Rroxscaffold_6G00390630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018570
Physical Location & Seq
Reverse (-)
6020729 .. 6031930
11202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390630.1

Sequence Viewer

Length: 513 bp
ATGAGTTTCTATGGAGAACTTACGAATAGGGCTGTGGAGACTGATATGCCGGTCATGGTTCAGGTCGAGACTCAAAGGCACCTTCCTAGTCGCGATGAGGATGATAATATTGATGAAATGAGCAAGAGAGGATTAGAAAGGATTGGAATGTCTTACCAGACGAAGGGGAGTAAGCTGGTACCCATCACGGCGGCTCTCAGTGGTTCACGCGCCAGCGGTGGCGCGTATGGTGGCGTCTGCCGGAGTTGGAGGTCAAAACTAGGGGGCTCTGGTCGATTGCATGTTGGCAAGGCCGGGAAGGTGGCTTCCGGGGAGGTATTGGCCGCTTTCGACTACCGTGGCGTAGCTTGGATATCGGGCTACGGGATACACGTCTCGGTCGGGCCCCACCATGACATGCATGAGCGGGAAGCTCTTGAGCAGAATCTCGGGGTGTCGAAAAGGCATGAGCGGAAGCTTTGTGGATGCAGTAAAGGCGGGAGCGGTGAGCTCATGGATGCCACGAAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.31

Weight (kDa)

