RLG00000003828

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007415
Physical Location & Seq
Forward (+)
53217100 .. 53229034
11935 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003828

Sequence Viewer

Length: 3414 bp
ATGGAGGAGCAACACTCTCTCTTCCACCGCTACCGCCGCGATCGCCGCAAGCTTCTGGAGTTTCTCTTGTCTTCTTCGGCGTCCTCCTCGTCGCTTTCTCACATCAATTTCGATACTCTCAGCGCCGATTATGTCATCAATCGAGTCAAATCCGGTGGGGTGGTGGATATATCTGAAGCAACCAAGACTTACTTCCGTGAATCTTCGTATCCTCCAATGACTCATTCAAAATTAGGGGATTCCTTTCTTCTACATACTGATCCAGATGATTCTGGATCACCTCCTAGGCGTGCGCCTCCATCAGTTCCATCTAGAAAGCCGGGTTCGTTGAAAGTTGAGAACATTGGCAGGAATGGTGACGACCTTGGTTTTAAATATAGAGCCTCACCCAGCACACGTCCAAGGCCTATTGAAAACTTTAAAATTGTTTCATTGGGATTGCCTACTCTGAAAACAGGATTATCTGATGATGACTTGCGGGAGTCAGCATACGAAATATTGCTTGCATCTATGGCAACATCTGGGATTGTAATCTGTTCTGTTGAAGATCAAAGGAAACATAGGCCTTCCAGATTGCTGTCAGGATTAAAGAGTAGAAAGGATAAACCAAACGTGCAGTCGCAGCCTCTTGATAAAAACTTACGGCTGATCCGCACCATCCGTGTGCAGATGCAGATTTCTGAAGCAATGGATGAGTGCACTAGACAGAAGATGATGATGTTATCGCCAGGGAGAACGCGGGTGCAGATTGATATTCCTCAAATTGTGTTGGGGCTTTTGAATTTCACTTTTAAGTCTGATTTTTCAAATGAAAAGTCTTATATGCAATGGAAGAATAGACAGGCAAGTATCTTAGAAGAACTTCTCTGCTTTTCTCCTAATCTTGTGGCGCATGATCATCTAACTATTAAGCGTTCTCTTGCTATGATTAGAAATGCAAAGGAGTGGGACTTTATGTCTTCTTCTGGAAAGGCTGAGGTTATATCAGTTATCAAACAGGCAGCTTTAACGCTGTCATCTCTTCCAGGACGCTTTGATCTCCAAAGTGAGACCTATTATTGGACTTCTGCATATCACTTGAATATTAGGCTTTATGAGAAACTACTTCTTGGTGTATTTGATGTTCTTGATGAAAGCCAGCTGATAGAGGAAGCTGATGAGTTCCTGATGCTCTTGAGATTGACATGGTCTACTTTAGGCATCACTCAAAAAATGCATGATGCAATATATATGTGGGTCCTTTTCCAACAGTTTGTTGGAACAGATGAGGCTCTGCTATTAGAATATGCAACGGTGGAGTTGCAGGAGCTTATATCAGCTAAAGTTGATGATGAGAATGTAAGGCTATATATGAATAGCCTGCTATGTTCAATCCACTGCAACGCCATCGAGATAAAGTTAAGTTTGGTTGATGCAGTCTTCTACTCTTTAAGCATTTGGTGTGAGGGTAAACTACAAGATTATCATCTGCATTTCAGTCAGAAACACAGTCACTTAAAGAGGGTGATGAGCTTAGTGTCAGCAGTTGGCGTTCTTAATTTCGGTGATAGTGGTCATATGAAGTTGAGGAGGTTCAATCTCAATACGGATGCTGCTAAAATACTTGAGTCATATGTGAAAAGGTCAATTGAAGCTGCATACAGGCAGGTAGCAAGTAACATAGATCACTTATCAGAAGTGGAAAAGAAACATCCTTTGTGCGTGCTTGCAAATGAACTGAGGTTGATTGCTGAGAGAGAACTAAATGTGTTCTACCCGGAACTATGCAAATGGTGCCCTAATTCTGGGATGATTGCAGCTATGATGTTGCACCAGATTTATTGGGAAAGGCTGAAACCCTTTCTGGATGGAGTGTCATCTCTTTCTGAAGATGTTAAAGCCGTGCTTCCAGCTGCTGATTTGTTGGATCAAGTCGTAACTCAGCTTTACAATACTGGTAATGGAGAAAATTGTGAAGATCTGCACCATTATCCGATTGGTGAAGTTGCTAAACCTATCATTCTTGATTGGGTGATTGCTCAGCATGAACGCATCTTGGAATGGACTGGACGTGCTTTTGATCTTGAGAAGTGGGAGCCTTTGTCATCTCAGCAGAGACAGGCAGCATCGATAGTTGAAGTGTTTAGAATTATAGAGGAGACTGTGGATCAATTATTTGGTTTTCGTCTCCCTATGGATATCACTCATTTGCAAGCTCTGTTATCTGTTGTCTTTCATACCTTGGATGCCTATTTGCTGAAATTGCTCGACCAGATAGTTGAGAAAAATTACTTATATCCATCAGCTCCTCCATTGACTCGCTACAAGGAGACGACTATTCCGGTGCTGAAAAAGAAGTTTCTTGAGTGTATGCCTTTGGATGACAATGTGTATGACAAGTTGAATACTTTGACAATACCCAAACTCTGTGTCCGAATGAACACGTTGAAATATATTCAGAAACAAATTGACATACTAGAAGATGGTATCAGAAAATCTTGGGCTGTCGTCAGACAATCAATTGATAAAATATGTGCCAGAGAACAGCGTTTGGGAACTTCAACATGCAATGAACAAATTGATGAGCTCTTCTGCACCACCTTTGACATCATCAGGGATAATGCAGCAAATGCCATCAGTAAAATTTGTGACTTTACTGGTGCAAAAGCCGTGTTCTGGGATCTCAGACATGCATTCCTCTTCTGTTTATATTGTGGAAGTGTTGAAGCTTCTCGTTTGGATGGTGTTCTCACACGCATTGATACTGTCCTTGGCCATGTATGCAGTTATATTGATGATTCTCTTAGAGACGCTGTGGTTTTAAGCATCTGTCAAGCATCACTGGAAGGCTTTGCGTGGGTTTTGCTTGATGGTGGGCCTTCACGTGCATTTTGTGATTCAGATATTGTACTAATAGAGGATGACCTTTCTGCACTAAAGGAATTTTTCGTAGCTGATGGTGAAGGCCTTCCCCGATCAGTAGTGGAGCAAGAAGCAAAGTTTCCTGAGGAAATACTGAACTTGTATTCACAGCAGACTGAAACTATCATCCAAAAGCTGATGGCTGCAAGTGAACAAATATCATTGGGGCTAGATTCACATGATCATAACTATATGCGATTAAATAATGCCCACACTTTTGTGCGCGTGTTATGCCACAAAAAAGATAGAGAAGCCTCTAAATTCTTGAAAAGGCAATATCAGCTCCCCATGTCTTCAGAATATGAAGACACTCCATCAACAGATCCAACTTCCCAATCACCTATCAGATCAGATCTATCAAAGCGAAGCATGTCAGATCTAGCAAAGCGAAGCACGTCAGATCTAGCAAAGCGAAGCACGTCATTTCGTTGGAATAATACGCATAGTACCTTTACCTCATTTAAGAAGAAACTTCAAGAAGCAACATCTGAATTCAGGAATGTGGCGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1138

Amino Acids

129.68

Weight (kDa)

6.17

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 666 - 1065 1.2e-101 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1636
AccB1I GGYRCC 1 cut(s) 1773
AccI GTMKAC 1 cut(s) 1190
AccII CGCG 3 cut(s) 39, 739, 3126
AciI CCGC 7 cut(s) 28, 34, 37, 46, 478, 652, 739
AclWI GGATC 7 cut(s) 254, 283, 643, 1914, 2154, 2667, 3218
AcoI YGGCCR 1 cut(s) 2752
AcsI RAATTY 5 cut(s) 781, 2622, 2921, 3161, 3392
AcuI CTGAAG 4 cut(s) 195, 702, 1887, 3180
AcvI CACGTG 1 cut(s) 2864
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 2 cut(s) 2889, 3349
AfiI CCNNNNNNNGG 3 cut(s) 1059, 1784, 2655
AflIII ACRYGT 2 cut(s) 395, 2421
AhdI GACNNNNNGTC 1 cut(s) 955
AjiI CACGTC 4 cut(s) 398, 2051, 3297, 3321
AjnI CCWGG 2 cut(s) 727, 1024
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 208, 208, 240
AleI CACNNNNGTG 1 cut(s) 3119
Alw21I GWGCWC 2 cut(s) 701, 2568
Alw26I GTCTC 6 cut(s) 1043, 2089, 2132, 2171, 2303, 2781
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 7 cut(s) 254, 283, 643, 1914, 2154, 2667, 3218
AlwNI CAGNNNCTG 1 cut(s) 1895
AoxI GGCC 5 cut(s) 404, 563, 2752, 2855, 2944
