RLG00000002853

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018645
Physical Location & Seq
Reverse (-)
40762015 .. 40766365
4351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002853

Sequence Viewer

Length: 2160 bp
ATGGGGGGCGTTGGAAAGACATCCCTTGTGAAACATGTCGGTCGAGAAGCTCGGAAGCAAGGCCTTTTTGATCATGTGATTATGGGTGGAGTTAATCAAATCCCTGATCTGAAAAATATTCAAGGCATGTTGGCAGATGGGCTAGGCATCCAGTTGACGTACGAGACAGTGGAAGGAAGAGCTTCAAGATTGTCTTCGGTGATAGGGGGAAGAAACAAAGTCCTTATAATCTTGGACAACGTTTGGGATGAAATAGATCTGTCAGTCATAGGAATTCCCACCTATGACAGTCTTCAGATTTGCAACTCCAAAGTCCTACTTACCACAAGGATACGGAATGTTTGTCATGTCATGAAAAGCCAAGAAATCACCCTCAATAGCCTATTGAAAGAAGATTCATGGAGATTGTTTGTGGAATATGCAAACAGGTCTTTTGAATCGACCGATTTCGAGGATGTCGCAAGGAAGGTAGCTGGAGAATGTGGTGGCCTACCAGTTGCATTGAGAGCAGTTGCAAGGGCACTTGGAAATAAAGACTTGAAAGAATGGAAAAGAGCAGTTCCACGGCTAAAGAAGTCGCAAGCTGCCAACTGTGACGATAAGGGAGATGTATCCAAATGCATAAAATTAAGCTATGATTTCTTGAGAGATGAGGACTCCAAGTCATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGGCTCTGACATCCAAATAGAACACTTATTCAAGTATGGGATCGGGACAGGATTGTTTAAAGATGCTGGGACAATCCAAGAAGCCAGAGGAGACGCTGATTCAGTGGCCAAGCACCTTATATATTCCAGCTTGCTTTTGGATAGTGAATATGATGGATGTGTTAGGATGCATGATGTCATCCGGGATACAGCCATTCAAATTGCATCCAAAGGTGAGCGCACATTTTTCGTAGAAGCTGGCTGTCGTTTGGAGAATTGGCCACTTCAATTGCATGAAGACCACTCTGCAATTTCACTCATGAAGAACAACATTCGCAAGCTACCTGAAGAGCTGGTATGTCCGAAACTCCAAATTTTATTGCTACAAGAGAATGATGGTTTAGATCAGATCCCTGATACTTTTTTTGAAACTACTAGTTCTTTTGAAACTACTAGTTCTTTCGAAACTACTAGTTCACCAAGAGCTAGTTCACTACGAGTCATAGATCTTAGTTACACTAGTATATCATCCCTATCTAAGTCATTTATTCTCCTAAGCAATCTCAAAGGTTTGTATTTGGATTATTGCCGGAACATAGCTGACATTTCCATACTGAAATATTTTAAGAAGCCTGAGATTCTCAGTATGAAAGAATGCCCTCTAAAGGAATTGTCAACAGAAATAGGAAATTTGATCAATTTAAGGGTGTTGGATGTTAGTGGTGCAGTCGGTGGAGGTATAATCAGAATTCCATCTGGGGTGATATCAAAATTGCGTAAGTTAGAAGAAATATGCCTGCACTGTGGATTTTGGGACTGGGGGAGTAAAGTTGAGGGAAGAGAAACAACTAATGCTAGCTTTGATGAGAGTGCATTTGACATTGACAGTGAATCTGACAGGGCACTACTGAGTGAATTAATCAGTGCAGCGTTAAGTGCATCTCAGAGTTTATCCATCCGAGACCGTGAATCTGGGAGGGCATCGTCAAGTGCATTTGACAGTGAACTTATCAGTGTATTGCCAAGGGCATTTCAGATTGCCAAGTGCATTGAAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTAACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAATGA

Protein Analysis

720

Amino Acids

79.2

Weight (kDa)

