RLG00000004573

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
60416316 .. 60417605
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004573

Sequence Viewer

Length: 1290 bp
ATGAGTCTGGGGACCGATTGTCCTCCAATCCATAATAACTCTGGTGATGAATTCTCCATCTGTGAGGAGAGGACCACAAAGAAGCCTAAGGTAGAAGAAGAGATTAATGATCATCATCTAGGAACAACAACAACAACAACAAGAAGCATAGATCAGATAGAGATAAAAAATCCTTGTGCTTCTGCTTCTACTACTTGTGCTTCTTGTTTGTGTGACGATTGTGCAAACTTTGCTGTGACATTCAGTTTTAAATATAACGATGGTGAAATTGAGCTTTTACGCAAGGTGGCCACTCACGAAATACTCCACAGCAGAAAACTCCAGTTGGTACTCAATCTCAATCACACCTTGTTGAGAATCGCCGGTATCGATGATCTGACCCTGGAAGAAGAAGCATATTTAGATACCCAATTCACCGATGATCCTCTGCGGCAAGATATTCTCATGGTGACAGTTCCTCCCAAAATGAAATCTATGTTTCTCAAGTTTAGGCCCTTTGTTCAAACCTTTCTCAAGGAAGACAGTGACATGTTTGAGATGAATGTATACTCAAATTCCCCTCTATCTCTTGTGCAGGAAATGATTCGGCTACTGGATCCAAGGAATGAGTACTTCGGTTCTAGGGTGTTTTCGCGAGACGATTTTTGCAGCACCCACCCGAAAAACAAGTGCCTCGATGTTTTCCTTGCTCAAGAGTCTGCTGTTTTGATCCTTGATCATAGACTAGAGGCATGGAGGGAGCAAAATCAAAATAATGTAATGCCTATGCAAAAGTATTTTTTCTGTGAAGAAGAGGAGAGCGAGCTCAGATCTTGTTGCGAGATGGAAACTAATGAAGAGTATTATCTTGCACTTATTCTTCAACGTCTTAAGCAGATACACAATGGGTTCTTTGATGACGAAGTAATATGTGACAAACTTATCGACAGAGATGTGAGGAAGGTGTTAGAAACTCTTCGGGGGTCCGTCTTGGGAGGGTGTAAAATTGCTTTCGACCCTCTTCAGGCCGATAAGCTACAGTTGTGGAAGATGGCAGAGCAGTTGGGAGCTACTTGTGTTGAAAAAGTGGACGCATCGGTCACACATGTGGTTGCAGCTCATGCTGGAACACCGGAATCTCGTTGGGCCCTGGAAGAGAAAAAGTTCTTGGTCTATCCGAGTTGGATTGAAGCATCACATTGTATGTGGCAAAAGTGTCATGAAGACAGGTTTCCTGTTTTTGAGGATGACCAAATTGAGCAAGACCGCAAGAGAGACAAGAAGAAGAAAAGTAAAAGGAAGAGATTTTAG

Protein Analysis

430

Amino Acids

49.78

Weight (kDa)