8.79

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018570)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0111621
rosa_laevigata RLG00000003499
rosa_multiflora Rmu_sc0000127.1_g000005
rosa_roxburghii Rroxscaffold_5G00379740 Rroxscaffold_6G00390630
rosa_samantha Rh2AG362300 Rh2CG243900 Rh5AG250400 Rh5DG449100 Rh6CG246200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 2 cut(s) 78, 178
AccBSI CCGCTC 3 cut(s) 406, 451, 483
AccII CGCG 3 cut(s) 93, 210, 224
AciI CCGC 7 cut(s) 191, 216, 324, 406, 451, 477, 483
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 370
AjiI CACGTC 1 cut(s) 373
AluBI AGCT 5 cut(s) 175, 347, 413, 457, 490
AluI AGCT 5 cut(s) 175, 347, 413, 457, 490
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 32, 62, 379
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 291, 321, 383
ApaI GGGCCC 1 cut(s) 387
Asp718I GGTACC 1 cut(s) 178
AspLEI GCGC 2 cut(s) 212, 224
AspS9I GGNCC 2 cut(s) 383, 384
AsuC2I CCSGG 2 cut(s) 295, 310
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 387
BanI GGYRCC 2 cut(s) 78, 178
BanII GRGCYC 3 cut(s) 269, 387, 492
Bbv12I GWGCWC 1 cut(s) 492
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 204
BciVI GTATCC 1 cut(s) 360
BcnI CCSGG 2 cut(s) 295, 310
BcoDI GTCTC 3 cut(s) 32, 62, 379
BfaI CTAG 2 cut(s) 87, 260
BfuI GTATCC 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 2 cut(s) 192, 324
BlsI GCNGC 2 cut(s) 193, 325
Bme1390I CCNGG 2 cut(s) 295, 310
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 383, 384
BmiI GGNNCC 4 cut(s) 80, 180, 385, 386
BmrFI CCNGG 2 cut(s) 295, 310
BmsI GCATC 2 cut(s) 455, 487
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 2 cut(s) 295, 310
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 309, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 309, 337
BseGI GGATG 3 cut(s) 106, 470, 502
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 387
Bsh1236I CGCG 3 cut(s) 93, 210, 224
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 3 cut(s) 293, 323, 385
BshNI GGYRCC 2 cut(s) 78, 178
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 4 cut(s) 50, 241, 294, 309
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 3 cut(s) 32, 62, 379
BsmBI CGTCTC 1 cut(s) 379
BsnI GGCC 3 cut(s) 293, 323, 385
BsoBI CYCGRG 1 cut(s) 428
Bsp120I GGGCCC 1 cut(s) 383
Bsp1286I GDGCHC 3 cut(s) 269, 387, 492
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 7 cut(s) 191, 216, 324, 406, 451, 477, 483
BspANI GGCC 3 cut(s) 293, 323, 385
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 3 cut(s) 93, 210, 224
BspLI GGNNCC 4 cut(s) 80, 180, 385, 386
BspT107I GGYRCC 2 cut(s) 78, 178
BsrBI CCGCTC 3 cut(s) 406, 451, 483
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 309, 337
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 3 cut(s) 106, 470, 502
BstFNI CGCG 3 cut(s) 93, 210, 224
BstHHI GCGC 2 cut(s) 212, 224
BstMAI GTCTC 3 cut(s) 32, 62, 379
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 2 cut(s) 474, 506
BstNSI RCATGY 2 cut(s) 284, 400
BstSCI CCNGG 2 cut(s) 293, 308
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 3 cut(s) 93, 210, 224
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 3 cut(s) 293, 323, 385
BtgI CCRYGG 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 3 cut(s) 106, 470, 502
BtsIMutI CAGTG 1 cut(s) 205
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 2 cut(s) 212, 224
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 383, 384
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 179
CviAII CATG 7 cut(s) 55, 281, 392, 397, 401, 446, 493
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 490
Eco24I GRGCYC 3 cut(s) 269, 387, 492
Eco32I GATATC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 384
EcoRV GATATC 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 3 cut(s) 269, 387, 492
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 7 cut(s) 58, 284, 395, 400, 404, 449, 496
FatI CATG 7 cut(s) 54, 280, 391, 396, 400, 445, 492
FauI CCCGC 2 cut(s) 399, 470
Fnu4HI GCNGC 2 cut(s) 192, 324
FokI GGATG 3 cut(s) 113, 477, 509
FriOI GRGCYC 3 cut(s) 269, 387, 492
Fsp4HI GCNGC 2 cut(s) 192, 324
FspBI CTAG 2 cut(s) 87, 260
GlaI GCGC 2 cut(s) 211, 223
GluI GCNGC 2 cut(s) 192, 324
HaeIII GGCC 3 cut(s) 293, 323, 385
HapII CCGG 4 cut(s) 50, 241, 294, 309
HgaI GACGC 1 cut(s) 223
HhaI GCGC 2 cut(s) 212, 224
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 7 cut(s) 58, 284, 395, 400, 404, 449, 496
Hin6I GCGC 2 cut(s) 210, 222
HinP1I GCGC 2 cut(s) 210, 222
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 70, 424
HpaII CCGG 4 cut(s) 50, 241, 294, 309
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 67, 92, 416
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 92, 157, 292, 499
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 280, 400, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 506
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 7 cut(s) 58, 284, 395, 400, 404, 449, 496
HspAI GCGC 2 cut(s) 210, 222
KpnI GGTACC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 9 cut(s) 47, 63, 161, 170, 226, 254, 255, 307, 322
LweI GCATC 2 cut(s) 455, 487
MaeI CTAG 2 cut(s) 87, 260
MaeII ACGT 1 cut(s) 372
MbiI CCGCTC 3 cut(s) 406, 451, 483
MhlI GDGCHC 3 cut(s) 269, 387, 492
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 4 cut(s) 91, 122, 243, 307
Mph1103I ATGCAT 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 4 cut(s) 50, 241, 294, 309
MspR9I CCNGG 2 cut(s) 295, 310
MvnI CGCG 3 cut(s) 93, 210, 224
MwoI GCNNNNNNNGC 2 cut(s) 474, 506
NciI CCSGG 2 cut(s) 295, 310
NlaIII CATG 7 cut(s) 58, 284, 395, 400, 404, 449, 496
NlaIV GGNNCC 4 cut(s) 80, 180, 385, 386
NruI TCGCGA 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 2 cut(s) 284, 400
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 2 cut(s) 193, 325
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 492
PspN4I GGNNCC 4 cut(s) 80, 180, 385, 386
PspOMI GGGCCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 383, 384
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SacI GAGCTC 1 cut(s) 492
SatI GCNGC 2 cut(s) 192, 324
Sau96I GGNCC 2 cut(s) 383, 384
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 295, 310
SduI GDGCHC 3 cut(s) 269, 387, 492
SfaNI GCATC 2 cut(s) 455, 487
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SsiI CCGC 7 cut(s) 191, 216, 324, 406, 451, 477, 483
SspI AATATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 87, 260
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 293, 308
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 375
TaqI TCGA 4 cut(s) 66, 274, 330, 437
TaqII GACCGA 1 cut(s) 367
TauI GCSGC 2 cut(s) 194, 326
TfiI GAWTC 1 cut(s) 424
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 205
XceI RCATGY 2 cut(s) 284, 400
XspI CTAG 2 cut(s) 87, 260
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.