5.06

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 143 1.7e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 743, 1078
AcoI YGGCCR 2 cut(s) 801, 953
AcsI RAATTY 6 cut(s) 273, 1047, 1363, 1422, 1934, 2096
AcuI CTGAAG 2 cut(s) 278, 1041
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 1339
AflIII ACRYGT 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 661
AhlI ACTAGT 4 cut(s) 1109, 1127, 1145, 1193
AjuI GAANNNNNNNTTGG 4 cut(s) 653, 685, 1147, 1179
Alw26I GTCTC 5 cut(s) 158, 780, 1629, 1803, 2058
AlwI GGATC 2 cut(s) 743, 1078
AoxI GGCC 4 cut(s) 61, 487, 801, 953
ApeKI GCWGC 2 cut(s) 584, 1601
ApoI RAATTY 6 cut(s) 273, 1047, 1363, 1422, 1934, 2096
AseI ATTAAT 1 cut(s) 1592
Asp700I GAANNNNTTC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 915
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 5 cut(s) 211, 361, 920, 1143, 1447
AsuII TTCGAA 1 cut(s) 1137
AsuNHI GCTAGC 1 cut(s) 1529
BaeGI GKGCMC 2 cut(s) 523, 1579
BalI TGGCCA 2 cut(s) 803, 955
BbsI GAAGAC 3 cut(s) 186, 284, 978
BbvI GCAGC 2 cut(s) 571, 1613
BccI CCATC 8 cut(s) 131, 842, 1064, 1435, 1637, 1811, 1892, 2066
BceAI ACGGC 1 cut(s) 581
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciVI GTATCC 3 cut(s) 324, 622, 874
BclI TGATCA 2 cut(s) 70, 1368
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 5 cut(s) 158, 780, 1629, 1803, 2058
BcuI ACTAGT 4 cut(s) 1109, 1127, 1145, 1193
BfaI CTAG 7 cut(s) 143, 1110, 1128, 1146, 1161, 1194, 1530
BfuI GTATCC 3 cut(s) 324, 622, 874
BglII AGATCT 2 cut(s) 256, 1180
BisI GCNGC 2 cut(s) 585, 1602
BlsI GCNGC 2 cut(s) 586, 1603
Bme1390I CCNGG 1 cut(s) 878
BmeRI GACNNNNNGTC 1 cut(s) 661
BmrFI CCNGG 1 cut(s) 878
BmrI ACTGGG 1 cut(s) 1501
BmsI GCATC 9 cut(s) 156, 748, 852, 908, 1622, 1664, 1838, 1919, 2093
BmtI GCTAGC 1 cut(s) 1533
BmuI ACTGGG 1 cut(s) 1501
BpiI GAAGAC 3 cut(s) 186, 284, 978
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 1229
Bpu14I TTCGAA 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 878
BsaI GGTCTC 1 cut(s) 1629
BsaJI CCNNGG 2 cut(s) 563, 1697
Bsc4I CCNNNNNNNGG 1 cut(s) 1339
Bse1I ACTGG 3 cut(s) 151, 494, 1496
BseDI CCNNGG 2 cut(s) 563, 1697
BseLI CCNNNNNNNGG 1 cut(s) 1339
BseMII CTCAG 9 cut(s) 1299, 1330, 1574, 1631, 1746, 1812, 1893, 2001, 2067
BseNI ACTGG 3 cut(s) 151, 494, 1496
BseRI GAGGAG 1 cut(s) 798
BseSI GKGCMC 2 cut(s) 523, 1579
BseXI GCAGC 2 cut(s) 571, 1613
BseYI CCCAGC 1 cut(s) 761
BsgI GTGCAG 3 cut(s) 1419, 1457, 1620
Bsh1285I CGRYCG 2 cut(s) 43, 444
BshFI GGCC 4 cut(s) 63, 489, 803, 955
BsiEI CGRYCG 2 cut(s) 43, 444
BsiSI CCGG 2 cut(s) 877, 1264
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 3 cut(s) 754, 778, 1502
BslI CCNNNNNNNGG 1 cut(s) 1339
BsmAI GTCTC 5 cut(s) 158, 780, 1629, 1803, 2058
BsmBI CGTCTC 1 cut(s) 780
BsmFI GGGAC 3 cut(s) 754, 778, 1502
BsmI GAATGC 2 cut(s) 1334, 1958
BsnI GGCC 4 cut(s) 63, 489, 803, 955
Bso31I GGTCTC 1 cut(s) 1629
Bsp119I TTCGAA 1 cut(s) 1137
Bsp1286I GDGCHC 2 cut(s) 523, 1579
Bsp143I GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
BspANI GGCC 4 cut(s) 63, 489, 803, 955
BspCNI CTCAG 9 cut(s) 1300, 1329, 1575, 1630, 1747, 1813, 1894, 2002, 2068
