Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018570

Physical Location & Seq

Genomic Coordinates Reverse (-)

31876270 .. 31915260

Gene Structure 38991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACGGCTAGATGGTGGAGTTGCTGGAAAGCCTGTTTGCACATCGAAACAATTATGTATCCAGTTGACTGTATTGGTTTAACAGGGATTCTGACAAGACAATTTACGAGCGTCTACATAAGGAATTTGAAGCTGCACGGGCTTTACAAACTCAAGGTACTTGTTTTATCTGGTCATGATCATGATCAGTGTGATGTTGTCCACAAGCCAAAATATGGGCTTGTGAAGGAGCAAATGTCGGTTTACCAAGTTTCTGAGCAATATCTTAGAAAGCTAAGAACAGCAGGCCTAATTTTTGGGTGTAATTCTGAGTTTTATTGTAGCTTTCTGTATAGGATTATCATCTTTATCATTTTTAGGTATGCTAAAGATCTTCCTATTCCTGCATATATGCATATGAAGTATTTTCCTCCATTTAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

141

Amino Acids

16.71

Weight (kDa)

9.33

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018570)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111621
rosa_laevigata	RLG00000003499
rosa_multiflora	Rmu_sc0000127.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379740 Rroxscaffold_6G00390630
rosa_samantha	Rh2AG362300 Rh2CG243900 Rh5AG250400 Rh5DG449100 Rh6CG246200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	133, 274, 324
AluI	AGCT	3 cut(s)	133, 274, 324
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	21
BciVI	GTATCC	1 cut(s)	69
BclI	TGATCA	2 cut(s)	178, 184
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	137
BsaBI	GATNNNNATC	2 cut(s)	183, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	2 cut(s)	183, 341
BseJI	GATNNNNATC	2 cut(s)	183, 341
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	246, 300
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	215
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	178, 184, 370
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	247, 301
BspHI	TCATGA	2 cut(s)	175, 181
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	178, 184, 370
Bst4CI	ACNGT	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	255, 266, 275, 309
BstKTI	GATC	3 cut(s)	181, 187, 373
BstMBI	GATC	3 cut(s)	178, 184, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	286
CciI	TCATGA	2 cut(s)	175, 181
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	176, 182
CviJI	RGCY	9 cut(s)	8, 32, 133, 142, 208, 220, 274, 288, 324
CviKI_1	RGCY	9 cut(s)	8, 32, 133, 142, 208, 220, 274, 288, 324
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	4 cut(s)	255, 266, 275, 309
DpnI	GATC	3 cut(s)	180, 186, 372
DpnII	GATC	3 cut(s)	178, 184, 370
Eco147I	AGGCCT	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	396
FaeI	CATG	2 cut(s)	179, 185
FatI	CATG	2 cut(s)	175, 181
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	2 cut(s)	178, 184
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	179, 185
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	4 cut(s)	67, 115, 202, 244
Hpy188I	TCNGA	3 cut(s)	93, 256, 310
Hpy188III	TCNNGA	2 cut(s)	176, 182
Hpy8I	GTNNAC	4 cut(s)	67, 115, 202, 244
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	40, 136, 386, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	4 cut(s)	255, 266, 275, 309
Hsp92II	CATG	2 cut(s)	179, 185
Ksp22I	TGATCA	2 cut(s)	178, 184
Kzo9I	GATC	3 cut(s)	178, 184, 370
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	10, 46, 69, 75, 156, 270, 396
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	9
MalI	GATC	3 cut(s)	180, 186, 372
MboI	GATC	3 cut(s)	178, 184, 370
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	5 cut(s)	51, 101, 124, 291, 304
MnlI	CCTC	1 cut(s)	420
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	80, 417
MslI	CAYNNNNRTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	178, 184, 370
NlaIII	CATG	2 cut(s)	179, 185
NsiI	ATGCAT	1 cut(s)	396
PagI	TCATGA	2 cut(s)	175, 181
PceI	AGGCCT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	80, 417
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	3 cut(s)	178, 184, 370
SetI	ASST	6 cut(s)	135, 159, 276, 326, 362, 423
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	51, 101, 124, 291, 304
SseBI	AGGCCT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	51, 101, 124, 291, 304
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	80, 417
Tru9I	TTAA	2 cut(s)	80, 417
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.