5.27

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 109 - 274 2.2e-19 NLI interacting factor-like phosphatase
BRCT PF00533 323 - 392 1.4e-06 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018636)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 546
AccII CGCG 1 cut(s) 634
AciI CCGC 2 cut(s) 430, 1246
AclWI GGATC 4 cut(s) 416, 590, 603, 703
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 50, 553
AcuI CTGAAG 1 cut(s) 986
AfaI GTAC 2 cut(s) 330, 611
AfiI CCNNNNNNNGG 1 cut(s) 1003
AflII CTTAAG 1 cut(s) 869
AflIII ACRYGT 2 cut(s) 528, 1084
AgsI TTSAA 4 cut(s) 503, 863, 1061, 1169
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 2 cut(s) 381, 1128
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
AleI CACNNNNGTG 1 cut(s) 1085
AluBI AGCT 5 cut(s) 274, 805, 1015, 1049, 1097
AluI AGCT 5 cut(s) 274, 805, 1015, 1049, 1097
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 2 cut(s) 630, 1248
AlwI GGATC 4 cut(s) 416, 590, 603, 703
AoxI GGCC 4 cut(s) 288, 491, 1005, 1125
ApaI GGGCCC 1 cut(s) 1129
ApeKI GCWGC 2 cut(s) 648, 1094
ApoI RAATTY 2 cut(s) 50, 553
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 3 cut(s) 582, 954, 1142
AspS9I GGNCC 6 cut(s) 12, 72, 492, 963, 1125, 1126
AsuHPI GGTGA 4 cut(s) 56, 275, 406, 460
AvaII GGWCC 3 cut(s) 12, 72, 963
AxyI CCTNAGG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 1129
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 807, 1129
BbsI GAAGAC 2 cut(s) 525, 1209
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 2 cut(s) 660, 1106
BccI CCATC 4 cut(s) 65, 254, 817, 1024
BciT130I CCWGG 2 cut(s) 383, 1130
BclI TGATCA 2 cut(s) 109, 715
BcoDI GTCTC 2 cut(s) 630, 1248
BfaI CTAG 3 cut(s) 119, 621, 725
BfmI CTRYAG 1 cut(s) 1016
BfrI CTTAAG 1 cut(s) 869
BglII AGATCT 1 cut(s) 809
BisI GCNGC 3 cut(s) 431, 649, 1095
BlsI GCNGC 3 cut(s) 432, 650, 1096
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 2 cut(s) 383, 1130
Bme18I GGWCC 3 cut(s) 12, 72, 963
BmeRI GACNNNNNGTC 1 cut(s) 18
BmgT120I GGNCC 6 cut(s) 12, 72, 492, 963, 1125, 1126
BmiI GGNNCC 4 cut(s) 13, 597, 964, 1127
BmrFI CCNGG 2 cut(s) 383, 1130
BmsI GCATC 2 cut(s) 1082, 1181
BpiI GAAGAC 2 cut(s) 525, 1209
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 3 cut(s) 467, 497, 675
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 381, 599, 1128
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 1003
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 322, 597
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 2 cut(s) 383, 1130
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 381, 599, 1128
BseGI GGATG 1 cut(s) 1231
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 1003
BseMII CTCAG 1 cut(s) 820
BseNI ACTGG 2 cut(s) 322, 597
BseRI GAGGAG 2 cut(s) 80, 809
BseSI GKGCMC 1 cut(s) 1129
BseXI GCAGC 2 cut(s) 660, 1106
BsgI GTGCAG 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 634
BshFI GGCC 4 cut(s) 290, 493, 1007, 1127
BshVI ATCGAT 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 2 cut(s) 363, 1112
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 1003
BsmAI GTCTC 2 cut(s) 630, 1248
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 4 cut(s) 290, 493, 1007, 1127
Bsp120I GGGCCC 1 cut(s) 1125
Bsp1286I GDGCHC 2 cut(s) 807, 1129
Bsp143I GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
Bsp68I TCGCGA 1 cut(s) 634
BspACI CCGC 2 cut(s) 430, 1246
BspANI GGCC 4 cut(s) 290, 493, 1007, 1127
BspCNI CTCAG 1 cut(s) 819
BspDI ATCGAT 1 cut(s) 369
BspFNI CGCG 1 cut(s) 634
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 4 cut(s) 13, 597, 964, 1127
BspPI GGATC 4 cut(s) 416, 590, 603, 703
BspTI CTTAAG 1 cut(s) 869
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 322, 597