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 9 cut(s) 622, 1001, 1592, 1634, 1796, 1892, 2102, 2603, 3044
ApoI RAATTY 5 cut(s) 781, 2622, 2921, 3161, 3392
ArsI GACNNNNNNTTYG 6 cut(s) 602, 634, 800, 832, 2394, 2426
AsiSI GCGATCGC 1 cut(s) 43
Asp700I GAANNNNTTC 2 cut(s) 861, 2946
AspA2I CCTAGG 1 cut(s) 284
AspLEI GCGC 4 cut(s) 125, 295, 892, 3126
AspS9I GGNCC 2 cut(s) 1237, 2855
AsuC2I CCSGG 2 cut(s) 321, 1757
AsuHPI GGTGA 9 cut(s) 270, 368, 378, 1516, 1556, 1991, 2023, 2951, 3231
AvaII GGWCC 1 cut(s) 1237
AvrII CCTAGG 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 2985
BaeGI GKGCMC 2 cut(s) 701, 1778
BalI TGGCCA 1 cut(s) 2754
BanI GGYRCC 1 cut(s) 1773
BanII GRGCYC 1 cut(s) 2568
BbrPI CACGTG 1 cut(s) 2864
BbsI GAAGAC 5 cut(s) 63, 951, 1411, 3186, 3213
Bbv12I GWGCWC 2 cut(s) 701, 2568
BbvCI CCTCAGC 1 cut(s) 975
BbvI GCAGC 9 cut(s) 634, 1013, 1579, 1621, 1808, 1879, 2114, 2615, 3031
BceAI ACGGC 3 cut(s) 659, 1865, 2633
BcgI CGANNNNNNTGC 2 cut(s) 1369, 1403
BciT130I CCWGG 2 cut(s) 729, 1026
BciVI GTATCC 1 cut(s) 219
BclI TGATCA 2 cut(s) 895, 3082
BcnI CCSGG 2 cut(s) 321, 1757
BcoDI GTCTC 6 cut(s) 1043, 2089, 2132, 2171, 2303, 2781
BfaI CTAG 7 cut(s) 285, 312, 702, 2456, 3071, 3281, 3305
BfoI RGCGCY 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 1636
BfuI GTATCC 1 cut(s) 219
BglII AGATCT 4 cut(s) 1957, 3253, 3277, 3301
BlnI CCTAGG 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 2019
Bme1390I CCNGG 4 cut(s) 321, 729, 1026, 1757
Bme18I GGWCC 1 cut(s) 1237
BmeRI GACNNNNNGTC 1 cut(s) 955
BmgBI CACGTC 4 cut(s) 398, 2051, 3297, 3321
BmgT120I GGNCC 2 cut(s) 1237, 2855
BmiI GGNNCC 3 cut(s) 1238, 1775, 2076
BmrFI CCNGG 4 cut(s) 321, 729, 1026, 1757
BpiI GAAGAC 5 cut(s) 63, 951, 1411, 3186, 3213
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 975
Bpu1102I GCTNAGC 1 cut(s) 2019
BpuEI CTTGAG 4 cut(s) 1195, 1625, 2084, 2363
BpuMI CCSGG 2 cut(s) 321, 1757
Bsa29I ATCGAT 1 cut(s) 2108
BsaAI YACGTR 1 cut(s) 2864
BsaBI GATNNNNATC 2 cut(s) 530, 1464
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 6 cut(s) 284, 364, 401, 728, 2220, 2749
BsaWI WCCGGW 2 cut(s) 152, 2320
BsaXI ACNNNNNCTCC 2 cut(s) 2066, 2096
Bsc4I CCNNNNNNNGG 3 cut(s) 1059, 1784, 2655
Bse1I ACTGG 4 cut(s) 1939, 2050, 2641, 2826
Bse21I CCTNAGG 1 cut(s) 2985
Bse3DI GCAATG 3 cut(s) 693, 833, 2554
Bse8I GATNNNNATC 2 cut(s) 530, 1464
BseBI CCWGG 2 cut(s) 729, 1026
BseCI ATCGAT 1 cut(s) 2108
BseDI CCNNGG 6 cut(s) 284, 364, 401, 728, 2220, 2749
