Rroxscaffold_3G00265010

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
58469113 .. 58471936
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265010.1

Sequence Viewer

Length: 1197 bp
ATGAATTCTCCATCTGTGAGGGAGAGGACCACAAAAAGGCCCAAGGTAGAAGAAGAGATTAATGATCATCATCTGGGAACAACAAGCATGCATCAGATAGAGATCAAAGATACTTGTGCTTCTTGTTTGTGTGATGATTGTGCCAACTTTGCTGTGACATTCAGTTTTAAATATAACGATGGTGAAATTGAGCTTTTACGCAAGGTCGCCACTCACGAAATACTCCACCGCAGAAAACTCCAGTTGGTACTCAATCTCAATCACACCTTGCTGAGAGTCGCCGGTATAGATGATCTGACCCTGGAAGAAGAAGCATATTTAGATACCCAATTCACCGATGATCCTCTGCGGCAAGATATTCTCATAGTGACAGTTCCTCCCAAAATGAAATCTATGCTTCTCAAGTTTAGGCCCTATGTTCAAACCTTTCTCAAGGAAGCCAGTGACATGTTTGAGATGAATGTGTACTCAAATTCCCCTCTATCTCTTGTGCGGGAAATGATTCCGCTACTGGATCCAAGAAATGAGTACTTCGGTTCTAGGGTGTTTTCGCGAGACGATTTTTGCAGAACCCACCCGAAAAACAAGTGCCTCGATGTTTTGCTTGCTCAAGAGTCTGCTGTTTTGATCCTTGATCATAAACTAGAGGCATGGAGGGAGCAAAATCAAAATAATGTAATGCCTATGCAAAAGTATTTTTTCTGTGAAGAAGAGGAGAGCGAGCTCAGGTCTTGTTGCGAGCGGGAAACTAATGAAGGGTATTATCTTGCATTTATTCTTCAACGTCTTAAGCAGATACACAATAGGTTCTTTGATGACGAAGTAATATGTGACAAACTTATCGACAGAGATGTGAGGAAGGTTTTAGAAACTCTTCGGGGGTCCGTCTTGGGAGGGTGTAAAATTGCTTTCGACTCTCTTCAGGCCGATAAGCTACAGTTGTGGAAGATGGCTGAGCAGTTGGGAGCTACTTGTGTTGAACAAGTGGACGCATCGGTCACACATGTGGTTGCAGCTCATGCTGGAACACCGGAATCTCTTTGGGCACTAGAAGAGAAAAAGTTCTTGGTCTATCCGAGTTGGATTGAAGCATCACACTTGTCCTCAAGAGTCAAGGCTCAAGCAGAGTTCTGGGTTCTTGAAGGCTTGAAGGCTGGGTTCAATCGATACTTCGATTTCAGATTCTTGAAGGCTTGA

Protein Analysis

398

Amino Acids

46.21

Weight (kDa)

