Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018636

Physical Location & Seq

Genomic Coordinates Forward (+)

38671097 .. 38672470

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGAGATTGGTTCTGATGTTGACAGGGAGAGTGGCAGATATGAGAAGTCGAAAATGCACAAGGCAGAGGTTAATAATAAGGGCACAATCATACGAGAGATCAAGGGTGCTTCTGCTTCTTGTTTGTGTGATGTTTGTGTCAACTTTGCTGTGACATTCAGTTTTAACAATGATGAAATTGAAGGTTTGCGGAAGGTCAACACTCATGAAATGCTACACCAGAGAAAACTCCACCTGGTACTTAATCTAGATCACACCCTGCTGACTCGTGCGCAACTCAGTGATCTGACCCCTGAAGAAGAAGAATATGTAAAGACTTTAACGATGGATCATACTCTGCCTTTGCAAGATGTTTTCAAAGTGCAAGATCATCCCAAAATGAAGCCTATGATTTTCAAGTTGAGGCCCTTTGTGAGAGCCTTTCTGAAGGAAGCCAGTGACATGTTTGAAATTTATGCATATACAAATGCTTCTCGACCTCTTGTGTGGAAAATGGTTGAGCTACTCGATCCTAGAAATGAGTACTTTGGTCGTAGAGTGATATCGCGTGAGGATTTTGTTAGTTCCTATGCAGGAAATAAGTGTCTTGATCTTGTGCTTGCCCAAGAGTCTACTGTTTTGATCCTTGATCATAAACAAGAGACATGGATGGAGCAAAATAAAAAAAATATAGTACTAATGCAAAAGTATCGGTTCTTTAAAGAAAGGAGTGAACAGAACAGTGAGTTCAAGTCCCATTGTGAGTTGAAAACTGATGAAGGGGTGTATCTTGCAGTTATCCTTCAACATCTGAAGCGAATTCACAGCAGGTTCTTTGATGATCAAGTGATGTGTGACAACCTTATCGACAGAGATGTGCGGAAGGTGTTGGAAACTCTTCAGGGGTACGTCTTGAAGGGATGTAAAATTGCTTTTGATCCTCTTCAGGCTAATAACCCTCGGTTGTGGAAGATGGCAGAGCAGTTGGGAGCACACTGTGTTGAACAACTGGACCCATCGGTCACACACGTGGTTGCAGCCCATGTTGGAACACCGGAATCTCGTTGGGCAGTGGAAAGAAACAAGTTCTTGGTCCATCCGAGTTGGATTGAAGCATCAAATTGGATGTGGGAAAAGAGTCATGAAGACAAGTTTCCTATTATCCAGGACATTAGGCAACAGAAGATGGCAGAGCAGTCGGGAACTACTTGTGATGAACAAATGGATCTAGCGGCTACAGAGGTGGTTGTGGCTCATGTTGGAGTACCTGCTTGTTCGTTGCAACCATGTTCCGTGGAAGCATCACTCAGTTTGTGCAATGAGAGTACTGAAGACAAGATTCCTGTTATTGAGGATGGCAAATTTACCTGCAGCACATTTGGTGGCAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

458

Amino Acids

52.52

Weight (kDa)

