Rmu_sc0002902.1_g000041

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002902.1
OG0019996
Physical Location & Seq
Reverse (-)
232542 .. 232781
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002902.1_g000041.1.cds

Sequence Viewer

Length: 240 bp
atggaagggatgatgtaccatgaggtgcaggcgtcaaagctgtgcgctgtgcattgcatcgtggtggcgttgcagggtcctttcttctccaaatttgatttggcggcgctcacctttgatcttgaccaaaagatgcaccagacgatgcagctcaacctccgagcattacccaacgccgccgcgggcgatttcctctccgaggagtcccagaacgtctccctcaagaggaatatgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

79

Amino Acids

8.83

Weight (kDa)

5.8

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019996)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004066
rosa_multiflora Rmu_sc0002343.1_g000052 Rmu_sc0002902.1_g000041 Rmu_sc0004298.1_g000002
rosa_roxburghii Rroxscaffold_4G00322200
rosa_samantha Rh2DG198000 Rh3DG346100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 4 cut(s) 104, 177, 180, 182
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 199, 225
AluBI AGCT 2 cut(s) 40, 151
AluI AGCT 2 cut(s) 40, 151
Alw26I GTCTC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 47, 109
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 4 cut(s) 105, 149, 177, 180
BlsI GCNGC 4 cut(s) 106, 150, 178, 181
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 3 cut(s) 66, 123, 135
BpuEI CTTGAG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 180, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 225
Bse3DI GCAATG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 180, 198
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 199, 225
BseMI GCAATG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 199, 225
BsmAI GTCTC 1 cut(s) 220
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 4 cut(s) 104, 177, 180, 182
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 180, 198
BssMI GATC 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 30, 184
BstDSI CCRYGG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 47, 109
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 118
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 30, 184
CfoI GCGC 2 cut(s) 47, 109
Cfr13I GGNCC 1 cut(s) 77
Cfr42I CCGCGG 1 cut(s) 183
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 20
CviJI RGCY 2 cut(s) 40, 151
CviKI_1 RGCY 2 cut(s) 40, 151
CviQI GTAC 1 cut(s) 16
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 233
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 105, 149, 177, 180
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 105, 149, 177, 180
GlaI GCGC 2 cut(s) 46, 108
GluI GCNGC 4 cut(s) 105, 149, 177, 180
HaeII RGCGCY 1 cut(s) 110
HgaI GACGC 1 cut(s) 21
HhaI GCGC 2 cut(s) 47, 109
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 2 cut(s) 45, 107
HinP1I GCGC 2 cut(s) 45, 107
HinfI GANTC 1 cut(s) 203
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 161, 199
Hpy188III TCNNGA 2 cut(s) 122, 223
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 28, 52, 57, 73, 136, 148
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 2 cut(s) 45, 107
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 14, 59, 152, 221
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 3 cut(s) 66, 123, 135
MaeII ACGT 1 cut(s) 213
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 76
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 16, 167, 193, 203, 219, 230
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 182
MvnI CGCG 1 cut(s) 182
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 78
PkrI GCNGC 4 cut(s) 106, 150, 178, 181
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 183
SatI GCNGC 4 cut(s) 105, 149, 177, 180
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 212
SetI ASST 6 cut(s) 27, 42, 116, 153, 159, 216
SfaNI GCATC 3 cut(s) 66, 123, 135
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 92
SsiI CCGC 4 cut(s) 104, 177, 180, 182
TaiI ACGT 1 cut(s) 216
TasI AATT 1 cut(s) 92
TauI GCSGC 3 cut(s) 107, 179, 182
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.