCSGC	1 cut(s)	435
Tru1I	TTAA	5 cut(s)	336, 413, 605, 684, 738
Tru9I	TTAA	5 cut(s)	336, 413, 605, 684, 738
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	9 cut(s)	152, 374, 710, 801, 858, 1056, 1113, 1311, 1401
TspGWI	ACGGA	1 cut(s)	995
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	440
VspI	ATTAAT	1 cut(s)	605
XapI	RAATTY	6 cut(s)	400, 465, 692, 947, 1202, 1364
XmiI	GTMKAC	1 cut(s)	1009
XspI	CTAG	2 cut(s)	198, 231
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.