BspHI TCATGA 2 cut(s) 351, 993
BspOI GCTAGC 1 cut(s) 1533
BspPI GGATC 2 cut(s) 743, 1078
BspQI GCTCTTC 2 cut(s) 172, 1017
BspT104I TTCGAA 1 cut(s) 1137
BspTNI GGTCTC 1 cut(s) 1629
BsrI ACTGG 3 cut(s) 151, 494, 1496
BssECI CCNNGG 2 cut(s) 563, 1697
BssMI GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
BssT1I CCWWGG 1 cut(s) 1697
Bst6I CTCTTC 4 cut(s) 172, 1017, 1507, 1722
BstBI TTCGAA 1 cut(s) 1137
BstC8I GCNNGC 7 cut(s) 582, 827, 934, 1013, 1472, 1531, 1968
BstDSI CCRYGG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 8 cut(s) 73, 109, 259, 738, 1081, 1086, 1183, 1371
BstMAI GTCTC 5 cut(s) 158, 780, 1629, 1803, 2058
BstMBI GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
BstMCI CGRYCG 2 cut(s) 43, 444
BstMWI GCNNNNNNNGC 2 cut(s) 506, 1610
BstNSI RCATGY 2 cut(s) 38, 130
BstSCI CCNGG 1 cut(s) 876
BstSLI GKGCMC 2 cut(s) 523, 1579
BstV1I GCAGC 2 cut(s) 571, 1613
BstV2I GAAGAC 3 cut(s) 186, 284, 978
BstX2I RGATCY 3 cut(s) 256, 1083, 1180
BstYI RGATCY 3 cut(s) 256, 1083, 1180
BsuI GTATCC 3 cut(s) 324, 622, 874
BsuRI GGCC 4 cut(s) 63, 489, 803, 955
BtgI CCRYGG 1 cut(s) 563
Cac8I GCNNGC 7 cut(s) 582, 827, 934, 1013, 1472, 1531, 1968
CciI TCATGA 2 cut(s) 351, 993
CfoI GCGC 1 cut(s) 915
CseI GACGC 1 cut(s) 797
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 945, 980
CviQI GTAC 1 cut(s) 160
DpnI GATC 8 cut(s) 72, 108, 258, 737, 1080, 1085, 1182, 1370
DpnII GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
DraI TTTAAA 1 cut(s) 754
DriI GACNNNNNGTC 1 cut(s) 661
EaeI YGGCCR 2 cut(s) 801, 953
Eam1104I CTCTTC 4 cut(s) 172, 1017, 1507, 1722
Eam1105I GACNNNNNGTC 1 cut(s) 661
EarI CTCTTC 4 cut(s) 172, 1017, 1507, 1722
Eco130I CCWWGG 1 cut(s) 1697
Eco147I AGGCCT 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 1629
Eco32I GATATC 1 cut(s) 1440
Eco57I CTGAAG 2 cut(s) 278, 1041
EcoRI GAATTC 2 cut(s) 273, 1422
EcoRV GATATC 1 cut(s) 1440
EcoT14I CCWWGG 1 cut(s) 1697
EcoT22I ATGCAT 2 cut(s) 623, 867
ErhI CCWWGG 1 cut(s) 1697
Esp3I CGTCTC 1 cut(s) 780
FalI AAGNNNNNCTT 6 cut(s) 178, 210, 303, 335, 653, 685
FaqI GGGAC 3 cut(s) 754, 778, 1502
FbaI TGATCA 2 cut(s) 70, 1368
Fnu4HI GCNGC 2 cut(s) 585, 1602
Fsp4HI GCNGC 2 cut(s) 585, 1602
FspBI CTAG 7 cut(s) 143, 1110, 1128, 1146, 1161, 1194, 1530
GlaI GCGC 1 cut(s) 914
GluI GCNGC 2 cut(s) 585, 1602
GsaI CCCAGC 1 cut(s) 765
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 4 cut(s) 63, 489, 803, 955
HapII CCGG 2 cut(s) 877, 1264
HgaI GACGC 1 cut(s) 797
HhaI GCGC 1 cut(s) 915
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HincII GTYRAC 2 cut(s) 156, 1350
HindII GTYRAC 2 cut(s) 156, 1350
HpaII CCGG 2 cut(s) 877, 1264
HphI GGTGA 5 cut(s) 211, 361, 920, 1143, 1447
Hpy166II GTNNAC 5 cut(s) 156, 1151, 1166, 1350, 1679
Hpy188III TCNNGA 6 cut(s) 44, 186, 352, 643, 739, 994
Hpy8I GTNNAC 5 cut(s) 156, 1151, 1166, 1350, 1679
HpyAV CCTTC 3 cut(s) 167, 460, 689
HpyCH4IV ACGT 2 cut(s) 158, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 1610
HpySE526I ACGT 2 cut(s) 158, 240
HspAI GCGC 1 cut(s) 913
Ksp22I TGATCA 2 cut(s) 70, 1368
Kzo9I GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