BseJI GATNNNNATC 2 cut(s) 530, 1464
BseLI CCNNNNNNNGG 3 cut(s) 1059, 1784, 2655
BseMI GCAATG 3 cut(s) 693, 833, 2554
BseMII CTCAG 9 cut(s) 133, 966, 1709, 1722, 1934, 2033, 2102, 2677, 2976
BseNI ACTGG 4 cut(s) 1939, 2050, 2641, 2826
BseRI GAGGAG 5 cut(s) 20, 76, 1582, 2150, 2277
BseSI GKGCMC 2 cut(s) 701, 1778
BseXI GCAGC 9 cut(s) 634, 1013, 1579, 1621, 1808, 1879, 2114, 2615, 3031
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 6 cut(s) 635, 686, 764, 1946, 2557, 2895
Bsh1236I CGCG 3 cut(s) 39, 739, 3126
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 5 cut(s) 406, 565, 2754, 2857, 2946
BshNI GGYRCC 1 cut(s) 1773
BshVI ATCGAT 1 cut(s) 2108
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 701, 2568
BsiSI CCGG 4 cut(s) 153, 320, 1757, 2321
BslFI GGGAC 1 cut(s) 962
BslI CCNNNNNNNGG 3 cut(s) 1059, 1784, 2655
BsmAI GTCTC 6 cut(s) 1043, 2089, 2132, 2171, 2303, 2781
BsmBI CGTCTC 3 cut(s) 2171, 2303, 2781
BsmFI GGGAC 1 cut(s) 962
BsmI GAATGC 1 cut(s) 2672
BsnI GGCC 5 cut(s) 406, 565, 2754, 2857, 2946
Bso31I GGTCTC 1 cut(s) 1043
Bsp1286I GDGCHC 3 cut(s) 701, 1778, 2568
Bsp1720I GCTNAGC 1 cut(s) 2019
BspACI CCGC 7 cut(s) 28, 34, 37, 46, 478, 652, 739
BspANI GGCC 5 cut(s) 406, 565, 2754, 2857, 2946
BspCNI CTCAG 9 cut(s) 132, 967, 1710, 1723, 1933, 2032, 2101, 2676, 2977
BspDI ATCGAT 1 cut(s) 2108
BspFNI CGCG 3 cut(s) 39, 739, 3126
BspLI GGNNCC 3 cut(s) 1238, 1775, 2076
BspMI ACCTGC 1 cut(s) 1636
BspPI GGATC 7 cut(s) 254, 283, 643, 1914, 2154, 2667, 3218
BspQI GCTCTTC 1 cut(s) 2573
BspT107I GGYRCC 1 cut(s) 1773
BspTNI GGTCTC 1 cut(s) 1043
BsrDI GCAATG 3 cut(s) 693, 833, 2554
BsrI ACTGG 4 cut(s) 1939, 2050, 2641, 2826
BssECI CCNNGG 6 cut(s) 284, 364, 401, 728, 2220, 2749
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 5 cut(s) 284, 364, 401, 2220, 2749
Bst2UI CCWGG 2 cut(s) 729, 1026
Bst4CI ACNGT 5 cut(s) 1251, 1294, 1490, 2143, 2746
Bst6I CTCTTC 4 cut(s) 26, 1026, 2573, 2684
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 2 cut(s) 1773, 2609
BstBAI YACGTR 1 cut(s) 2864
BstC8I GCNNGC 8 cut(s) 50, 291, 504, 1139, 1361, 1703, 1707, 2193
BstFNI CGCG 3 cut(s) 39, 739, 3126
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 4 cut(s) 125, 295, 892, 3126
BstMAI GTCTC 6 cut(s) 1043, 2089, 2132, 2171, 2303, 2781
BstMCI CGRYCG 1 cut(s) 43
BstNI CCWGG 2 cut(s) 729, 1026
BstNSI RCATGY 3 cut(s) 2547, 2672, 3274
BstSCI CCNGG 4 cut(s) 319, 727, 1024, 1755