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 3 cut(s) 381, 599, 1128
BssMI GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
BssNAI GTATAC 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 599
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 2 cut(s) 383, 1130
Bst4CI ACNGT 3 cut(s) 454, 524, 1020
Bst6I CTCTTC 7 cut(s) 93, 786, 831, 960, 1005, 1128, 1274
BstAFI CTTAAG 1 cut(s) 869
BstAPI GCANNNNNTGC 2 cut(s) 230, 1100
BstC8I GCNNGC 1 cut(s) 803
BstDEI CTNAG 2 cut(s) 87, 806
BstF5I GGATG 1 cut(s) 1231
BstFNI CGCG 1 cut(s) 634
BstKTI GATC 8 cut(s) 112, 154, 376, 424, 598, 711, 718, 812
BstMAI GTCTC 2 cut(s) 630, 1248
BstMBI GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
BstMWI GCNNNNNNNGC 2 cut(s) 230, 1100
BstNI CCWGG 2 cut(s) 383, 1130
BstNSI RCATGY 2 cut(s) 532, 1088
BstSCI CCNGG 2 cut(s) 381, 1128
BstSFI CTRYAG 1 cut(s) 1016
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 2 cut(s) 660, 1106
BstV2I GAAGAC 2 cut(s) 525, 1209
BstX2I RGATCY 2 cut(s) 595, 809
BstYI RGATCY 2 cut(s) 595, 809
BstZ17I GTATAC 1 cut(s) 547
Bsu15I ATCGAT 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 4 cut(s) 290, 493, 1007, 1127
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 1 cut(s) 1231
BtsIMutI CAGTG 1 cut(s) 529
BtuMI TCGCGA 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 803
CciI TCATGA 1 cut(s) 1198
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 6 cut(s) 12, 72, 492, 963, 1125, 1126
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 2 cut(s) 329, 610
CviAII CATG 6 cut(s) 445, 529, 732, 1085, 1100, 1199
CviQI GTAC 2 cut(s) 329, 610
DdeI CTNAG 2 cut(s) 87, 806
DpnI GATC 8 cut(s) 111, 153, 375, 423, 597, 710, 717, 811
DpnII GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
DraI TTTAAA 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 1076
DriI GACNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 1076
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 7 cut(s) 93, 786, 831, 960, 1005, 1128, 1274
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 7 cut(s) 93, 786, 831, 960, 1005, 1128, 1274
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 1 cut(s) 599
Eco24I GRGCYC 2 cut(s) 807, 1129
Eco47I GGWCC 3 cut(s) 12, 72, 963
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 986
Eco81I CCTNAGG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 2 cut(s) 492, 1126
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 381, 1128
EcoT14I CCWWGG 1 cut(s) 599
EcoT38I GRGCYC 2 cut(s) 807, 1129
ErhI CCWWGG 1 cut(s) 599
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 6 cut(s) 448, 532, 735, 1088, 1103, 1202
FaqI GGGAC 1 cut(s) 25
FatI CATG 6 cut(s) 444, 528, 731, 1084, 1099, 1198
FbaI TGATCA 2 cut(s) 109, 715
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 431, 649, 1095
FokI GGATG 1 cut(s) 1238
FriOI GRGCYC 2 cut(s) 807, 1129
Fsp4HI GCNGC 3 cut(s) 431, 649, 1095
FspBI CTAG 3 cut(s) 119, 621, 725
GluI GCNGC 3 cut(s) 431, 649, 1095
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 4 cut(s) 290, 493, 1007, 1127
HapII CCGG 2 cut(s) 363, 1112
HgaI GACGC 1 cut(s) 1079
Hin1II CATG 6 cut(s) 448, 532, 735, 1088, 1103, 1202
HinfI GANTC 5 cut(s) 4, 357, 583, 695, 1115
HpaII CCGG 2 cut(s) 363, 1112
HphI GGTGA 4 cut(s) 56, 275, 406, 460
Hpy166II GTNNAC 2 cut(s) 547, 1069
Hpy188I TCNGA 4 cut(s) 156, 378, 809, 1158
Hpy188III TCNNGA 4 cut(s) 296, 633, 692, 1199
Hpy8I GTNNAC 2 cut(s) 547, 1069
HpyAV CCTTC 1 cut(s) 934
HpyCH4III ACNGT 3 cut(s) 454, 524, 1020
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 6 cut(s) 224, 574, 648, 769, 851, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 1100
HpyF3I CTNAG 2 cut(s) 87, 806
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 6 cut(s) 448, 532, 735, 1088, 1103, 1202
