RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr7g0189961 |
| rosa_laevigata | RLG00000004573 RLG00000024741 |
| rosa_multiflora | Rmu_co8447775.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265010 |
| rosa_rugosa | Rorug06G0501500 |
| rosa_samantha | Rh7AG106600 Rh7BG109300 Rh7CG111400 Rh7DG109800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 995 |
| AccBSI | CCGCTC | 1 cut(s) | 742 |
| AccII | CGCG | 1 cut(s) | 553 |
| AciI | CCGC | 5 cut(s) | 229, 349, 493, 506, 742 |
| AclWI | GGATC | 4 cut(s) | 335, 509, 522, 622 |
| AcsI | RAATTY | 2 cut(s) | 4, 472 |
| AcuI | CTGAAG | 1 cut(s) | 905 |
| AfaI | GTAC | 3 cut(s) | 249, 467, 530 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AflII | CTTAAG | 1 cut(s) | 788 |
| AflIII | ACRYGT | 2 cut(s) | 447, 1003 |
| AgsI | TTSAA | 8 cut(s) | 422, 782, 980, 1088, 1142, 1150, 1162, 1189 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1049, 1081 |
| AleI | CACNNNNGTG | 1 cut(s) | 1004 |
| AluBI | AGCT | 5 cut(s) | 193, 724, 934, 968, 1016 |
| AluI | AGCT | 5 cut(s) | 193, 724, 934, 968, 1016 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| Alw26I | GTCTC | 1 cut(s) | 549 |
| AlwI | GGATC | 4 cut(s) | 335, 509, 522, 622 |
| AoxI | GGCC | 3 cut(s) | 38, 410, 924 |
| ApeKI | GCWGC | 1 cut(s) | 1013 |
| ApoI | RAATTY | 2 cut(s) | 4, 472 |
| AseI | ATTAAT | 1 cut(s) | 60 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 501, 873, 1061 |
| AspS9I | GGNCC | 4 cut(s) | 27, 39, 411, 882 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 325 |
| AvaII | GGWCC | 2 cut(s) | 27, 882 |
| BaeGI | GKGCMC | 1 cut(s) | 1048 |
| BamHI | GGATCC | 1 cut(s) | 514 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 1 cut(s) | 1025 |
| BccI | CCATC | 3 cut(s) | 19, 173, 943 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BclI | TGATCA | 2 cut(s) | 64, 634 |
| BcoDI | GTCTC | 1 cut(s) | 549 |
| BfaI | CTAG | 3 cut(s) | 540, 644, 1049 |
| BfmI | CTRYAG | 1 cut(s) | 935 |
| BfrI | CTTAAG | 1 cut(s) | 788 |
| BisI | GCNGC | 2 cut(s) | 350, 1014 |
| BlpI | GCTNAGC | 1 cut(s) | 954 |
| BlsI | GCNGC | 2 cut(s) | 351, 1015 |
| BmcAI | AGTACT | 1 cut(s) | 530 |
| Bme1390I | CCNGG | 1 cut(s) | 302 |
| Bme18I | GGWCC | 2 cut(s) | 27, 882 |
| BmgT120I | GGNCC | 4 cut(s) | 27, 39, 411, 882 |
| BmiI | GGNNCC | 2 cut(s) | 516, 883 |
| BmrFI | CCNGG | 1 cut(s) | 302 |
| BmsI | GCATC | 3 cut(s) | 100, 1001, 1100 |
| BpmI | CTGGAG | 1 cut(s) | 224 |
| Bpu10I | CCTNAGC | 1 cut(s) | 725 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 954 |
| BpuEI | CTTGAG | 5 cut(s) | 386, 416, 594, 1090, 1104 |
| Bsa29I | ATCGAT | 1 cut(s) | 1165 |
| BsaBI | GATNNNNATC | 2 cut(s) | 69, 101 |
| BsaJI | CCNNGG | 2 cut(s) | 42, 300 |
| BsaWI | WCCGGW | 1 cut(s) | 1030 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 361, 391 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse118I | RCCGGY | 1 cut(s) | 281 |
| Bse1I | ACTGG | 3 cut(s) | 241, 441, 516 |
| Bse8I | GATNNNNATC | 2 cut(s) | 69, 101 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseCI | ATCGAT | 1 cut(s) | 1165 |
| BseDI | CCNNGG | 2 cut(s) | 42, 300 |