LguI GCTCTTC 2 cut(s) 172, 1017
Lsp1109I GCAGC 2 cut(s) 571, 1613
LweI GCATC 9 cut(s) 156, 748, 852, 908, 1622, 1664, 1838, 1919, 2093
MaeI CTAG 7 cut(s) 143, 1110, 1128, 1146, 1161, 1194, 1530
MaeII ACGT 2 cut(s) 158, 240
MaeIII GTNAC 2 cut(s) 593, 1187
MalI GATC 8 cut(s) 72, 108, 258, 737, 1080, 1085, 1182, 1370
MboI GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
MfeI CAATTG 1 cut(s) 962
MflI RGATCY 3 cut(s) 256, 1083, 1180
MhlI GDGCHC 2 cut(s) 523, 1579
MlsI TGGCCA 2 cut(s) 803, 955
MluNI TGGCCA 2 cut(s) 803, 955
MlyI GAGTC 2 cut(s) 650, 1182
MmeI TCCRAC 1 cut(s) 1365
Mox20I TGGCCA 2 cut(s) 803, 955
Mph1103I ATGCAT 2 cut(s) 623, 867
MroXI GAANNNNTTC 1 cut(s) 181
MscI TGGCCA 2 cut(s) 803, 955
MseI TTAA 8 cut(s) 93, 629, 753, 1299, 1376, 1592, 1607, 1767
Msp20I TGGCCA 2 cut(s) 803, 955
MspI CCGG 2 cut(s) 877, 1264
MspR9I CCNGG 1 cut(s) 878
MunI CAATTG 1 cut(s) 962
Mva1269I GAATGC 2 cut(s) 1334, 1958
MwoI GCNNNNNNNGC 2 cut(s) 506, 1610
NciI CCSGG 1 cut(s) 878
NdeII GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
NheI GCTAGC 1 cut(s) 1529
NmuCI GTSAC 1 cut(s) 593
NsiI ATGCAT 2 cut(s) 623, 867
NspI RCATGY 2 cut(s) 38, 130
NspV TTCGAA 1 cut(s) 1137
PagI TCATGA 2 cut(s) 351, 993
PceI AGGCCT 1 cut(s) 63
PciI ACATGT 1 cut(s) 34
PciSI GCTCTTC 2 cut(s) 172, 1017
PctI GAATGC 2 cut(s) 1334, 1958
PdmI GAANNNNTTC 1 cut(s) 181
Pfl23II CGTACG 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 876
PkrI GCNGC 2 cut(s) 586, 1603
PleI GAGTC 2 cut(s) 650, 1181
PpsI GAGTC 2 cut(s) 650, 1181
PscI ACATGT 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 1592
PsiI TTATAA 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 761
PspLI CGTACG 1 cut(s) 159
PsuI RGATCY 3 cut(s) 256, 1083, 1180
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SapI GCTCTTC 2 cut(s) 172, 1017
SaqAI TTAA 8 cut(s) 93, 629, 753, 1299, 1376, 1592, 1607, 1767
SatI GCNGC 2 cut(s) 585, 1602
Sau3AI GATC 8 cut(s) 70, 106, 256, 735, 1078, 1083, 1180, 1368
SchI GAGTC 2 cut(s) 650, 1182
ScrFI CCNGG 1 cut(s) 878
SduI GDGCHC 2 cut(s) 523, 1579
SfaNI GCATC 9 cut(s) 156, 748, 852, 908, 1622, 1664, 1838, 1919, 2093
SfuI TTCGAA 1 cut(s) 1137
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
SpeI ACTAGT 4 cut(s) 1109, 1127, 1145, 1193
SseBI AGGCCT 1 cut(s) 63
SspI AATATT 2 cut(s) 118, 1295
SspMI CTAG 7 cut(s) 143, 1110, 1128, 1146, 1161, 1194, 1530
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 876
StyI CCWWGG 1 cut(s) 1697
TaiI ACGT 2 cut(s) 161, 243
TaqI TCGA 6 cut(s) 43, 440, 450, 1137, 1741, 1996
TaqII GACCGA 2 cut(s) 29, 458
Tru1I TTAA 8 cut(s) 93, 629, 753, 1299, 1376, 1592, 1607, 1767
Tru9I TTAA 8 cut(s) 93, 629, 753, 1299, 1376, 1592, 1607, 1767
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 2 cut(s) 584, 1601
Tsp45I GTSAC 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 349
VspI ATTAAT 1 cut(s) 1592
XapI RAATTY 6 cut(s) 273, 1047, 1363, 1422, 1934, 2096
XceI RCATGY 2 cut(s) 38, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 7 cut(s) 143, 1110, 1128, 1146, 1161, 1194, 1530
Zsp2I ATGCAT 2 cut(s) 623, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.