Ksp22I TGATCA 2 cut(s) 109, 715
Kzo9I GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
LmnI GCTCC 2 cut(s) 739, 1046
Lsp1109I GCAGC 2 cut(s) 660, 1106
LweI GCATC 2 cut(s) 1082, 1181
MaeI CTAG 3 cut(s) 119, 621, 725
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 6 cut(s) 212, 235, 448, 524, 911, 1078
MalI GATC 8 cut(s) 111, 153, 375, 423, 597, 710, 717, 811
MboI GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
MflI RGATCY 2 cut(s) 595, 809
MhlI GDGCHC 2 cut(s) 807, 1129
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 6 cut(s) 50, 267, 410, 553, 984, 1233
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 13, 704
MmeI TCCRAC 1 cut(s) 1142
Mox20I TGGCCA 1 cut(s) 290
MroXI GAANNNNTTC 3 cut(s) 582, 954, 1142
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 105, 249, 870
MslI CAYNNNNRTG 1 cut(s) 1085
Msp20I TGGCCA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 2 cut(s) 363, 1112
MspR9I CCNGG 2 cut(s) 383, 1130
MvaI CCWGG 2 cut(s) 383, 1130
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 2 cut(s) 230, 1100
NdeII GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
NlaIII CATG 6 cut(s) 448, 532, 735, 1088, 1103, 1202
NlaIV GGNNCC 4 cut(s) 13, 597, 964, 1127
NmuCI GTSAC 6 cut(s) 212, 235, 448, 524, 911, 1078
NruI TCGCGA 1 cut(s) 634
NspI RCATGY 2 cut(s) 532, 1088
OliI CACNNNNGTG 1 cut(s) 1085
PagI TCATGA 1 cut(s) 1198
PciI ACATGT 2 cut(s) 528, 1084
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdmI GAANNNNTTC 3 cut(s) 582, 954, 1142
PfeI GAWTC 3 cut(s) 357, 583, 1115
PkrI GCNGC 3 cut(s) 432, 650, 1096
PleI GAGTC 2 cut(s) 12, 703
PpsI GAGTC 2 cut(s) 12, 703
PscI ACATGT 2 cut(s) 528, 1084
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 381, 1128
PspGI CCWGG 2 cut(s) 381, 1128
PspN4I GGNNCC 4 cut(s) 13, 597, 964, 1127
PspOMI GGGCCC 1 cut(s) 1125
PspPI GGNCC 6 cut(s) 12, 72, 492, 963, 1125, 1126
PsuI RGATCY 2 cut(s) 595, 809
RruI TCGCGA 1 cut(s) 634
RsaI GTAC 2 cut(s) 330, 611
RsaNI GTAC 2 cut(s) 329, 610
RseI CAYNNNNRTG 1 cut(s) 1085
SacI GAGCTC 1 cut(s) 807
SaqAI TTAA 3 cut(s) 105, 249, 870
SatI GCNGC 3 cut(s) 431, 649, 1095
Sau3AI GATC 8 cut(s) 109, 151, 373, 421, 595, 708, 715, 809
Sau96I GGNCC 6 cut(s) 12, 72, 492, 963, 1125, 1126
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 2 cut(s) 13, 704
ScrFI CCNGG 2 cut(s) 383, 1130
SduI GDGCHC 2 cut(s) 807, 1129
SfaNI GCATC 2 cut(s) 1082, 1181
SfcI CTRYAG 1 cut(s) 1016
SinI GGWCC 3 cut(s) 12, 72, 963
SmiMI CAYNNNNRTG 1 cut(s) 1085
SmlI CTYRAG 4 cut(s) 482, 512, 690, 869
SmoI CTYRAG 4 cut(s) 482, 512, 690, 869
Sse9I AATT 6 cut(s) 50, 267, 410, 553, 984, 1233
SsiI CCGC 2 cut(s) 430, 1246
SspMI CTAG 3 cut(s) 119, 621, 725
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 381, 1128
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 3 cut(s) 454, 524, 1020
TaiI ACGT 1 cut(s) 868
TaqI TCGA 4 cut(s) 369, 675, 924, 993
TaqII GACCGA 2 cut(s) 29, 1066
TasI AATT 6 cut(s) 50, 267, 410, 553, 984, 1233
TatI WGTACW 1 cut(s) 609
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 3 cut(s) 357, 583, 1115
Tru1I TTAA 3 cut(s) 105, 249, 870
Tru9I TTAA 3 cut(s) 105, 249, 870
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 6 cut(s) 212, 235, 448, 524, 911, 1078
TseI GCWGC 2 cut(s) 648, 1094
Tsp45I GTSAC 6 cut(s) 212, 235, 448, 524, 911, 1078
TspDTI ATGAA 5 cut(s) 63, 482, 554, 849, 1215
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 3 cut(s) 12, 72, 963
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 2 cut(s) 50, 553
XceI RCATGY 2 cut(s) 532, 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 3 cut(s) 582, 954, 1142
XspI CTAG 3 cut(s) 119, 621, 725
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.