5.83

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	78 - 245	4e-21	NLI interacting factor-like phosphatase
BRCT	PF00533	297 - 366	7e-08	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018636)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189961
rosa_laevigata	RLG00000004573 RLG00000024741
rosa_multiflora	Rmu_co8447775.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265010
rosa_rugosa	Rorug06G0501500
rosa_samantha	Rh7AG106600 Rh7BG109300 Rh7CG111400 Rh7DG109800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	998
Acc16I	TGCGCA	1 cut(s)	273
Acc36I	ACCTGC	3 cut(s)	798, 1255, 1355
AccI	GTMKAC	1 cut(s)	611
AccII	CGCG	1 cut(s)	547
AciI	CCGC	3 cut(s)	190, 859, 1211
AclWI	GGATC	5 cut(s)	336, 503, 616, 911, 1212
AcsI	RAATTY	3 cut(s)	450, 798, 1340
AcuI	CTGAAG	6 cut(s)	315, 446, 812, 863, 908, 1329
AcvI	CACGTG	1 cut(s)	1009
AdeI	CACNNNGTG	1 cut(s)	977
AfaI	GTAC	6 cut(s)	240, 524, 675, 887, 1245, 1306
AflIII	ACRYGT	2 cut(s)	441, 1006
AjnI	CCWGG	2 cut(s)	234, 1143
AleI	CACNNNNGTG	1 cut(s)	1007
AluBI	AGCT	2 cut(s)	502, 1368
AluI	AGCT	2 cut(s)	502, 1368
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	5 cut(s)	336, 503, 616, 911, 1212
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	1016, 1350, 1365
ApoI	RAATTY	3 cut(s)	450, 798, 1340
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	405, 991, 1072
AvaII	GGWCC	2 cut(s)	991, 1072
BaeGI	GKGCMC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	1009
BbsI	GAAGAC	2 cut(s)	1131, 1317
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	2 cut(s)	1028, 1362
BccI	CCATC	7 cut(s)	319, 643, 946, 1003, 1083, 1159, 1328
BcgI	CGANNNNNNTGC	4 cut(s)	671, 705, 1158, 1192
BciT130I	CCWGG	2 cut(s)	236, 1145
BclI	TGATCA	2 cut(s)	628, 820
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	3 cut(s)	248, 513, 1208
BfmI	CTRYAG	2 cut(s)	1215, 1348
BfuAI	ACCTGC	3 cut(s)	798, 1255, 1355
BisI	GCNGC	4 cut(s)	1017, 1212, 1351, 1366
BlsI	GCNGC	4 cut(s)	1018, 1213, 1352, 1367
BmcAI	AGTACT	3 cut(s)	524, 675, 1306
Bme1390I	CCNGG	2 cut(s)	236, 1145
Bme18I	GGWCC	2 cut(s)	991, 1072
BmgT120I	GGNCC	3 cut(s)	405, 991, 1072
BmiI	GGNNCC	1 cut(s)	993
BmrFI	CCNGG	2 cut(s)	236, 1145
BmsI	GCATC	2 cut(s)	1103, 1289
BpiI	GAAGAC	2 cut(s)	1131, 1317
BsaAI	YACGTR	1 cut(s)	1009
BsaJI	CCNNGG	2 cut(s)	938, 1272
BsaWI	WCCGGW	1 cut(s)	1033
Bse1I	ACTGG	2 cut(s)	435, 993
Bse3DI	GCAATG	1 cut(s)	1303
BseBI	CCWGG	2 cut(s)	236, 1145
BseDI	CCNNGG	2 cut(s)	938, 1272
BseGI	GGATG	6 cut(s)	370, 654, 905, 1075, 1110, 1339
BseMI	GCAATG	1 cut(s)	1303
BseMII	CTCAG	2 cut(s)	292, 1300
BseNI	ACTGG	2 cut(s)	435, 993
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	1028, 1362
Bsh1236I	CGCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	973
BsiSI	CCGG	1 cut(s)	1034
BslFI	GGGAC	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	86, 973
BspACI	CCGC	3 cut(s)	190, 859, 1211
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	291, 1299
BspFNI	CGCG	1 cut(s)	547
BspHI	TCATGA	2 cut(s)	205, 1120
BspLI	GGNNCC	1 cut(s)	993
BspMAI	CTGCAG	1 cut(s)	1352
BspMI	ACCTGC	3 cut(s)	798, 1255, 1355
BspPI	GGATC	5 cut(s)	336, 503, 616, 911, 1212
BsrDI	GCAATG	1 cut(s)	1303
BsrI	ACTGG	2 cut(s)	435, 993