| BseJI | GATNNNNATC | 2 cut(s) | 69, 101 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseMII | CTCAG | 3 cut(s) | 263, 739, 945 |
| BseNI | ACTGG | 3 cut(s) | 241, 441, 516 |
| BseRI | GAGGAG | 1 cut(s) | 728 |
| BseSI | GKGCMC | 1 cut(s) | 1048 |
| BseXI | GCAGC | 1 cut(s) | 1025 |
| BseYI | CCCAGC | 1 cut(s) | 1154 |
| Bsh1236I | CGCG | 1 cut(s) | 553 |
| BshFI | GGCC | 3 cut(s) | 40, 412, 926 |
| BshVI | ATCGAT | 1 cut(s) | 1165 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BsiSI | CCGG | 2 cut(s) | 282, 1031 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsmAI | GTCTC | 1 cut(s) | 549 |
| BsmBI | CGTCTC | 1 cut(s) | 549 |
| BsnI | GGCC | 3 cut(s) | 40, 412, 926 |
| Bsp1286I | GDGCHC | 2 cut(s) | 726, 1048 |
| Bsp143I | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 954 |
| Bsp68I | TCGCGA | 1 cut(s) | 553 |
| BspACI | CCGC | 5 cut(s) | 229, 349, 493, 506, 742 |
| BspANI | GGCC | 3 cut(s) | 40, 412, 926 |
| BspCNI | CTCAG | 3 cut(s) | 264, 738, 946 |
| BspDI | ATCGAT | 1 cut(s) | 1165 |
| BspFNI | CGCG | 1 cut(s) | 553 |
| BspLI | GGNNCC | 2 cut(s) | 516, 883 |
| BspPI | GGATC | 4 cut(s) | 335, 509, 522, 622 |
| BspTI | CTTAAG | 1 cut(s) | 788 |
| BsrBI | CCGCTC | 1 cut(s) | 742 |
| BsrFI | RCCGGY | 1 cut(s) | 281 |
| BsrI | ACTGG | 3 cut(s) | 241, 441, 516 |
| BssAI | RCCGGY | 1 cut(s) | 281 |
| BssECI | CCNNGG | 2 cut(s) | 42, 300 |
| BssMI | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| Bst4CI | ACNGT | 2 cut(s) | 373, 939 |
| Bst6I | CTCTTC | 5 cut(s) | 48, 705, 879, 924, 1047 |
| BstAFI | CTTAAG | 1 cut(s) | 788 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1019 |
| BstC8I | GCNNGC | 4 cut(s) | 89, 606, 722, 740 |
| BstDEI | CTNAG | 3 cut(s) | 272, 725, 954 |
| BstFNI | CGCG | 1 cut(s) | 553 |
| BstKTI | GATC | 7 cut(s) | 67, 105, 295, 343, 517, 630, 637 |
| BstMAI | GTCTC | 1 cut(s) | 549 |
| BstMBI | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 149, 1019 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstNSI | RCATGY | 3 cut(s) | 91, 451, 1007 |
| BstSCI | CCNGG | 1 cut(s) | 300 |
| BstSFI | CTRYAG | 1 cut(s) | 935 |
| BstSLI | GKGCMC | 1 cut(s) | 1048 |
| BstUI | CGCG | 1 cut(s) | 553 |
| BstV1I | GCAGC | 1 cut(s) | 1025 |
| BstX2I | RGATCY | 1 cut(s) | 514 |
| BstYI | RGATCY | 1 cut(s) | 514 |
| Bsu15I | ATCGAT | 1 cut(s) | 1165 |
| BsuRI | GGCC | 3 cut(s) | 40, 412, 926 |
| BsuTUI | ATCGAT | 1 cut(s) | 1165 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| BtuMI | TCGCGA | 1 cut(s) | 553 |
| Cac8I | GCNNGC | 4 cut(s) | 89, 606, 722, 740 |
| Cfr10I | RCCGGY | 1 cut(s) | 281 |
| Cfr13I | GGNCC | 4 cut(s) | 27, 39, 411, 882 |
| ClaI | ATCGAT | 1 cut(s) | 1165 |
| CseI | GACGC | 1 cut(s) | 998 |
| Csp6I | GTAC | 3 cut(s) | 248, 466, 529 |
| CviAII | CATG | 5 cut(s) | 88, 448, 651, 1004, 1019 |
| CviQI | GTAC | 3 cut(s) | 248, 466, 529 |
| DdeI | CTNAG | 3 cut(s) | 272, 725, 954 |
| DpnI | GATC | 7 cut(s) | 66, 104, 294, 342, 516, 629, 636 |
| DpnII | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| DraI | TTTAAA | 1 cut(s) | 169 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 995 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 995 |
| Eam1104I | CTCTTC | 5 cut(s) | 48, 705, 879, 924, 1047 |