5.56

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 82 - 246 2.9e-20 NLI interacting factor-like phosphatase
BRCT PF00533 296 - 365 2.4e-07 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018636)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 995
AccBSI CCGCTC 1 cut(s) 742
AccII CGCG 1 cut(s) 553
AciI CCGC 5 cut(s) 229, 349, 493, 506, 742
AclWI GGATC 4 cut(s) 335, 509, 522, 622
AcsI RAATTY 2 cut(s) 4, 472
AcuI CTGAAG 1 cut(s) 905
AfaI GTAC 3 cut(s) 249, 467, 530
AfiI CCNNNNNNNGG 1 cut(s) 36
AflII CTTAAG 1 cut(s) 788
AflIII ACRYGT 2 cut(s) 447, 1003
AgsI TTSAA 8 cut(s) 422, 782, 980, 1088, 1142, 1150, 1162, 1189
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
AleI CACNNNNGTG 1 cut(s) 1004
AluBI AGCT 5 cut(s) 193, 724, 934, 968, 1016
AluI AGCT 5 cut(s) 193, 724, 934, 968, 1016
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 4 cut(s) 335, 509, 522, 622
AoxI GGCC 3 cut(s) 38, 410, 924
ApeKI GCWGC 1 cut(s) 1013
ApoI RAATTY 2 cut(s) 4, 472
AseI ATTAAT 1 cut(s) 60
Asp700I GAANNNNTTC 3 cut(s) 501, 873, 1061
AspS9I GGNCC 4 cut(s) 27, 39, 411, 882
AsuHPI GGTGA 2 cut(s) 194, 325
AvaII GGWCC 2 cut(s) 27, 882
BaeGI GKGCMC 1 cut(s) 1048
BamHI GGATCC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 3 cut(s) 19, 173, 943
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 2 cut(s) 64, 634
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 540, 644, 1049
BfmI CTRYAG 1 cut(s) 935
BfrI CTTAAG 1 cut(s) 788
BisI GCNGC 2 cut(s) 350, 1014
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 2 cut(s) 351, 1015
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 27, 882
BmgT120I GGNCC 4 cut(s) 27, 39, 411, 882
BmiI GGNNCC 2 cut(s) 516, 883
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 100, 1001, 1100
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 725
Bpu1102I GCTNAGC 1 cut(s) 954
BpuEI CTTGAG 5 cut(s) 386, 416, 594, 1090, 1104
Bsa29I ATCGAT 1 cut(s) 1165
BsaBI GATNNNNATC 2 cut(s) 69, 101
BsaJI CCNNGG 2 cut(s) 42, 300
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 241, 441, 516
Bse8I GATNNNNATC 2 cut(s) 69, 101
BseBI CCWGG 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 1165
BseDI CCNNGG 2 cut(s) 42, 300
BseJI GATNNNNATC 2 cut(s) 69, 101
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 3 cut(s) 263, 739, 945
BseNI ACTGG 3 cut(s) 241, 441, 516
BseRI GAGGAG 1 cut(s) 728
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 1025
BseYI CCCAGC 1 cut(s) 1154
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 3 cut(s) 40, 412, 926
BshVI ATCGAT 1 cut(s) 1165
BsiHKAI GWGCWC 1 cut(s) 726
BsiSI CCGG 2 cut(s) 282, 1031
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 549
BsmBI CGTCTC 1 cut(s) 549
BsnI GGCC 3 cut(s) 40, 412, 926
Bsp1286I GDGCHC 2 cut(s) 726, 1048
Bsp143I GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
Bsp1720I GCTNAGC 1 cut(s) 954
Bsp68I TCGCGA 1 cut(s) 553
BspACI CCGC 5 cut(s) 229, 349, 493, 506, 742
BspANI GGCC 3 cut(s) 40, 412, 926
BspCNI CTCAG 3 cut(s) 264, 738, 946
BspDI ATCGAT 1 cut(s) 1165
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 516, 883
BspPI GGATC 4 cut(s) 335, 509, 522, 622
BspTI CTTAAG 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 3 cut(s) 241, 441, 516
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 42, 300
BssMI GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 373, 939
Bst6I CTCTTC 5 cut(s) 48, 705, 879, 924, 1047
BstAFI CTTAAG 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstC8I GCNNGC 4 cut(s) 89, 606, 722, 740
BstDEI CTNAG 3 cut(s) 272, 725, 954
BstFNI CGCG 1 cut(s) 553
BstKTI GATC 7 cut(s) 67, 105, 295, 343, 517, 630, 637
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
BstMWI GCNNNNNNNGC 2 cut(s) 149, 1019
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 3 cut(s) 91, 451, 1007
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 935
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 1025
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 1165
BsuRI GGCC 3 cut(s) 40, 412, 926
BsuTUI ATCGAT 1 cut(s) 1165
BtsIMutI CAGTG 1 cut(s) 448
BtuMI TCGCGA 1 cut(s) 553
Cac8I GCNNGC 4 cut(s) 89, 606, 722, 740
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 4 cut(s) 27, 39, 411, 882
ClaI ATCGAT 1 cut(s) 1165
CseI GACGC 1 cut(s) 998
Csp6I GTAC 3 cut(s) 248, 466, 529
CviAII CATG 5 cut(s) 88, 448, 651, 1004, 1019
CviQI GTAC 3 cut(s) 248, 466, 529
DdeI CTNAG 3 cut(s) 272, 725, 954
DpnI GATC 7 cut(s) 66, 104, 294, 342, 516, 629, 636
DpnII GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
DraI TTTAAA 1 cut(s) 169
DrdI GACNNNNNNGTC 1 cut(s) 995
DseDI GACNNNNNNGTC 1 cut(s) 995
Eam1104I CTCTTC 5 cut(s) 48, 705, 879, 924, 1047
EarI CTCTTC 5 cut(s) 48, 705, 879, 924, 1047