BssECI	CCNNGG	2 cut(s)	938, 1272
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	236, 1145
Bst4CI	ACNGT	3 cut(s)	616, 722, 977
Bst6I	CTCTTC	2 cut(s)	882, 927
BstBAI	YACGTR	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	278, 1286
BstDSI	CCRYGG	1 cut(s)	1272
BstF5I	GGATG	6 cut(s)	370, 654, 905, 1075, 1110, 1339
BstFNI	CGCG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	635
BstNI	CCWGG	2 cut(s)	236, 1145
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	234, 1143
BstSFI	CTRYAG	2 cut(s)	1215, 1348
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	1028, 1362
BstV2I	GAAGAC	2 cut(s)	1131, 1317
BstX2I	RGATCY	1 cut(s)	1204
BstYI	RGATCY	1 cut(s)	1204
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	1272
BtsCI	GGATG	6 cut(s)	370, 654, 905, 1075, 1110, 1339
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	5 cut(s)	286, 442, 727, 973, 1056
BveI	ACCTGC	3 cut(s)	798, 1255, 1355
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	2 cut(s)	205, 1120
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	405, 991, 1072
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	6 cut(s)	239, 523, 674, 886, 1244, 1305
CviAII	CATG	7 cut(s)	206, 442, 645, 1022, 1121, 1235, 1266
CviQI	GTAC	6 cut(s)	239, 523, 674, 886, 1244, 1305
DdeI	CTNAG	2 cut(s)	278, 1286
DraI	TTTAAA	1 cut(s)	700
DraIII	CACNNNGTG	1 cut(s)	977
DrdI	GACNNNNNNGTC	1 cut(s)	998
DseDI	GACNNNNNNGTC	1 cut(s)	998
Eam1104I	CTCTTC	2 cut(s)	882, 927
EarI	CTCTTC	2 cut(s)	882, 927
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	991, 1072
Eco57I	CTGAAG	6 cut(s)	315, 446, 812, 863, 908, 1329
Eco72I	CACGTG	1 cut(s)	1009
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	798
EcoRII	CCWGG	2 cut(s)	234, 1143
EcoRV	GATATC	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	7 cut(s)	209, 445, 648, 1025, 1124, 1238, 1269
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	7 cut(s)	205, 441, 644, 1021, 1120, 1234, 1265
FbaI	TGATCA	2 cut(s)	628, 820
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	4 cut(s)	1017, 1212, 1351, 1366
FokI	GGATG	6 cut(s)	357, 661, 912, 1062, 1117, 1346
Fsp4HI	GCNGC	4 cut(s)	1017, 1212, 1351, 1366
FspBI	CTAG	3 cut(s)	248, 513, 1208
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	1017, 1212, 1351, 1366
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	1034
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	7 cut(s)	209, 445, 648, 1025, 1124, 1238, 1269
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	3 cut(s)	22, 142, 199
HindII	GTYRAC	3 cut(s)	22, 142, 199
HinfI	GANTC	5 cut(s)	265, 608, 1037, 1117, 1318
HpaII	CCGG	1 cut(s)	1034
Hpy166II	GTNNAC	5 cut(s)	22, 142, 199, 612, 713
Hpy188I	TCNGA	5 cut(s)	16, 288, 426, 792, 1080
Hpy188III	TCNNGA	7 cut(s)	206, 248, 474, 587, 892, 1121, 1179
Hpy8I	GTNNAC	5 cut(s)	22, 142, 199, 612, 713
HpyAV	CCTTC	7 cut(s)	176, 187, 421, 752, 791, 856, 889
HpyCH4III	ACNGT	3 cut(s)	616, 722, 977
HpyCH4IV	ACGT	2 cut(s)	888, 1008
HpyF3I	CTNAG	2 cut(s)	278, 1286
HpySE526I	ACGT	2 cut(s)	888, 1008
Hsp92II	CATG	7 cut(s)	209, 445, 648, 1025, 1124, 1238, 1269
HspAI	GCGC	1 cut(s)	272
Ksp22I	TGATCA	2 cut(s)	628, 820
LmnI	GCTCC	2 cut(s)	652, 968
