Rh3DG346100

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019996
Physical Location & Seq
Forward (+)
39168935 .. 39169183
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG346100.1

Sequence Viewer

Length: 249 bp
ATGGAAGGGATGATGTGCCGCGAGGTGCAGGAGTCGAAGTTGTGCACTGTGCATCGCATCAACATGGCTTTGCAGGATTCTTTCTTATCTGAATTCAATTTGACGGCGCTTGCCTCCAATCTCGATCGCAAGGAATGCCAGATGATGCAGCTCAACCTCCTAGCCGGACCCAACACCGCCGCCGGCAATTTCCTCTCCGAGGAGTCCCACAACGTCTCCCTCAAGAGGAGTATGCCTTCACCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

5.55

Isoelectric Point (pI)

63.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 10 - 73 1.3e-08 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019996)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004066
rosa_multiflora Rmu_sc0002343.1_g000052 Rmu_sc0002902.1_g000041 Rmu_sc0004298.1_g000002
rosa_roxburghii Rroxscaffold_4G00322200
rosa_samantha Rh2DG198000 Rh3DG346100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 3 cut(s) 19, 177, 180
AcsI RAATTY 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 199, 225
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 220
Alw44I GTGCAC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 3 cut(s) 19, 149, 180
BlsI GCNGC 3 cut(s) 20, 150, 181
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 169
BmsI GCATC 3 cut(s) 61, 66, 135
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 225
Bse118I RCCGGY 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 199, 225
BseRI GAGGAG 2 cut(s) 215, 241
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 2 cut(s) 165, 183
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 199, 225
BsmAI GTCTC 1 cut(s) 220
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 3 cut(s) 19, 177, 180
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 111, 184
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 111, 184
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 1 cut(s) 64
CviJI RGCY 3 cut(s) 68, 151, 164
CviKI_1 RGCY 3 cut(s) 68, 151, 164
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 233
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 19, 149, 180
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 19, 149, 180
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 108
GluI GCNGC 3 cut(s) 19, 149, 180
HaeII RGCGCY 1 cut(s) 110
HapII CCGG 2 cut(s) 165, 183
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 3 cut(s) 32, 77, 203
HpaII CCGG 2 cut(s) 165, 183
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 91, 199
Hpy188III TCNNGA 2 cut(s) 122, 223
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 28, 45, 52, 73, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 14, 59, 152, 178, 196
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 3 cut(s) 61, 66, 135
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 213
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 3 cut(s) 92, 97, 187
MlyI GAGTC 2 cut(s) 41, 212
MnlI CCTC 7 cut(s) 16, 124, 167, 193, 203, 219, 230
MroNI GCCGGC 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 2 cut(s) 165, 183
Mva1269I GAATGC 1 cut(s) 140
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 135
NaeI GCCGGC 1 cut(s) 184
NdeII GATC 1 cut(s) 124
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 169
PctI GAATGC 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 20, 150, 181
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 2 cut(s) 40, 211
PpsI GAGTC 2 cut(s) 40, 211
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 167
PvuI CGATCG 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 62
SatI GCNGC 3 cut(s) 19, 149, 180
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 41, 212
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 27, 153, 159, 216
SfaNI GCATC 3 cut(s) 61, 66, 135
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 3 cut(s) 92, 97, 187
SsiI CCGC 3 cut(s) 19, 177, 180
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 35, 123
TasI AATT 3 cut(s) 92, 97, 187
TauI GCSGC 2 cut(s) 21, 182
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 148
TspRI CASTG 1 cut(s) 52
VneI GTGCAC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 92
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.