RLG00000004066

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019996
Physical Location & Seq
Reverse (-)
55806194 .. 55807424
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004066

Sequence Viewer

Length: 366 bp
ATGGAAGGGATGATGTGCCACGAGGTGCAGGAGTCGAAGTTGTGCTCCGTGCATTGCGTCGTGGTGGCATTGCAGGGTCCTTTCTTCTCCAAATTTGATTTGGCGGCGCTCACCTCTTATTTAGACCGAAAGGAGCGCCAGACGATGCAGTTCAACCTCCAAGCCGGACCTAAAGCCGCCGCTGGCGATTTCCTCTCTGAGGAGTCCCAGAACTTCTCTATCAAGAGGAACCACCTCGAGGACTCCTTTCCGGCCGACACTGAACCCATCCACCTTCCCACGCCCTCCAAATCGACCTGCTGCAGGCCATCAGAACATCCCCCATCACTGATCCAGAGGCCGTCCCTAATCTTCCATGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

5.81

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 10 - 71 1.8e-08 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019996)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004066
rosa_multiflora Rmu_sc0002343.1_g000052 Rmu_sc0002902.1_g000041 Rmu_sc0004298.1_g000002
rosa_roxburghii Rroxscaffold_4G00322200
rosa_samantha Rh2DG198000 Rh3DG346100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 305
AciI CCGC 3 cut(s) 104, 177, 180
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 92
AdeI CACNNNGTG 1 cut(s) 25
AfiI CCNNNNNNNGG 3 cut(s) 199, 238, 303
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw21I GWGCWC 1 cut(s) 47
AlwI GGATC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 252, 305, 338
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 109, 138
AspS9I GGNCC 2 cut(s) 77, 167
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 77, 167
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 287
BccI CCATC 3 cut(s) 275, 316, 331
BceAI ACGGC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 301
BfoI RGCGCY 2 cut(s) 110, 139
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 4 cut(s) 105, 177, 180, 301
BlsI GCNGC 4 cut(s) 106, 178, 181, 302
Bme18I GGWCC 2 cut(s) 77, 167
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 77, 167
BmiI GGNNCC 2 cut(s) 78, 230
BmsI GCATC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 238, 303
Bse3DI GCAATG 2 cut(s) 52, 68
BseGI GGATG 3 cut(s) 15, 267, 316
BseLI CCNNNNNNNGG 3 cut(s) 199, 238, 303
BseMI GCAATG 2 cut(s) 52, 68
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 254, 307, 340
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 165, 251
BslFI GGGAC 2 cut(s) 190, 328
BslI CCNNNNNNNGG 3 cut(s) 199, 238, 303
BsmFI GGGAC 2 cut(s) 190, 328
BsnI GGCC 3 cut(s) 254, 307, 340
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 330
BspACI CCGC 3 cut(s) 104, 177, 180
BspANI GGCC 3 cut(s) 254, 307, 340
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 78, 230
BspMAI CTGCAG 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 325
BsrDI GCAATG 2 cut(s) 52, 68
BssMI GATC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 184, 305
BstDEI CTNAG 1 cut(s) 198
BstENI CCTNNNNNAGG 2 cut(s) 197, 301
BstF5I GGATG 3 cut(s) 15, 267, 316
BstH2I RGCGCY 2 cut(s) 110, 139
BstHHI GCGC 2 cut(s) 109, 138
BstKTI GATC 1 cut(s) 333
BstMBI GATC 1 cut(s) 330
BstMCI CGRYCG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 287
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 254, 307, 340
BtsCI GGATG 3 cut(s) 15, 267, 316
BtsIMutI CAGTG 2 cut(s) 258, 326
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 184, 305
CfoI GCGC 2 cut(s) 109, 138
Cfr13I GGNCC 2 cut(s) 77, 167
CseI GACGC 1 cut(s) 46
CviAII CATG 1 cut(s) 356
CviJI RGCY 6 cut(s) 164, 176, 254, 307, 340, 363
CviKI_1 RGCY 6 cut(s) 164, 176, 254, 307, 340, 363
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
EclXI CGGCCG 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 77, 167
Eco52I CGGCCG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 236
EcoNI CCTNNNNNAGG 2 cut(s) 197, 301
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 1 cut(s) 359
FaiI YATR 1 cut(s) 357
FaqI GGGAC 2 cut(s) 190, 328
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 105, 177, 180, 301
FokI GGATG 3 cut(s) 22, 254, 303
Fsp4HI GCNGC 4 cut(s) 105, 177, 180, 301
GlaI GCGC 2 cut(s) 108, 137
GluI GCNGC 4 cut(s) 105, 177, 180, 301
HaeII RGCGCY 2 cut(s) 110, 139
HaeIII GGCC 3 cut(s) 254, 307, 340
HapII CCGG 2 cut(s) 165, 251
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 109, 138
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 2 cut(s) 107, 136
HinP1I GCGC 2 cut(s) 107, 136
HinfI GANTC 3 cut(s) 32, 203, 242
HpaII CCGG 2 cut(s) 165, 251
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 199, 313
Hpy188III TCNNGA 2 cut(s) 223, 334
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 28, 52, 73, 148, 303
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 2 cut(s) 107, 136
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 50, 133
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 135
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 2 cut(s) 76, 343
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 92
MlyI GAGTC 3 cut(s) 41, 212, 236
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 165, 251
NdeII GATC 1 cut(s) 330
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 78, 230
PaeR7I CTCGAG 1 cut(s) 236
PkrI GCNGC 4 cut(s) 106, 178, 181, 302
PleI GAGTC 3 cut(s) 40, 211, 236
PpsI GAGTC 3 cut(s) 40, 211, 236
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 78, 230
PspPI GGNCC 2 cut(s) 77, 167
PspPPI RGGWCCY 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 1 cut(s) 305
SatI GCNGC 4 cut(s) 105, 177, 180, 301
Sau3AI GATC 1 cut(s) 330
Sau96I GGNCC 2 cut(s) 77, 167
SchI GAGTC 3 cut(s) 41, 212, 236
SduI GDGCHC 1 cut(s) 47
SetI ASST 8 cut(s) 27, 116, 159, 172, 237, 276, 299, 365
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 77, 167
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 92
SsiI CCGC 3 cut(s) 104, 177, 180
TaqI TCGA 3 cut(s) 35, 237, 293
TaqII GACCGA 1 cut(s) 141
TasI AATT 1 cut(s) 92
TauI GCSGC 3 cut(s) 107, 179, 182
TscAI CASTG 2 cut(s) 265, 333
TseI GCWGC 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 265, 333
VpaK11BI GGWCC 2 cut(s) 77, 167
XagI CCTNNNNNAGG 2 cut(s) 197, 301
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.