Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018645

Physical Location & Seq

Genomic Coordinates Reverse (-)

40606463 .. 40609956

Gene Structure 3494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCATGATGTCATCCGGGATACAGCCATTCAAATTGCATCCAAAGGTGAGCGCACATTTTTCGTAGAAGCTGGCTGTCGTTTGGAGAATTGGCCACTTCAATTGCATGAAGACCACTCTGCAATTTCACTCATGAAGAACAACATTCGCAAGCTACCTGAAGAGCTGAACATAGCTGACATTTCCATACTGAAATATTTTAAGAAGCTTGAGATTCTCAGTATGAAAGAATGCCCTCTAAAGGAATTGTCAACAGAAATAGGAAATTTGACCAATTTAAGGGTGTTGGATGTTAGTGGTGCAGTCGGTGGAGGTATAATCAGAATTCCATCTGGGGTGATATCAAAATTGCCTGAGATTAAATATGGAAGTGCACTTGACGGTGAATCTGAGAGTGCATTTGACATTGACAGTGAATCTGACAGGGCACTACTGAGTGAATTAATCAGTGCAGCGTTAAGTGCATCTCAGAGTTTATCCATCCGAGACCGTGAATCTGGGAGGGCATCGTCAAGTGCATTTGACAGTGAACTTATCAGTGTATTGCCAAGGGCATTTCAGATTGCCAAGTGCATTGAAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

337

Amino Acids

36.55

Weight (kDa)

4.65

Isoelectric Point (pI)

70.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018645)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002844 RLG00000002846 RLG00000002847 RLG00000002848 RLG00000002849 RLG00000002850 RLG00000002851 RLG00000002852 RLG00000002853 RLG00000002854

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	4 cut(s)	265, 324, 785, 947
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	241, 279
AgsI	TTSAA	4 cut(s)	32, 101, 578, 976
AluBI	AGCT	6 cut(s)	71, 154, 166, 176, 208, 817
AluI	AGCT	6 cut(s)	71, 154, 166, 176, 208, 817
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	3 cut(s)	480, 654, 909
Alw44I	GTGCAC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	4 cut(s)	265, 324, 785, 947
AseI	ATTAAT	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	59, 349, 395
BaeGI	GKGCMC	2 cut(s)	376, 430
BalI	TGGCCA	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	5 cut(s)	337, 488, 662, 743, 917
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciVI	GTATCC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	480, 654, 909
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	6 cut(s)	47, 473, 515, 689, 770, 944
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 279
BseDI	CCNNGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	241, 279
BseSI	GKGCMC	2 cut(s)	376, 430
BseXI	GCAGC	1 cut(s)	464
BsgI	GTGCAG	2 cut(s)	321, 471
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	241, 279
BsmAI	GTCTC	3 cut(s)	480, 654, 909
BsmI	GAATGC	2 cut(s)	236, 809
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	376, 430
BspANI	GGCC	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	156, 573
BstC8I	GCNNGC	3 cut(s)	73, 152, 819
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	3 cut(s)	480, 654, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	2 cut(s)	376, 430
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	73, 152, 819
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	1 cut(s)	54
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	3 cut(s)	5, 107, 133
CviJI	RGCY	9 cut(s)	26, 71, 75, 94, 154, 166, 176, 208, 817
CviKI_1	RGCY	9 cut(s)	26, 71, 75, 94, 154, 166, 176, 208, 817
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	156, 573
EarI	CTCTTC	2 cut(s)	156, 573
Eco130I	CCWWGG	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	3 cut(s)	8, 110, 136
FaiI	YATR	9 cut(s)	6, 108, 134, 173, 188, 224, 317, 366, 953
FatI	CATG	3 cut(s)	4, 106, 132
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	9 cut(s)	25, 302, 467, 637, 641, 722, 892, 896, 982
Fsp4HI	GCNGC	1 cut(s)	453
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	16
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	8, 110, 136
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	206
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	3 cut(s)	59, 349, 395
Hpy166II	GTNNAC	3 cut(s)	252, 374, 530
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	3 cut(s)	252, 374, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	8, 110, 136
HspAI	GCGC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	8 cut(s)	29, 57, 171, 318, 366, 409, 483, 827
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	6 cut(s)	47, 473, 515, 689, 770, 944
MboII	GAAGA	6 cut(s)	122, 148, 173, 577, 590, 832
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	376, 430
MlsI	TGGCCA	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	246, 305, 495, 600, 855
Mox20I	TGGCCA	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	5 cut(s)	201, 278, 360, 443, 458
Msp20I	TGGCCA	1 cut(s)	94
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	101
Mva1269I	GAATGC	2 cut(s)	236, 809
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	17
NlaIII	CATG	3 cut(s)	8, 110, 136
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	2 cut(s)	236, 809
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	201, 278, 360, 443, 458
SatI	GCNGC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	376, 430
SetI	ASST	9 cut(s)	49, 73, 156, 160, 168, 178, 210, 316, 819
SfaNI	GCATC	6 cut(s)	47, 473, 515, 689, 770, 944
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SspI	AATATT	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	548
TaqI	TCGA	2 cut(s)	592, 847
Tru1I	TTAA	5 cut(s)	201, 278, 360, 443, 458
Tru9I	TTAA	5 cut(s)	201, 278, 360, 443, 458
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	7 cut(s)	123, 149, 239, 639, 696, 894, 984
VneI	GTGCAC	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	443
XapI	RAATTY	4 cut(s)	265, 324, 785, 947
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.