BstSLI GKGCMC 2 cut(s) 701, 1778
BstUI CGCG 3 cut(s) 39, 739, 3126
BstV1I GCAGC 9 cut(s) 634, 1013, 1579, 1621, 1808, 1879, 2114, 2615, 3031
BstV2I GAAGAC 5 cut(s) 63, 951, 1411, 3186, 3213
BstX2I RGATCY 6 cut(s) 1957, 2659, 3223, 3253, 3277, 3301
BstYI RGATCY 6 cut(s) 1957, 2659, 3223, 3253, 3277, 3301
Bsu15I ATCGAT 1 cut(s) 2108
Bsu36I CCTNAGG 1 cut(s) 2985
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 5 cut(s) 406, 565, 2754, 2857, 2946
BsuTUI ATCGAT 1 cut(s) 2108
BtrI CACGTC 4 cut(s) 398, 2051, 3297, 3321
BtsI GCAGTG 1 cut(s) 1375
BtsIMutI CAGTG 2 cut(s) 1375, 2819
BveI ACCTGC 1 cut(s) 1636
Cac8I GCNNGC 8 cut(s) 50, 291, 504, 1139, 1361, 1703, 1707, 2193
CaiI CAGNNNCTG 1 cut(s) 1895
CfoI GCGC 4 cut(s) 125, 295, 892, 3126
Cfr13I GGNCC 2 cut(s) 1237, 2855
ClaI ATCGAT 1 cut(s) 2108
CseI GACGC 3 cut(s) 69, 1038, 2798
Csp6I GTAC 2 cut(s) 2888, 3348
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviQI GTAC 2 cut(s) 2888, 3348
DraI TTTAAA 2 cut(s) 373, 421
DriI GACNNNNNGTC 1 cut(s) 955
EaeI YGGCCR 1 cut(s) 2752
Eam1104I CTCTTC 4 cut(s) 26, 1026, 2573, 2684
Eam1105I GACNNNNNGTC 1 cut(s) 955
EarI CTCTTC 4 cut(s) 26, 1026, 2573, 2684
Ecl136II GAGCTC 1 cut(s) 2566
Eco130I CCWWGG 5 cut(s) 284, 364, 401, 2220, 2749
Eco147I AGGCCT 3 cut(s) 406, 565, 2946
Eco24I GRGCYC 1 cut(s) 2568
Eco31I GGTCTC 1 cut(s) 1043
Eco32I GATATC 1 cut(s) 2179
Eco47I GGWCC 1 cut(s) 1237
Eco53kI GAGCTC 1 cut(s) 2566
Eco57I CTGAAG 4 cut(s) 195, 702, 1887, 3180
Eco72I CACGTG 1 cut(s) 2864
Eco81I CCTNAGG 1 cut(s) 2985
EcoICRI GAGCTC 1 cut(s) 2566
EcoO109I RGGNCCY 1 cut(s) 1237
EcoRI GAATTC 1 cut(s) 3392
EcoRII CCWGG 2 cut(s) 727, 1024
EcoRV GATATC 1 cut(s) 2179
EcoT14I CCWWGG 5 cut(s) 284, 364, 401, 2220, 2749
EcoT22I ATGCAT 2 cut(s) 1218, 2674
EcoT38I GRGCYC 1 cut(s) 2568
ErhI CCWWGG 5 cut(s) 284, 364, 401, 2220, 2749
Esp3I CGTCTC 3 cut(s) 2171, 2303, 2781
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 1869, 1901
FaqI GGGAC 1 cut(s) 962
FauI CCCGC 2 cut(s) 471, 732
FauNDI CATATG 2 cut(s) 1557, 1612
FbaI TGATCA 2 cut(s) 895, 3082
FblI GTMKAC 1 cut(s) 1190
FriOI GRGCYC 1 cut(s) 2568
FspBI CTAG 7 cut(s) 285, 312, 702, 2456, 3071, 3281, 3305
GlaI GCGC 4 cut(s) 124, 294, 891, 3125
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 406, 565, 2754, 2857, 2946
HapII CCGG 4 cut(s) 153, 320, 1757, 2321
HgaI GACGC 3 cut(s) 69, 1038, 2798
HhaI GCGC 4 cut(s) 125, 295, 892, 3126