Ecl136II GAGCTC 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 27, 882
Eco53kI GAGCTC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 5 cut(s) 91, 451, 654, 1007, 1022
FatI CATG 5 cut(s) 87, 447, 650, 1003, 1018
FauI CCCGC 2 cut(s) 486, 735
FbaI TGATCA 2 cut(s) 64, 634
Fnu4HI GCNGC 2 cut(s) 350, 1014
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 2 cut(s) 350, 1014
FspBI CTAG 3 cut(s) 540, 644, 1049
GluI GCNGC 2 cut(s) 350, 1014
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 3 cut(s) 40, 412, 926
HapII CCGG 2 cut(s) 282, 1031
HgaI GACGC 1 cut(s) 998
Hin1II CATG 5 cut(s) 91, 451, 654, 1007, 1022
HinfI GANTC 7 cut(s) 276, 502, 614, 914, 1034, 1110, 1182
HpaII CCGG 2 cut(s) 282, 1031
HphI GGTGA 2 cut(s) 194, 325
Hpy166II GTNNAC 2 cut(s) 466, 988
Hpy188I TCNGA 4 cut(s) 96, 297, 1077, 1181
Hpy188III TCNNGA 6 cut(s) 215, 552, 611, 1107, 1139, 1186
Hpy8I GTNNAC 2 cut(s) 466, 988
HpyAV CCTTC 5 cut(s) 749, 853, 1136, 1144, 1183
HpyCH4III ACNGT 2 cut(s) 373, 939
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 5 cut(s) 91, 567, 688, 770, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 1019
HpyF3I CTNAG 3 cut(s) 272, 725, 954
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 5 cut(s) 91, 451, 654, 1007, 1022
Ksp22I TGATCA 2 cut(s) 64, 634
Kzo9I GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
LmnI GCTCC 2 cut(s) 658, 965
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 3 cut(s) 100, 1001, 1100
MaeI CTAG 3 cut(s) 540, 644, 1049
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 5 cut(s) 154, 367, 443, 830, 997
MalI GATC 7 cut(s) 66, 104, 294, 342, 516, 629, 636
MbiI CCGCTC 1 cut(s) 742
MboI GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 726, 1048
MluCI AATT 5 cut(s) 4, 186, 329, 472, 903
MlyI GAGTC 4 cut(s) 285, 623, 908, 1119
MmeI TCCRAC 1 cut(s) 1061
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 3 cut(s) 501, 873, 1061
MseI TTAA 3 cut(s) 60, 168, 789
MslI CAYNNNNRTG 1 cut(s) 1004
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 2 cut(s) 282, 1031
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 2 cut(s) 149, 1019
NdeII GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
NlaIII CATG 5 cut(s) 91, 451, 654, 1007, 1022
NlaIV GGNNCC 2 cut(s) 516, 883
NmuCI GTSAC 5 cut(s) 154, 367, 443, 830, 997
NruI TCGCGA 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 3 cut(s) 91, 451, 1007
OliI CACNNNNGTG 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 91
PciI ACATGT 2 cut(s) 447, 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 3 cut(s) 501, 873, 1061
PfeI GAWTC 3 cut(s) 502, 1034, 1182
PkrI GCNGC 2 cut(s) 351, 1015
PleI GAGTC 4 cut(s) 284, 622, 908, 1118
PpsI GAGTC 4 cut(s) 284, 622, 908, 1118
PscI ACATGT 2 cut(s) 447, 1003
PshBI ATTAAT 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 516, 883
PspPI GGNCC 4 cut(s) 27, 39, 411, 882
PsuI RGATCY 1 cut(s) 514
RruI TCGCGA 1 cut(s) 553
RsaI GTAC 3 cut(s) 249, 467, 530
RsaNI GTAC 3 cut(s) 248, 466, 529
RseI CAYNNNNRTG 1 cut(s) 1004
SacI GAGCTC 1 cut(s) 726
SaqAI TTAA 3 cut(s) 60, 168, 789
SatI GCNGC 2 cut(s) 350, 1014
Sau3AI GATC 7 cut(s) 64, 102, 292, 340, 514, 627, 634
Sau96I GGNCC 4 cut(s) 27, 39, 411, 882
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 4 cut(s) 285, 623, 908, 1119
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 726, 1048
SfaNI GCATC 3 cut(s) 100, 1001, 1100
SfcI CTRYAG 1 cut(s) 935
SinI GGWCC 2 cut(s) 27, 882
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 6 cut(s) 401, 431, 609, 788, 1105, 1119
SmoI CTYRAG 6 cut(s) 401, 431, 609, 788, 1105, 1119
SphI GCATGC 1 cut(s) 91
Sse9I AATT 5 cut(s) 4, 186, 329, 472, 903
SsiI CCGC 5 cut(s) 229, 349, 493, 506, 742
SspMI CTAG 3 cut(s) 540, 644, 1049
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 373, 939
TaiI ACGT 1 cut(s) 787
TaqI TCGA 5 cut(s) 594, 843, 912, 1165, 1173
TaqII GACCGA 1 cut(s) 985
TasI AATT 5 cut(s) 4, 186, 329, 472, 903
TatI WGTACW 2 cut(s) 465, 528
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 3 cut(s) 502, 1034, 1182
Tru1I TTAA 3 cut(s) 60, 168, 789
Tru9I TTAA 3 cut(s) 60, 168, 789
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 5 cut(s) 154, 367, 443, 830, 997
TseI GCWGC 1 cut(s) 1013
Tsp45I GTSAC 5 cut(s) 154, 367, 443, 830, 997
TspDTI ATGAA 4 cut(s) 17, 401, 473, 768
TspGWI ACGGA 1 cut(s) 874
TspRI CASTG 1 cut(s) 448
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 27, 882
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 2 cut(s) 4, 472
XceI RCATGY 3 cut(s) 91, 451, 1007
XmnI GAANNNNTTC 3 cut(s) 501, 873, 1061
XspI CTAG 3 cut(s) 540, 644, 1049
ZrmI AGTACT 1 cut(s) 530
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.