| EarI | CTCTTC | 5 cut(s) | 48, 705, 879, 924, 1047 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco47I | GGWCC | 2 cut(s) | 27, 882 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 1 cut(s) | 905 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoO109I | RGGNCCY | 1 cut(s) | 411 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| EcoT22I | ATGCAT | 1 cut(s) | 93 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| Esp3I | CGTCTC | 1 cut(s) | 549 |
| FaeI | CATG | 5 cut(s) | 91, 451, 654, 1007, 1022 |
| FatI | CATG | 5 cut(s) | 87, 447, 650, 1003, 1018 |
| FauI | CCCGC | 2 cut(s) | 486, 735 |
| FbaI | TGATCA | 2 cut(s) | 64, 634 |
| Fnu4HI | GCNGC | 2 cut(s) | 350, 1014 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 2 cut(s) | 350, 1014 |
| FspBI | CTAG | 3 cut(s) | 540, 644, 1049 |
| GluI | GCNGC | 2 cut(s) | 350, 1014 |
| GsaI | CCCAGC | 1 cut(s) | 1158 |
| GsuI | CTGGAG | 1 cut(s) | 224 |
| HaeIII | GGCC | 3 cut(s) | 40, 412, 926 |
| HapII | CCGG | 2 cut(s) | 282, 1031 |
| HgaI | GACGC | 1 cut(s) | 998 |
| Hin1II | CATG | 5 cut(s) | 91, 451, 654, 1007, 1022 |
| HinfI | GANTC | 7 cut(s) | 276, 502, 614, 914, 1034, 1110, 1182 |
| HpaII | CCGG | 2 cut(s) | 282, 1031 |
| HphI | GGTGA | 2 cut(s) | 194, 325 |
| Hpy166II | GTNNAC | 2 cut(s) | 466, 988 |
| Hpy188I | TCNGA | 4 cut(s) | 96, 297, 1077, 1181 |
| Hpy188III | TCNNGA | 6 cut(s) | 215, 552, 611, 1107, 1139, 1186 |
| Hpy8I | GTNNAC | 2 cut(s) | 466, 988 |
| HpyAV | CCTTC | 5 cut(s) | 749, 853, 1136, 1144, 1183 |
| HpyCH4III | ACNGT | 2 cut(s) | 373, 939 |
| HpyCH4IV | ACGT | 1 cut(s) | 784 |
| HpyCH4V | TGCA | 5 cut(s) | 91, 567, 688, 770, 1013 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 149, 1019 |
| HpyF3I | CTNAG | 3 cut(s) | 272, 725, 954 |
| HpySE526I | ACGT | 1 cut(s) | 784 |
| Hsp92II | CATG | 5 cut(s) | 91, 451, 654, 1007, 1022 |
| Ksp22I | TGATCA | 2 cut(s) | 64, 634 |
| Kzo9I | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| LmnI | GCTCC | 2 cut(s) | 658, 965 |
| Lsp1109I | GCAGC | 1 cut(s) | 1025 |
| LweI | GCATC | 3 cut(s) | 100, 1001, 1100 |
| MaeI | CTAG | 3 cut(s) | 540, 644, 1049 |
| MaeII | ACGT | 1 cut(s) | 784 |
| MaeIII | GTNAC | 5 cut(s) | 154, 367, 443, 830, 997 |
| MalI | GATC | 7 cut(s) | 66, 104, 294, 342, 516, 629, 636 |
| MbiI | CCGCTC | 1 cut(s) | 742 |
| MboI | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| MflI | RGATCY | 1 cut(s) | 514 |
| MhlI | GDGCHC | 2 cut(s) | 726, 1048 |
| MluCI | AATT | 5 cut(s) | 4, 186, 329, 472, 903 |
| MlyI | GAGTC | 4 cut(s) | 285, 623, 908, 1119 |
| MmeI | TCCRAC | 1 cut(s) | 1061 |
| Mph1103I | ATGCAT | 1 cut(s) | 93 |
| MroXI | GAANNNNTTC | 3 cut(s) | 501, 873, 1061 |
| MseI | TTAA | 3 cut(s) | 60, 168, 789 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1004 |
| MspCI | CTTAAG | 1 cut(s) | 788 |
| MspI | CCGG | 2 cut(s) | 282, 1031 |
| MspR9I | CCNGG | 1 cut(s) | 302 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| MvnI | CGCG | 1 cut(s) | 553 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 149, 1019 |
| NdeII | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| NlaIII | CATG | 5 cut(s) | 91, 451, 654, 1007, 1022 |