Lsp1109I	GCAGC	2 cut(s)	1028, 1362
LweI	GCATC	2 cut(s)	1103, 1289
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	3 cut(s)	248, 513, 1208
MaeII	ACGT	2 cut(s)	888, 1008
MaeIII	GTNAC	4 cut(s)	151, 437, 833, 1000
MboII	GAAGA	9 cut(s)	308, 311, 314, 869, 914, 961, 1136, 1174, 1322
MflI	RGATCY	1 cut(s)	1204
MhlI	GDGCHC	2 cut(s)	86, 973
MluCI	AATT	6 cut(s)	177, 450, 798, 906, 1099, 1340
MlyI	GAGTC	3 cut(s)	259, 617, 1126
MmeI	TCCRAC	4 cut(s)	849, 1006, 1064, 1219
MnlI	CCTC	8 cut(s)	61, 396, 489, 544, 930, 948, 1213, 1324
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	5 cut(s)	72, 165, 243, 320, 699
MslI	CAYNNNNRTG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	2 cut(s)	236, 1145
MvaI	CCWGG	2 cut(s)	236, 1145
MvnI	CGCG	1 cut(s)	547
NlaIII	CATG	7 cut(s)	209, 445, 648, 1025, 1124, 1238, 1269
NlaIV	GGNNCC	1 cut(s)	993
NmuCI	GTSAC	4 cut(s)	151, 437, 833, 1000
NsbI	TGCGCA	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	1007
PagI	TCATGA	2 cut(s)	205, 1120
PciI	ACATGT	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	2 cut(s)	1037, 1318
PfoI	TCCNGGA	1 cut(s)	1143
PkrI	GCNGC	4 cut(s)	1018, 1213, 1352, 1367
PleI	GAGTC	3 cut(s)	259, 616, 1125
PmaCI	CACGTG	1 cut(s)	1009
PmlI	CACGTG	1 cut(s)	1009
PpsI	GAGTC	3 cut(s)	259, 616, 1125
Ppu21I	YACGTR	1 cut(s)	1009
PscI	ACATGT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	234, 1143
PspCI	CACGTG	1 cut(s)	1009
PspGI	CCWGG	2 cut(s)	234, 1143
PspN4I	GGNNCC	1 cut(s)	993
PspPI	GGNCC	3 cut(s)	405, 991, 1072
PstI	CTGCAG	1 cut(s)	1352
PsuI	RGATCY	1 cut(s)	1204
RsaI	GTAC	6 cut(s)	240, 524, 675, 887, 1245, 1306
RsaNI	GTAC	6 cut(s)	239, 523, 674, 886, 1244, 1305
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	5 cut(s)	72, 165, 243, 320, 699
SatI	GCNGC	4 cut(s)	1017, 1212, 1351, 1366
Sau96I	GGNCC	3 cut(s)	405, 991, 1072
ScaI	AGTACT	3 cut(s)	524, 675, 1306
SchI	GAGTC	3 cut(s)	259, 617, 1126
ScrFI	CCNGG	2 cut(s)	236, 1145
SduI	GDGCHC	2 cut(s)	86, 973
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	1103, 1289
SfcI	CTRYAG	2 cut(s)	1215, 1348
SinI	GGWCC	2 cut(s)	991, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	1007
Sse9I	AATT	6 cut(s)	177, 450, 798, 906, 1099, 1340
SsiI	CCGC	3 cut(s)	190, 859, 1211
SspMI	CTAG	3 cut(s)	248, 513, 1208
StyD4I	CCNGG	2 cut(s)	234, 1143
TaaI	ACNGT	3 cut(s)	616, 722, 977
TaiI	ACGT	2 cut(s)	891, 1011
TaqI	TCGA	4 cut(s)	50, 475, 507, 846
TaqII	GACCGA	1 cut(s)	988
TasI	AATT	6 cut(s)	177, 450, 798, 906, 1099, 1340
TatI	WGTACW	3 cut(s)	522, 673, 1304
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	2 cut(s)	1037, 1318
Tru1I	TTAA	5 cut(s)	72, 165, 243, 320, 699
Tru9I	TTAA	5 cut(s)	72, 165, 243, 320, 699
TscAI	CASTG	5 cut(s)	286, 442, 727, 980, 1056
TseFI	GTSAC	4 cut(s)	151, 437, 833, 1000
TseI	GCWGC	3 cut(s)	1016, 1350, 1365
Tsp45I	GTSAC	4 cut(s)	151, 437, 833, 1000
TspDTI	ATGAA	6 cut(s)	189, 222, 395, 771, 1137, 1209
TspGWI	ACGGA	1 cut(s)	1261
TspRI	CASTG	5 cut(s)	286, 442, 727, 980, 1056
VpaK11BI	GGWCC	2 cut(s)	991, 1072
XapI	RAATTY	3 cut(s)	450, 798, 1340
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	3 cut(s)	248, 513, 1208
ZrmI	AGTACT	3 cut(s)	524, 675, 1306
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.