RLG00000003499
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018570
Physical Location & Seq
Forward (+)
49278388 .. 49278960
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003499

Sequence Viewer

Length: 573 bp
ATGATAGCACCCAATTTTTTTGATTCGGCAACCAAGACTTGGAACTCTTCATCATCACCGTGTGATTGGCTAGAGATTAGTTGCAACCCCAGCACGGTCACTGAGTTCGATCTTACTCTGAGAAAAAGACCTCATGGAGAAAATTATGACCTTCTGAACGTCACCGTCCTCAATCTCGCTTGGAATTACATTCCCAATGAGTTTCTGACGTCTCTCTACAACTACTCCAAGCTCCAATTCCTCGATCTCTCTCAACACCACTTCGTCGGTTCAATTCTTGGCAATATTGATAGGATTTCGTCGTCTCTACAATACTTAGACCTCGATAGGAACAACTTCTCCGACCACATTCTAGCAACTATCGGAAACCTAACAGAGCTTAATGCCTTGCAGCTTTATTCAAATATGTTCAACATAACATTTTCGAGCGAGATCAGCAACTTGTCTAATCTCGAGATCTTAGACATGTCCTTCAATGGTGATCTAATTGCTACACCAATCCCACCGGAGTTCAGAAAGTTGGAGAAGCTGAAGAAATTCCTAATAAGGCGATCGAAATTTGTGAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

191

Amino Acids

21.88

Weight (kDa)

5.52

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 56 - 182 5.5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018570)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0111621
rosa_laevigata RLG00000003499
rosa_multiflora Rmu_sc0000127.1_g000005
rosa_roxburghii Rroxscaffold_5G00379740 Rroxscaffold_6G00390630
rosa_samantha Rh2AG362300 Rh2CG243900 Rh5AG250400 Rh5DG449100 Rh6CG246200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 39
AcsI RAATTY 2 cut(s) 536, 557
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 39, 94
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 273, 402, 412, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 4 cut(s) 232, 379, 394, 529
AluI AGCT 4 cut(s) 232, 379, 394, 529
Alw26I GTCTC 2 cut(s) 216, 309
Ama87I CYCGRG 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 2 cut(s) 536, 557
Asp700I GAANNNNTTC 2 cut(s) 335, 536
AsuHPI GGTGA 3 cut(s) 48, 154, 491
AvaI CYCGRG 1 cut(s) 452
BbvI GCAGC 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 216, 309
BfaI CTAG 2 cut(s) 71, 353
BglII AGATCT 1 cut(s) 456
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 94
BseLI CCNNNNNNNGG 2 cut(s) 39, 94
BseMII CTCAG 2 cut(s) 93, 110
BseXI GCAGC 1 cut(s) 403
BseYI CCCAGC 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 554
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 39, 94
BsmAI GTCTC 2 cut(s) 216, 309
BsmBI CGTCTC 2 cut(s) 216, 309
BsoBI CYCGRG 1 cut(s) 452
Bsp143I GATC 6 cut(s) 109, 244, 432, 456, 481, 551
BspCNI CTCAG 2 cut(s) 94, 111
BssMI GATC 6 cut(s) 109, 244, 432, 456, 481, 551
BssNI GRCGYC 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 60, 97, 166
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 102, 119, 316, 460
BstKTI GATC 6 cut(s) 112, 247, 435, 459, 484, 554
BstMAI GTCTC 2 cut(s) 216, 309
BstMBI GATC 6 cut(s) 109, 244, 432, 456, 481, 551
BstMCI CGRYCG 1 cut(s) 554
BstMWI GCNNNNNNNGC 2 cut(s) 90, 435
BstNSI RCATGY 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 99
CviAII CATG 2 cut(s) 134, 466
CviJI RGCY 5 cut(s) 70, 232, 379, 394, 529
CviKI_1 RGCY 5 cut(s) 70, 232, 379, 394, 529
DdeI CTNAG 4 cut(s) 102, 119, 316, 460
DpnI GATC 6 cut(s) 111, 246, 434, 458, 483, 553
DpnII GATC 6 cut(s) 109, 244, 432, 456, 481, 551
DraIII CACNNNGTG 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 452
Esp3I CGTCTC 2 cut(s) 216, 309
FaeI CATG 2 cut(s) 137, 469
FaiI YATR 5 cut(s) 135, 147, 407, 416, 467
FatI CATG 2 cut(s) 133, 465
Fnu4HI GCNGC 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 2 cut(s) 71, 353
GluI GCNGC 1 cut(s) 392
GsaI CCCAGC 1 cut(s) 93
HapII CCGG 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 2 cut(s) 137, 469
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 506
HphI GGTGA 3 cut(s) 48, 154, 491
Hpy188I TCNGA 6 cut(s) 120, 156, 207, 343, 365, 515
Hpy188III TCNNGA 2 cut(s) 452, 454
Hpy99I CGWCG 2 cut(s) 269, 304
HpyAV CCTTC 2 cut(s) 161, 481
HpyCH4III ACNGT 3 cut(s) 60, 97, 166
HpyCH4IV ACGT 2 cut(s) 159, 209
HpyCH4V TGCA 2 cut(s) 84, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 435
HpyF3I CTNAG 4 cut(s) 102, 119, 316, 460
HpySE526I ACGT 2 cut(s) 159, 209
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 137, 469
Kzo9I GATC 6 cut(s) 109, 244, 432, 456, 481, 551
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 103, 519
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 2 cut(s) 71, 353
MaeII ACGT 2 cut(s) 159, 209
MaeIII GTNAC 2 cut(s) 97, 160
MalI GATC 6 cut(s) 111, 246, 434, 458, 483, 553
MboI GATC 6 cut(s) 109, 244, 432, 456, 481, 551
MboII GAAGA 2 cut(s) 39, 544
MflI RGATCY 1 cut(s) 456
MluCI AATT 8 cut(s) 13, 142, 184, 236, 273, 486, 536, 557
MmeI TCCRAC 2 cut(s) 366, 501
MnlI CCTC 4 cut(s) 141, 179, 251, 332
MroXI GAANNNNTTC 2 cut(s) 335, 536
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 1 cut(s) 506
MwoI GCNNNNNNNGC 2 cut(s) 90, 435
NdeII GATC 6 cut(s) 109, 244, 432, 456, 481, 551
NlaIII CATG 2 cut(s) 137, 469
NmuCI GTSAC 2 cut(s) 97, 160
NspI RCATGY 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 452
PciI ACATGT 1 cut(s) 465
PdmI GAANNNNTTC 2 cut(s) 335, 536
PfeI GAWTC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 393
Ple19I CGATCG 1 cut(s) 554
PscI ACATGT 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 456
PvuI CGATCG 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 6 cut(s) 109, 244, 432, 456, 481, 551
Sfr274I CTCGAG 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 8 cut(s) 13, 142, 184, 236, 273, 486, 536, 557
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 71, 353
TaaI ACNGT 3 cut(s) 60, 97, 166
TaiI ACGT 2 cut(s) 162, 212
TaqI TCGA 6 cut(s) 108, 243, 324, 425, 453, 554
TasI AATT 8 cut(s) 13, 142, 184, 236, 273, 486, 536, 557
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 2 cut(s) 97, 160
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 2 cut(s) 97, 160
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 2 cut(s) 536, 557
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 452
XmnI GAANNNNTTC 2 cut(s) 335, 536
XspI CTAG 2 cut(s) 71, 353
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.