Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018645

Physical Location & Seq

Genomic Coordinates Reverse (-)

40627268 .. 40632377

Gene Structure 5110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGTCAAGCTCTAAAATAGCCTCTGCATCATCATCAGCTCCTCACTGGAAGGGTCCTGACACTCGCAGGAGTATCACATCCCAAATACACAATCGACTAGACAACAGAGGAATTAAAACATTCCTGGATGATCCAGATATCAAGGTAGGGGATGCTATTTCTCCCACTCTCCTAAGAGCAATTGAAGAATCAAGTGAATCTGACAGGGCACTACTGAGTGAATTAATCAGTGCAGCGTTAAGTGCATCTCAGAGTTTATCCATCCGAGACCGTGAATCTGGGAGGGCATCGTCAAGTGCATTTGACAGTGAACTTATCAGTGTATTGCCAAGGGCATTTCAGATTGCCAAGTGCATTGAAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTAACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

265

Amino Acids

28.42

Weight (kDa)

4.71

Isoelectric Point (pI)

81.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 66	1.7e-07	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018645)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002844 RLG00000002846 RLG00000002847 RLG00000002848 RLG00000002849 RLG00000002850 RLG00000002851 RLG00000002852 RLG00000002853 RLG00000002854

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	569, 731
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	188, 362, 760
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	12, 41, 601
AluI	AGCT	3 cut(s)	12, 41, 601
Alw26I	GTCTC	3 cut(s)	264, 438, 693
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	569, 731
AseI	ATTAAT	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	4 cut(s)	272, 446, 527, 701
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	264, 438, 693
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	7 cut(s)	38, 145, 257, 299, 473, 554, 728
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	332
BseMII	CTCAG	7 cut(s)	209, 266, 381, 447, 528, 636, 702
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BsmAI	GTCTC	3 cut(s)	264, 438, 693
BsmI	GAATGC	1 cut(s)	593
Bso31I	GGTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	7 cut(s)	210, 265, 382, 448, 529, 637, 703
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	8 cut(s)	176, 218, 252, 390, 456, 537, 645, 711
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	3 cut(s)	264, 438, 693
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	56
CviJI	RGCY	4 cut(s)	12, 23, 41, 601
CviKI_1	RGCY	4 cut(s)	12, 23, 41, 601
DdeI	CTNAG	8 cut(s)	176, 218, 252, 390, 456, 537, 645, 711
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaiI	YATR	1 cut(s)	737
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	59, 137
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	8 cut(s)	176, 218, 252, 390, 456, 537, 645, 711
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	9 cut(s)	34, 55, 72, 113, 140, 150, 193, 267, 611
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	7 cut(s)	38, 145, 257, 299, 473, 554, 728
MaeI	CTAG	1 cut(s)	101
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	200, 361, 374, 616
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	6 cut(s)	114, 183, 224, 504, 569, 731
MnlI	CCTC	6 cut(s)	34, 54, 104, 279, 384, 639
MseI	TTAA	4 cut(s)	117, 227, 242, 402
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	117, 227, 242, 402
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	4 cut(s)	14, 43, 150, 603
SfaNI	GCATC	7 cut(s)	38, 145, 257, 299, 473, 554, 728
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	6 cut(s)	114, 183, 224, 504, 569, 731
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	332
TaqI	TCGA	3 cut(s)	97, 376, 631
TasI	AATT	6 cut(s)	114, 183, 224, 504, 569, 731
Tru1I	TTAA	4 cut(s)	117, 227, 242, 402
Tru9I	TTAA	4 cut(s)	117, 227, 242, 402
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	423, 480, 678, 768
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	2 cut(s)	569, 731
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.