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 4 cut(s) 123, 293, 890, 3124
HinP1I GCGC 4 cut(s) 123, 293, 890, 3124
HindIII AAGCTT 2 cut(s) 50, 2706
HpaII CCGG 4 cut(s) 153, 320, 1757, 2321
HphI GGTGA 9 cut(s) 270, 368, 378, 1516, 1556, 1991, 2023, 2951, 3231
Hpy166II GTNNAC 4 cut(s) 699, 1191, 1451, 3053
Hpy8I GTNNAC 4 cut(s) 699, 1191, 1451, 3053
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 5 cut(s) 576, 2819, 2868, 2936, 2957
HpyCH4III ACNGT 5 cut(s) 1251, 1294, 1490, 2143, 2746
HpyCH4IV ACGT 7 cut(s) 397, 612, 2050, 2423, 2863, 3296, 3320
HpySE526I ACGT 7 cut(s) 397, 612, 2050, 2423, 2863, 3296, 3320
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 4 cut(s) 123, 293, 890, 3124
Ksp22I TGATCA 2 cut(s) 895, 3082
LguI GCTCTTC 1 cut(s) 2573
LmnI GCTCC 6 cut(s) 7, 1306, 2074, 2290, 2965, 3189
Lsp1109I GCAGC 9 cut(s) 634, 1013, 1579, 1621, 1808, 1879, 2114, 2615, 3031
MaeI CTAG 7 cut(s) 285, 312, 702, 2456, 3071, 3281, 3305
MaeII ACGT 7 cut(s) 397, 612, 2050, 2423, 2863, 3296, 3320
MaeIII GTNAC 5 cut(s) 356, 1490, 1655, 1915, 2627
MfeI CAATTG 2 cut(s) 1626, 2499
MflI RGATCY 6 cut(s) 1957, 2659, 3223, 3253, 3277, 3301
MhlI GDGCHC 3 cut(s) 701, 1778, 2568
MlsI TGGCCA 1 cut(s) 2754
MluNI TGGCCA 1 cut(s) 2754
MlyI GAGTC 5 cut(s) 153, 214, 491, 1616, 2290
MmeI TCCRAC 5 cut(s) 1237, 1270, 1884, 3251, 3311
Mox20I TGGCCA 1 cut(s) 2754
Mph1103I ATGCAT 2 cut(s) 1218, 2674
MroXI GAANNNNTTC 2 cut(s) 861, 2946
MscI TGGCCA 1 cut(s) 2754
MslI CAYNNNNRTG 2 cut(s) 662, 3119
Msp20I TGGCCA 1 cut(s) 2754
MspA1I CMGCKG 2 cut(s) 1141, 1892
MspI CCGG 4 cut(s) 153, 320, 1757, 2321
MspR9I CCNGG 4 cut(s) 321, 729, 1026, 1757
MunI CAATTG 2 cut(s) 1626, 2499
Mva1269I GAATGC 1 cut(s) 2672
MvaI CCWGG 2 cut(s) 729, 1026
MvnI CGCG 3 cut(s) 39, 739, 3126
NciI CCSGG 2 cut(s) 321, 1757
NdeI CATATG 2 cut(s) 1557, 1612
NlaIV GGNNCC 3 cut(s) 1238, 1775, 2076
NmuCI GTSAC 3 cut(s) 356, 1490, 2627
NsiI ATGCAT 2 cut(s) 1218, 2674
NspI RCATGY 3 cut(s) 2547, 2672, 3274
OliI CACNNNNGTG 1 cut(s) 3119
PceI AGGCCT 3 cut(s) 406, 565, 2946
PciSI GCTCTTC 1 cut(s) 2573
PctI GAATGC 1 cut(s) 2672
PdmI GAANNNNTTC 2 cut(s) 861, 2946
PfeI GAWTC 6 cut(s) 200, 239, 269, 2777, 2876, 3074
PflFI GACNNNGTC 1 cut(s) 1186
PfoI TCCNGGA 1 cut(s) 1024
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 5 cut(s) 152, 214, 490, 1615, 2290
PmaCI CACGTG 1 cut(s) 2864
PmlI CACGTG 1 cut(s) 2864
PpsI GAGTC 5 cut(s) 152, 214, 490, 1615, 2290
Ppu21I YACGTR 1 cut(s) 2864
