RLG00000002854

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
40766749 .. 40769963
3215 bp
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UTR
Exon/CDS
Intron
RLM00000002854

Sequence Viewer

Length: 906 bp
ATGTTAGCGGCGAGGGTCCAGGCGGTGGAGGTATCATCAGAATTCCATCTGGGTGAATCTGACAAGGCACTTCTGGGTGAATTAATCAGTGTATCGCCAAGTGCAATTCAGAGTTTATCCATCCGAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTAACAGTGAATTTATCAGTGCATTGTTTCGGGCATTTCATATTGCCAAGTGCATTAAAGAGTTCTTCCCTGGAGACAGTGAATCTAAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTCGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCAGGTGCATTTCAGCTTGCCAAGTGCTTTACAGAGTTCTTCCGTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTCAATCTGAGAGTGCATCGTCAAGTGCATTTGACATTGATTCATTGTCAAGTGCAATTCAGAGTTTATCCATCCAAGACCGTGAATCTGAGAGTGCATCGTCAAGTGCATTTGACAGTGAATTTATCAGTGCATTGTCGGGTGCATTCCAGCTTGCCAAGTGCTTTACAGGGTTCTTCCCTCGACACAGTGAATCTGAGAGTGCATTTGACAGTGAATCTATCAGTGCATTTCAGAGTTCATCCATCCGAGACAGTGAATCTGAGATTGCATCTGACAGTGAATTTATGAGTGGATTGGAAAGTGGATTGAAAAGGGCATTTCAGAGTTCATCCAGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

32.21

Weight (kDa)

4.4

Isoelectric Point (pI)

83.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 487
AciI CCGC 2 cut(s) 8, 23
AcsI RAATTY 5 cut(s) 41, 170, 425, 680, 842
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 871
AjnI CCWGG 2 cut(s) 18, 229
AluBI AGCT 2 cut(s) 457, 712
AluI AGCT 2 cut(s) 457, 712
Alw26I GTCTC 5 cut(s) 120, 228, 294, 549, 804
ApoI RAATTY 5 cut(s) 41, 170, 425, 680, 842
AseI ATTAAT 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 65, 89
AvaII GGWCC 1 cut(s) 16
BccI CCATC 7 cut(s) 54, 128, 302, 383, 557, 638, 812
BciT130I CCWGG 2 cut(s) 20, 231
BcoDI GTCTC 5 cut(s) 120, 228, 294, 549, 804
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 20, 231
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 20, 231
BmsI GCATC 6 cut(s) 155, 329, 410, 584, 665, 839
BpmI CTGGAG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 20, 231
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 8 cut(s) 129, 303, 384, 492, 558, 639, 747, 813
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 5 cut(s) 120, 228, 294, 549, 804
BsmI GAATGC 2 cut(s) 332, 704
Bso31I GGTCTC 1 cut(s) 120
BspACI CCGC 2 cut(s) 8, 23
BspCNI CTCAG 8 cut(s) 130, 304, 385, 493, 559, 640, 748, 814
BspLI GGNNCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 20, 231
BstC8I GCNNGC 2 cut(s) 459, 714
BstDEI CTNAG 9 cut(s) 138, 246, 312, 393, 501, 567, 648, 756, 822
BstMAI GTCTC 5 cut(s) 120, 228, 294, 549, 804
BstNI CCWGG 2 cut(s) 20, 231
BstSCI CCNGG 2 cut(s) 18, 229
Cac8I GCNNGC 2 cut(s) 459, 714
Cfr13I GGNCC 1 cut(s) 16
CviJI RGCY 2 cut(s) 457, 712
CviKI_1 RGCY 2 cut(s) 457, 712
DdeI CTNAG 9 cut(s) 138, 246, 312, 393, 501, 567, 648, 756, 822
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 18, 229
FaiI YATR 2 cut(s) 201, 848
FblI GTMKAC 1 cut(s) 487
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 488
HindII GTYRAC 1 cut(s) 488
HphI GGTGA 2 cut(s) 65, 89
Hpy166II GTNNAC 1 cut(s) 488
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 1 cut(s) 489
HpyF3I CTNAG 9 cut(s) 138, 246, 312, 393, 501, 567, 648, 756, 822
LpnPI CCDG 9 cut(s) 5, 32, 35, 59, 216, 243, 429, 714, 722
LweI GCATC 6 cut(s) 155, 329, 410, 584, 665, 839
MboII GAAGA 3 cut(s) 217, 472, 727
MluCI AATT 9 cut(s) 41, 80, 105, 170, 360, 425, 615, 680, 842
MnlI CCTC 3 cut(s) 6, 22, 750
MseI TTAA 3 cut(s) 83, 162, 216
MslI CAYNNNNRTG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 20, 231
Mva1269I GAATGC 2 cut(s) 332, 704
MvaI CCWGG 2 cut(s) 20, 231
NlaIV GGNNCC 1 cut(s) 17
PctI GAATGC 2 cut(s) 332, 704
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 18, 229
PspGI CCWGG 2 cut(s) 18, 229
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 51
SalI GTCGAC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 83, 162, 216
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 20, 231
SetI ASST 4 cut(s) 33, 448, 459, 714
SfaNI GCATC 6 cut(s) 155, 329, 410, 584, 665, 839
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 9 cut(s) 41, 80, 105, 170, 360, 425, 615, 680, 842
SsiI CCGC 2 cut(s) 8, 23
StyD4I CCNGG 2 cut(s) 18, 229
TaqI TCGA 3 cut(s) 336, 487, 742
TasI AATT 9 cut(s) 41, 80, 105, 170, 360, 425, 615, 680, 842
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 83, 162, 216
Tru9I TTAA 3 cut(s) 83, 162, 216
TspDTI ATGAA 7 cut(s) 188, 279, 336, 534, 591, 789, 879
TspGWI ACGGA 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 5 cut(s) 41, 170, 425, 680, 842
XmiI GTMKAC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.