| NlaIV | GGNNCC | 2 cut(s) | 516, 883 |
| NmuCI | GTSAC | 5 cut(s) | 154, 367, 443, 830, 997 |
| NruI | TCGCGA | 1 cut(s) | 553 |
| NsiI | ATGCAT | 1 cut(s) | 93 |
| NspI | RCATGY | 3 cut(s) | 91, 451, 1007 |
| OliI | CACNNNNGTG | 1 cut(s) | 1004 |
| PaeI | GCATGC | 1 cut(s) | 91 |
| PciI | ACATGT | 2 cut(s) | 447, 1003 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 213 |
| PdmI | GAANNNNTTC | 3 cut(s) | 501, 873, 1061 |
| PfeI | GAWTC | 3 cut(s) | 502, 1034, 1182 |
| PkrI | GCNGC | 2 cut(s) | 351, 1015 |
| PleI | GAGTC | 4 cut(s) | 284, 622, 908, 1118 |
| PpsI | GAGTC | 4 cut(s) | 284, 622, 908, 1118 |
| PscI | ACATGT | 2 cut(s) | 447, 1003 |
| PshBI | ATTAAT | 1 cut(s) | 60 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspFI | CCCAGC | 1 cut(s) | 1154 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 516, 883 |
| PspPI | GGNCC | 4 cut(s) | 27, 39, 411, 882 |
| PsuI | RGATCY | 1 cut(s) | 514 |
| RruI | TCGCGA | 1 cut(s) | 553 |
| RsaI | GTAC | 3 cut(s) | 249, 467, 530 |
| RsaNI | GTAC | 3 cut(s) | 248, 466, 529 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1004 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 3 cut(s) | 60, 168, 789 |
| SatI | GCNGC | 2 cut(s) | 350, 1014 |
| Sau3AI | GATC | 7 cut(s) | 64, 102, 292, 340, 514, 627, 634 |
| Sau96I | GGNCC | 4 cut(s) | 27, 39, 411, 882 |
| ScaI | AGTACT | 1 cut(s) | 530 |
| SchI | GAGTC | 4 cut(s) | 285, 623, 908, 1119 |
| ScrFI | CCNGG | 1 cut(s) | 302 |
| SduI | GDGCHC | 2 cut(s) | 726, 1048 |
| SfaNI | GCATC | 3 cut(s) | 100, 1001, 1100 |
| SfcI | CTRYAG | 1 cut(s) | 935 |
| SinI | GGWCC | 2 cut(s) | 27, 882 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1004 |
| SmlI | CTYRAG | 6 cut(s) | 401, 431, 609, 788, 1105, 1119 |
| SmoI | CTYRAG | 6 cut(s) | 401, 431, 609, 788, 1105, 1119 |
| SphI | GCATGC | 1 cut(s) | 91 |
| Sse9I | AATT | 5 cut(s) | 4, 186, 329, 472, 903 |
| SsiI | CCGC | 5 cut(s) | 229, 349, 493, 506, 742 |
| SspMI | CTAG | 3 cut(s) | 540, 644, 1049 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 1 cut(s) | 300 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 2 cut(s) | 373, 939 |
| TaiI | ACGT | 1 cut(s) | 787 |
| TaqI | TCGA | 5 cut(s) | 594, 843, 912, 1165, 1173 |
| TaqII | GACCGA | 1 cut(s) | 985 |
| TasI | AATT | 5 cut(s) | 4, 186, 329, 472, 903 |
| TatI | WGTACW | 2 cut(s) | 465, 528 |
| TauI | GCSGC | 1 cut(s) | 352 |
| TfiI | GAWTC | 3 cut(s) | 502, 1034, 1182 |
| Tru1I | TTAA | 3 cut(s) | 60, 168, 789 |
| Tru9I | TTAA | 3 cut(s) | 60, 168, 789 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseFI | GTSAC | 5 cut(s) | 154, 367, 443, 830, 997 |
| TseI | GCWGC | 1 cut(s) | 1013 |
| Tsp45I | GTSAC | 5 cut(s) | 154, 367, 443, 830, 997 |
| TspDTI | ATGAA | 4 cut(s) | 17, 401, 473, 768 |
| TspGWI | ACGGA | 1 cut(s) | 874 |
| TspRI | CASTG | 1 cut(s) | 448 |
| Vha464I | CTTAAG | 1 cut(s) | 788 |
| VpaK11BI | GGWCC | 2 cut(s) | 27, 882 |
| VspI | ATTAAT | 1 cut(s) | 60 |
| XapI | RAATTY | 2 cut(s) | 4, 472 |
| XceI | RCATGY | 3 cut(s) | 91, 451, 1007 |
| XmnI | GAANNNNTTC | 3 cut(s) | 501, 873, 1061 |
| XspI | CTAG | 3 cut(s) | 540, 644, 1049 |
| ZrmI | AGTACT | 1 cut(s) | 530 |
| Zsp2I | ATGCAT | 1 cut(s) | 93 |