PpuMI RGGWCCY 1 cut(s) 1237
Psp124BI GAGCTC 1 cut(s) 2568
Psp5II RGGWCCY 1 cut(s) 1237
Psp6I CCWGG 2 cut(s) 727, 1024
PspCI CACGTG 1 cut(s) 2864
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 727, 1024
PspN4I GGNNCC 3 cut(s) 1238, 1775, 2076
PspPI GGNCC 2 cut(s) 1237, 2855
PspPPI RGGWCCY 1 cut(s) 1237
PsrI GAACNNNNNNTAC 2 cut(s) 1107, 1139
PstNI CAGNNNCTG 1 cut(s) 1895
PsuI RGATCY 6 cut(s) 1957, 2659, 3223, 3253, 3277, 3301
PsyI GACNNNGTC 1 cut(s) 1186
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 2 cut(s) 1141, 1892
RgaI GCGATCGC 1 cut(s) 43
RsaI GTAC 2 cut(s) 2889, 3349
RsaNI GTAC 2 cut(s) 2888, 3348
RseI CAYNNNNRTG 2 cut(s) 662, 3119
SacI GAGCTC 1 cut(s) 2568
SapI GCTCTTC 1 cut(s) 2573
Sau96I GGNCC 2 cut(s) 1237, 2855
SchI GAGTC 5 cut(s) 153, 214, 491, 1616, 2290
ScrFI CCNGG 4 cut(s) 321, 729, 1026, 1757
SduI GDGCHC 3 cut(s) 701, 1778, 2568
SfaAI GCGATCGC 1 cut(s) 43
SgfI GCGATCGC 1 cut(s) 43
SinI GGWCC 1 cut(s) 1237
SmiMI CAYNNNNRTG 2 cut(s) 662, 3119
SmlI CTYRAG 4 cut(s) 1174, 1604, 2063, 2342
SmoI CTYRAG 4 cut(s) 1174, 1604, 2063, 2342
SseBI AGGCCT 3 cut(s) 406, 565, 2946
SsiI CCGC 7 cut(s) 28, 34, 37, 46, 478, 652, 739
SspI AATATT 2 cut(s) 498, 1084
SspMI CTAG 7 cut(s) 285, 312, 702, 2456, 3071, 3281, 3305
SstI GAGCTC 1 cut(s) 2568
StuI AGGCCT 3 cut(s) 406, 565, 2946
StyD4I CCNGG 4 cut(s) 319, 727, 1024, 1755
StyI CCWWGG 5 cut(s) 284, 364, 401, 2220, 2749
TaaI ACNGT 5 cut(s) 1251, 1294, 1490, 2143, 2746
TaiI ACGT 7 cut(s) 400, 615, 2053, 2426, 2866, 3299, 3323
TaqI TCGA 5 cut(s) 111, 142, 1389, 2108, 2247
TatI WGTACW 1 cut(s) 2887
TauI GCSGC 2 cut(s) 39, 48
TfiI GAWTC 6 cut(s) 200, 239, 269, 2777, 2876, 3074
TscAI CASTG 2 cut(s) 1382, 2826
TseFI GTSAC 3 cut(s) 356, 1490, 2627
TseI GCWGC 9 cut(s) 622, 1001, 1592, 1634, 1796, 1892, 2102, 2603, 3044
Tsp45I GTSAC 3 cut(s) 356, 1490, 2627
TspGWI ACGGA 3 cut(s) 185, 650, 1601
TspRI CASTG 2 cut(s) 1382, 2826
Tth111I GACNNNGTC 1 cut(s) 1186
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 1237
XapI RAATTY 5 cut(s) 781, 2622, 2921, 3161, 3392
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 3 cut(s) 2547, 2672, 3274
XcmI CCANNNNNNNNNTGG 2 cut(s) 1253, 1973
XmaJI CCTAGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 1190
XmnI GAANNNNTTC 2 cut(s) 861, 2946
XspI CTAG 7 cut(s) 285, 312, 702, 2456, 3071, 3281, 3305
Zsp2I ATGCAT 2 cut(s) 1218, 2674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.