Rh2DG198000

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019996
Physical Location & Seq
Reverse (-)
18208745 .. 18208984
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG198000.1

Sequence Viewer

Length: 240 bp
ATGATGTACCACGAGGTGCAGGAGTCGAAGCTGTGCGCCGTGCATTGCGTCGTGGTGGCGTTGCAGGGTCCTTTCTTCTCCGAATTTGATTTGGCGGCGCTCACCTCTAATCTTGACCAGAAGGTGCGCCAAACGATGCAGCTCAACCTCCAAGCCGGACCCAACGCCGTAGCTGGCGATTTCCTCTCCGAGGAGTGCAAGAACGTCTCCCTCAAGAGGAGTATGCCTTCACCGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

79

Amino Acids

8.73

Weight (kDa)

5.5

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 7 - 49 4.7e-09 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019996)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004066
rosa_multiflora Rmu_sc0002343.1_g000052 Rmu_sc0002902.1_g000041 Rmu_sc0004298.1_g000002
rosa_roxburghii Rroxscaffold_4G00322200
rosa_samantha Rh2DG198000 Rh3DG346100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 233
AcsI RAATTY 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 190, 216
AluBI AGCT 3 cut(s) 31, 142, 173
AluI AGCT 3 cut(s) 31, 142, 173
Alw26I GTCTC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 3 cut(s) 38, 100, 129
AspS9I GGNCC 2 cut(s) 68, 158
AsuHPI GGTGA 2 cut(s) 94, 222
AvaII GGWCC 2 cut(s) 68, 158
BauI CACGAG 1 cut(s) 11
BbvI GCAGC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 23, 152
BcoDI GTCTC 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 96, 140
BlsI GCNGC 2 cut(s) 97, 141
Bme18I GGWCC 2 cut(s) 68, 158
BmgT120I GGNCC 2 cut(s) 68, 158
BmiI GGNNCC 2 cut(s) 69, 160
BmsI GCATC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 216
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 190, 216
BseMI GCAATG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 206, 232
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 190, 216
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BspACI CCGC 2 cut(s) 95, 233
BspLI GGNNCC 2 cut(s) 69, 160
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 189
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 3 cut(s) 38, 100, 129
BstMAI GTCTC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 3 cut(s) 38, 100, 129
Cfr13I GGNCC 2 cut(s) 68, 158
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 4 cut(s) 31, 142, 155, 173
CviKI_1 RGCY 4 cut(s) 31, 142, 155, 173
CviQI GTAC 1 cut(s) 7
DraIII CACNNNGTG 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 68, 158
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 211
FaiI YATR 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 96, 140
Fsp4HI GCNGC 2 cut(s) 96, 140
GlaI GCGC 3 cut(s) 37, 99, 128
GluI GCNGC 2 cut(s) 96, 140
HaeII RGCGCY 1 cut(s) 101
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 37
HhaI GCGC 3 cut(s) 38, 100, 129
Hin6I GCGC 3 cut(s) 36, 98, 127
HinP1I GCGC 3 cut(s) 36, 98, 127
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 94, 222
Hpy188I TCNGA 2 cut(s) 82, 190
Hpy188III TCNNGA 2 cut(s) 113, 214
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 115, 237
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 19, 43, 64, 139, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 204
HspAI GCGC 3 cut(s) 36, 98, 127
LpnPI CCDG 5 cut(s) 5, 50, 131, 159, 169
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 204
MboII GAAGA 1 cut(s) 67
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 7 cut(s) 7, 115, 158, 184, 194, 210, 221
MspI CCGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 69, 160
PkrI GCNGC 2 cut(s) 97, 141
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 69, 160
PspPI GGNCC 2 cut(s) 68, 158
PspPPI RGGWCCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 2 cut(s) 96, 140
Sau96I GGNCC 2 cut(s) 68, 158
SchI GAGTC 1 cut(s) 32
SetI ASST 8 cut(s) 18, 33, 107, 126, 144, 150, 175, 207
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 2 cut(s) 68, 158
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 83
SsiI CCGC 2 cut(s) 95, 233
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 98
TseI GCWGC 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 68, 158
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.