RNA polymerase II C-terminal domain phosphatase-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr7g0189961 |
| rosa_laevigata | RLG00000004573 RLG00000024741 |
| rosa_multiflora | Rmu_co8447775.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265010 |
| rosa_rugosa | Rorug06G0501500 |
| rosa_samantha | Rh7AG106600 Rh7BG109300 Rh7CG111400 Rh7DG109800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1040 |
| AccII | CGCG | 1 cut(s) | 598 |
| AciI | CCGC | 4 cut(s) | 274, 394, 538, 1210 |
| AclWI | GGATC | 4 cut(s) | 380, 554, 567, 667 |
| AcsI | RAATTY | 2 cut(s) | 50, 517 |
| AcuI | CTGAAG | 1 cut(s) | 950 |
| AfaI | GTAC | 3 cut(s) | 294, 512, 575 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 81, 967 |
| AflII | CTTAAG | 1 cut(s) | 833 |
| AflIII | ACRYGT | 2 cut(s) | 492, 1048 |
| AgsI | TTSAA | 5 cut(s) | 214, 467, 827, 1025, 1133 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 18 |
| AjnI | CCWGG | 1 cut(s) | 345 |
| AleI | CACNNNNGTG | 1 cut(s) | 1049 |
| AluBI | AGCT | 5 cut(s) | 238, 769, 979, 1013, 1061 |
| AluI | AGCT | 5 cut(s) | 238, 769, 979, 1013, 1061 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 2 cut(s) | 594, 1212 |
| AlwI | GGATC | 4 cut(s) | 380, 554, 567, 667 |
| AoxI | GGCC | 3 cut(s) | 83, 455, 969 |
| ApeKI | GCWGC | 2 cut(s) | 612, 1058 |
| ApoI | RAATTY | 2 cut(s) | 50, 517 |
| AseI | ATTAAT | 1 cut(s) | 105 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 546, 918 |
| AspS9I | GGNCC | 4 cut(s) | 12, 72, 456, 927 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 239, 370 |
| AvaII | GGWCC | 3 cut(s) | 12, 72, 927 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BaeGI | GKGCMC | 1 cut(s) | 1093 |
| BamHI | GGATCC | 1 cut(s) | 559 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BbsI | GAAGAC | 1 cut(s) | 1173 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvI | GCAGC | 2 cut(s) | 624, 1070 |
| BccI | CCATC | 4 cut(s) | 65, 218, 781, 988 |
| BciT130I | CCWGG | 1 cut(s) | 347 |
| BclI | TGATCA | 2 cut(s) | 109, 679 |
| BcoDI | GTCTC | 2 cut(s) | 594, 1212 |
| BfaI | CTAG | 3 cut(s) | 585, 689, 1270 |
| BfmI | CTRYAG | 1 cut(s) | 980 |
| BfrI | CTTAAG | 1 cut(s) | 833 |
| BglII | AGATCT | 1 cut(s) | 773 |
| BisI | GCNGC | 3 cut(s) | 395, 613, 1059 |
| BlsI | GCNGC | 3 cut(s) | 396, 614, 1060 |
| BmcAI | AGTACT | 1 cut(s) | 575 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| Bme18I | GGWCC | 3 cut(s) | 12, 72, 927 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 72, 456, 927 |
| BmiI | GGNNCC | 3 cut(s) | 13, 561, 928 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 2 cut(s) | 1046, 1145 |
| BpiI | GAAGAC | 1 cut(s) | 1173 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 3 cut(s) | 431, 461, 639 |
| Bsa29I | ATCGAT | 1 cut(s) | 333 |
| BsaBI | GATNNNNATC | 2 cut(s) | 114, 146 |
| BsaJI | CCNNGG | 1 cut(s) | 345 |
| BsaWI | WCCGGW | 1 cut(s) | 1075 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 406, 436 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 81, 967 |
| Bse118I | RCCGGY | 1 cut(s) | 326 |
| Bse1I | ACTGG | 4 cut(s) | 286, 486, 561, 1098 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| Bse8I | GATNNNNATC | 2 cut(s) | 114, 146 |
| BseBI | CCWGG | 1 cut(s) | 347 |
| BseCI | ATCGAT | 1 cut(s) | 333 |
| BseDI | CCNNGG | 1 cut(s) | 345 |
| BseGI | GGATG | 1 cut(s) | 1195 |
| BseJI | GATNNNNATC | 2 cut(s) | 114, 146 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 81, 967 |
| BseMII | CTCAG | 1 cut(s) | 784 |
| BseNI | ACTGG | 4 cut(s) | 286, 486, 561, 1098 |
| BseRI | GAGGAG | 2 cut(s) | 80, 773 |
| BseSI | GKGCMC | 1 cut(s) | 1093 |
| BseXI | GCAGC | 2 cut(s) | 624, 1070 |
