Ataxin-3 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000004066 |
| rosa_multiflora | Rmu_sc0002343.1_g000052 Rmu_sc0002902.1_g000041 Rmu_sc0004298.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00322200 |
| rosa_samantha | Rh2DG198000 Rh3DG346100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 104, 242 |
| AcsI | RAATTY | 1 cut(s) | 92 |
| AdeI | CACNNNGTG | 1 cut(s) | 25 |
| AfaI | GTAC | 1 cut(s) | 17 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 225 |
| AluBI | AGCT | 1 cut(s) | 40 |
| AluI | AGCT | 1 cut(s) | 40 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| Alw44I | GTGCAC | 1 cut(s) | 43 |
| ApaLI | GTGCAC | 1 cut(s) | 43 |
| ApoI | RAATTY | 1 cut(s) | 92 |
| AspS9I | GGNCC | 2 cut(s) | 77, 167 |
| AsuHPI | GGTGA | 3 cut(s) | 103, 145, 231 |
| AvaII | GGWCC | 2 cut(s) | 77, 167 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| BauI | CACGAG | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 105 |
| BlsI | GCNGC | 1 cut(s) | 106 |
| Bme18I | GGWCC | 2 cut(s) | 77, 167 |
| BmgT120I | GGNCC | 2 cut(s) | 77, 167 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmsI | GCATC | 2 cut(s) | 135, 157 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 177, 209 |
| BpuEI | CTTGAG | 1 cut(s) | 206 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 225 |
| Bse3DI | GCAATG | 1 cut(s) | 52 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 225 |
| BseMI | GCAATG | 1 cut(s) | 52 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 1 cut(s) | 47 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BsiSI | CCGG | 2 cut(s) | 165, 183 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 225 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsmBI | CGTCTC | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 47 |
| BspACI | CCGC | 2 cut(s) | 104, 242 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BsrDI | GCAATG | 1 cut(s) | 52 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssSI | CACGAG | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst2BI | CACGAG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 197 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 241 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 2 cut(s) | 77, 167 |
| CseI | GACGC | 1 cut(s) | 46 |
| Csp6I | GTAC | 1 cut(s) | 16 |
| CviJI | RGCY | 4 cut(s) | 40, 138, 164, 182 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 138, 164, 182 |
| CviQI | GTAC | 1 cut(s) | 16 |
| DraIII | CACNNNGTG | 1 cut(s) | 25 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco47I | GGWCC | 2 cut(s) | 77, 167 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 197 |
| EcoO109I | RGGNCCY | 1 cut(s) | 77 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| EcoT22I | ATGCAT | 1 cut(s) | 150 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| Esp3I | CGTCTC | 1 cut(s) | 220 |
| FaiI | YATR | 1 cut(s) | 233 |
| Fnu4HI | GCNGC | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 105 |
| HapII | CCGG | 2 cut(s) | 165, 183 |
| HgaI | GACGC | 1 cut(s) | 46 |
| HinfI | GANTC | 1 cut(s) | 32 |
| HpaII | CCGG | 2 cut(s) | 165, 183 |
| HphI | GGTGA | 3 cut(s) | 103, 145, 231 |
| Hpy166II | GTNNAC | 1 cut(s) | 45 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 223 |
| Hpy8I | GTNNAC | 1 cut(s) | 45 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 124, 246 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 213 |
| HpyCH4V | TGCA | 5 cut(s) | 28, 45, 52, 148, 207 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 241 |
| HpySE526I | ACGT | 1 cut(s) | 213 |
| LpnPI | CCDG | 6 cut(s) | 14, 59, 140, 152, 178, 196 |
| LweI | GCATC | 2 cut(s) | 135, 157 |
| MaeII | ACGT | 1 cut(s) | 213 |
| MboII | GAAGA | 2 cut(s) | 17, 76 |
| MhlI | GDGCHC | 1 cut(s) | 47 |
| MluCI | AATT | 1 cut(s) | 92 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MnlI | CCTC | 6 cut(s) | 16, 124, 167, 203, 219, 230 |
| Mph1103I | ATGCAT | 1 cut(s) | 150 |
| MspI | CCGG | 2 cut(s) | 165, 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 241 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| NsiI | ATGCAT | 1 cut(s) | 150 |
| PkrI | GCNGC | 1 cut(s) | 106 |
| PleI | GAGTC | 1 cut(s) | 40 |
| PpsI | GAGTC | 1 cut(s) | 40 |
| PpuMI | RGGWCCY | 1 cut(s) | 77 |
| Psp5II | RGGWCCY | 1 cut(s) | 77 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| PspPI | GGNCC | 2 cut(s) | 77, 167 |
| PspPPI | RGGWCCY | 1 cut(s) | 77 |
| RsaI | GTAC | 1 cut(s) | 17 |
| RsaNI | GTAC | 1 cut(s) | 16 |
| SatI | GCNGC | 1 cut(s) | 105 |
| Sau96I | GGNCC | 2 cut(s) | 77, 167 |
| SchI | GAGTC | 1 cut(s) | 41 |
| SduI | GDGCHC | 1 cut(s) | 47 |
| SetI | ASST | 7 cut(s) | 27, 42, 116, 135, 159, 172, 216 |
| SfaNI | GCATC | 2 cut(s) | 135, 157 |
| SinI | GGWCC | 2 cut(s) | 77, 167 |
| SmlI | CTYRAG | 1 cut(s) | 221 |
| SmoI | CTYRAG | 1 cut(s) | 221 |
| Sse9I | AATT | 1 cut(s) | 92 |
| SsiI | CCGC | 2 cut(s) | 104, 242 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 1 cut(s) | 216 |
| TaqI | TCGA | 2 cut(s) | 35, 123 |
| TasI | AATT | 1 cut(s) | 92 |
| TauI | GCSGC | 1 cut(s) | 107 |
| VneI | GTGCAC | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 2 cut(s) | 77, 167 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 197 |
| XapI | RAATTY | 1 cut(s) | 92 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 97 |
| Zsp2I | ATGCAT | 1 cut(s) | 150 |