Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018645

Physical Location & Seq

Genomic Coordinates Reverse (-)

40710920 .. 40716011

Gene Structure 5092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGTCAAGCTCTAAAATAGCCTCTGCATCATCATCAGCTCCTCACTGGAAGGGTCCTGACACTCGCAGGAGTATCACATCCCAAATACACAATCGACTAGACAACAGAGGAATTAAAACATTCCTGGATGATCCAGATATCAAGGTAGGGGATGCTATTTCTCCCACTCTCCTAAGAGCAATTGAAGAATCAAGGGCACTACTGAGTGAATTAATCAGTGCAGCGTTAAGTGCATCTCAGAGTTTATCCATCCGAGACCGTGAATCTGGGAGGGCATCGTCAAGTGCATTTGACAGTGAACTTATCAGTGTATTGCCAAGGGCATTTCAGATTGCCAAGTGCATTGAAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTAACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

261

Amino Acids

28.0

Weight (kDa)

4.8

Isoelectric Point (pI)

81.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 68	1e-08	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018645)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002844 RLG00000002846 RLG00000002847 RLG00000002848 RLG00000002849 RLG00000002850 RLG00000002851 RLG00000002852 RLG00000002853 RLG00000002854

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	557, 719
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	188, 350, 748
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	12, 41, 589
AluI	AGCT	3 cut(s)	12, 41, 589
Alw26I	GTCTC	3 cut(s)	252, 426, 681
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	557, 719
AseI	ATTAAT	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	4 cut(s)	260, 434, 515, 689
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	252, 426, 681
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	7 cut(s)	38, 145, 245, 287, 461, 542, 716
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	320
BseMII	CTCAG	7 cut(s)	197, 254, 369, 435, 516, 624, 690
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	252, 426, 681
BsmI	GAATGC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	7 cut(s)	198, 253, 370, 436, 517, 625, 691
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	8 cut(s)	176, 206, 240, 378, 444, 525, 633, 699
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	3 cut(s)	252, 426, 681
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	56
CviJI	RGCY	4 cut(s)	12, 23, 41, 589
CviKI_1	RGCY	4 cut(s)	12, 23, 41, 589
DdeI	CTNAG	8 cut(s)	176, 206, 240, 378, 444, 525, 633, 699
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaiI	YATR	1 cut(s)	725
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	9 cut(s)	191, 266, 374, 398, 476, 521, 629, 653, 695
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	59, 137
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	8 cut(s)	176, 206, 240, 378, 444, 525, 633, 699
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	34, 55, 72, 113, 140, 150, 255, 599
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	7 cut(s)	38, 145, 245, 287, 461, 542, 716
MaeI	CTAG	1 cut(s)	101
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	200, 349, 362, 604
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	6 cut(s)	114, 183, 212, 492, 557, 719
MnlI	CCTC	6 cut(s)	34, 54, 104, 267, 372, 627
MseI	TTAA	4 cut(s)	117, 215, 230, 390
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	9 cut(s)	191, 266, 374, 398, 476, 521, 629, 653, 695
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	117, 215, 230, 390
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	4 cut(s)	14, 43, 150, 591
SfaNI	GCATC	7 cut(s)	38, 145, 245, 287, 461, 542, 716
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	6 cut(s)	114, 183, 212, 492, 557, 719
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	320
TaqI	TCGA	3 cut(s)	97, 364, 619
TasI	AATT	6 cut(s)	114, 183, 212, 492, 557, 719
TfiI	GAWTC	9 cut(s)	191, 266, 374, 398, 476, 521, 629, 653, 695
Tru1I	TTAA	4 cut(s)	117, 215, 230, 390
Tru9I	TTAA	4 cut(s)	117, 215, 230, 390
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	4 cut(s)	411, 468, 666, 756
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	2 cut(s)	557, 719
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.