| Bsh1236I | CGCG | 1 cut(s) | 598 |
| BshFI | GGCC | 3 cut(s) | 85, 457, 971 |
| BshVI | ATCGAT | 1 cut(s) | 333 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiSI | CCGG | 2 cut(s) | 327, 1076 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 81, 967 |
| BsmAI | GTCTC | 2 cut(s) | 594, 1212 |
| BsmBI | CGTCTC | 1 cut(s) | 594 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsnI | GGCC | 3 cut(s) | 85, 457, 971 |
| Bsp1286I | GDGCHC | 2 cut(s) | 771, 1093 |
| Bsp143I | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| Bsp68I | TCGCGA | 1 cut(s) | 598 |
| BspACI | CCGC | 4 cut(s) | 274, 394, 538, 1210 |
| BspANI | GGCC | 3 cut(s) | 85, 457, 971 |
| BspCNI | CTCAG | 1 cut(s) | 783 |
| BspDI | ATCGAT | 1 cut(s) | 333 |
| BspFNI | CGCG | 1 cut(s) | 598 |
| BspHI | TCATGA | 1 cut(s) | 1162 |
| BspLI | GGNNCC | 3 cut(s) | 13, 561, 928 |
| BspPI | GGATC | 4 cut(s) | 380, 554, 567, 667 |
| BspTI | CTTAAG | 1 cut(s) | 833 |
| BsrFI | RCCGGY | 1 cut(s) | 326 |
| BsrI | ACTGG | 4 cut(s) | 286, 486, 561, 1098 |
| BssAI | RCCGGY | 1 cut(s) | 326 |
| BssECI | CCNNGG | 1 cut(s) | 345 |
| BssMI | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| Bst2UI | CCWGG | 1 cut(s) | 347 |
| Bst4CI | ACNGT | 2 cut(s) | 418, 984 |
| Bst6I | CTCTTC | 7 cut(s) | 93, 750, 924, 969, 1092, 1226, 1239 |
| BstAFI | CTTAAG | 1 cut(s) | 833 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1064 |
| BstC8I | GCNNGC | 2 cut(s) | 651, 767 |
| BstDEI | CTNAG | 2 cut(s) | 87, 770 |
| BstF5I | GGATG | 1 cut(s) | 1195 |
| BstFNI | CGCG | 1 cut(s) | 598 |
| BstKTI | GATC | 8 cut(s) | 112, 150, 340, 388, 562, 675, 682, 776 |
| BstMAI | GTCTC | 2 cut(s) | 594, 1212 |
| BstMBI | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 194, 1064 |
| BstNI | CCWGG | 1 cut(s) | 347 |
| BstNSI | RCATGY | 2 cut(s) | 496, 1052 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstSFI | CTRYAG | 1 cut(s) | 980 |
| BstSLI | GKGCMC | 1 cut(s) | 1093 |
| BstUI | CGCG | 1 cut(s) | 598 |
| BstV1I | GCAGC | 2 cut(s) | 624, 1070 |
| BstV2I | GAAGAC | 1 cut(s) | 1173 |
| BstX2I | RGATCY | 2 cut(s) | 559, 773 |
| BstYI | RGATCY | 2 cut(s) | 559, 773 |
| Bsu15I | ATCGAT | 1 cut(s) | 333 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BsuRI | GGCC | 3 cut(s) | 85, 457, 971 |
| BsuTUI | ATCGAT | 1 cut(s) | 333 |
| BtsCI | GGATG | 1 cut(s) | 1195 |
| BtsIMutI | CAGTG | 2 cut(s) | 493, 1091 |
| BtuMI | TCGCGA | 1 cut(s) | 598 |
| Cac8I | GCNNGC | 2 cut(s) | 651, 767 |
| CciI | TCATGA | 1 cut(s) | 1162 |
| Cfr10I | RCCGGY | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 72, 456, 927 |
| ClaI | ATCGAT | 1 cut(s) | 333 |
| CseI | GACGC | 1 cut(s) | 1043 |
| Csp6I | GTAC | 3 cut(s) | 293, 511, 574 |
| CviAII | CATG | 5 cut(s) | 493, 696, 1049, 1064, 1163 |
| CviQI | GTAC | 3 cut(s) | 293, 511, 574 |
| DdeI | CTNAG | 2 cut(s) | 87, 770 |
| DpnI | GATC | 8 cut(s) | 111, 149, 339, 387, 561, 674, 681, 775 |
| DpnII | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1040 |
| DriI | GACNNNNNGTC | 1 cut(s) | 18 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1040 |
| Eam1104I | CTCTTC | 7 cut(s) | 93, 750, 924, 969, 1092, 1226, 1239 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 7 cut(s) | 93, 750, 924, 969, 1092, 1226, 1239 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| Eco147I | AGGCCT | 1 cut(s) | 85 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco32I | GATATC | 1 cut(s) | 370 |
| Eco47I | GGWCC | 3 cut(s) | 12, 72, 927 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| Eco57I | CTGAAG | 1 cut(s) | 950 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoO109I | RGGNCCY | 1 cut(s) | 456 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 345 |
| EcoRV | GATATC | 1 cut(s) | 370 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| Esp3I | CGTCTC | 1 cut(s) | 594 |
| FaeI | CATG | 5 cut(s) | 496, 699, 1052, 1067, 1166 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FatI | CATG | 5 cut(s) | 492, 695, 1048, 1063, 1162 |
| FauI | CCCGC | 1 cut(s) | 531 |
| FbaI | TGATCA | 2 cut(s) | 109, 679 |
| Fnu4HI | GCNGC | 3 cut(s) | 395, 613, 1059 |
| FokI | GGATG | 1 cut(s) | 1202 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 3 cut(s) | 395, 613, 1059 |
| FspBI | CTAG | 3 cut(s) | 585, 689, 1270 |
| GluI | GCNGC | 3 cut(s) | 395, 613, 1059 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeIII | GGCC | 3 cut(s) | 85, 457, 971 |
| HapII | CCGG | 2 cut(s) | 327, 1076 |
| HgaI | GACGC | 1 cut(s) | 1043 |
| Hin1II | CATG | 5 cut(s) | 496, 699, 1052, 1067, 1166 |
| HinfI | GANTC | 4 cut(s) | 4, 321, 659, 1079 |
| HpaII | CCGG | 2 cut(s) | 327, 1076 |
| HphI | GGTGA | 3 cut(s) | 56, 239, 370 |
| Hpy166II | GTNNAC | 1 cut(s) | 511 |
| Hpy188I | TCNGA | 4 cut(s) | 141, 342, 773, 1122 |
| Hpy188III | TCNNGA | 4 cut(s) | 260, 597, 656, 1163 |
| Hpy8I | GTNNAC | 1 cut(s) | 511 |
| HpyAV | CCTTC | 2 cut(s) | 794, 898 |
| HpyCH4III | ACNGT | 2 cut(s) | 418, 984 |
| HpyCH4IV | ACGT | 1 cut(s) | 829 |
| HpyCH4V | TGCA | 4 cut(s) | 612, 733, 815, 1058 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 194, 1064 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 770 |
| HpySE526I | ACGT | 1 cut(s) | 829 |
| Hsp92II | CATG | 5 cut(s) | 496, 699, 1052, 1067, 1166 |
| Ksp22I | TGATCA | 2 cut(s) | 109, 679 |
| Kzo9I | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| LmnI | GCTCC | 2 cut(s) | 703, 1010 |
| Lsp1109I | GCAGC | 2 cut(s) | 624, 1070 |
| LweI | GCATC | 2 cut(s) | 1046, 1145 |
| MaeI | CTAG | 3 cut(s) | 585, 689, 1270 |
| MaeII | ACGT | 1 cut(s) | 829 |
| MaeIII | GTNAC | 5 cut(s) | 199, 412, 488, 875, 1042 |
| MalI | GATC | 8 cut(s) | 111, 149, 339, 387, 561, 674, 681, 775 |
| MboI | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| MflI | RGATCY | 2 cut(s) | 559, 773 |
| MhlI | GDGCHC | 2 cut(s) | 771, 1093 |
| MluCI | AATT | 7 cut(s) | 50, 231, 374, 517, 543, 948, 1197 |
| MlyI | GAGTC | 3 cut(s) | 13, 330, 668 |
| MmeI | TCCRAC | 1 cut(s) | 1106 |
| MroXI | GAANNNNTTC | 2 cut(s) | 546, 918 |
| MseI | TTAA | 2 cut(s) | 105, 834 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1049 |
| MspCI | CTTAAG | 1 cut(s) | 833 |
| MspI | CCGG | 2 cut(s) | 327, 1076 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| MvaI | CCWGG | 1 cut(s) | 347 |
| MvnI | CGCG | 1 cut(s) | 598 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 194, 1064 |
| NdeII | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| NlaIII | CATG | 5 cut(s) | 496, 699, 1052, 1067, 1166 |
| NlaIV | GGNNCC | 3 cut(s) | 13, 561, 928 |
| NmuCI | GTSAC | 5 cut(s) | 199, 412, 488, 875, 1042 |
| NruI | TCGCGA | 1 cut(s) | 598 |
| NspI | RCATGY | 2 cut(s) | 496, 1052 |
| OliI | CACNNNNGTG | 1 cut(s) | 1049 |
| PagI | TCATGA | 1 cut(s) | 1162 |
| PceI | AGGCCT | 1 cut(s) | 85 |
| PciI | ACATGT | 2 cut(s) | 492, 1048 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 258, 330 |
| PdmI | GAANNNNTTC | 2 cut(s) | 546, 918 |
| PfeI | GAWTC | 1 cut(s) | 1079 |
| PkrI | GCNGC | 3 cut(s) | 396, 614, 1060 |
| PleI | GAGTC | 3 cut(s) | 12, 329, 667 |
| PpsI | GAGTC | 3 cut(s) | 12, 329, 667 |
| PscI | ACATGT | 2 cut(s) | 492, 1048 |
| PshBI | ATTAAT | 1 cut(s) | 105 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| Psp6I | CCWGG | 1 cut(s) | 345 |
| PspGI | CCWGG | 1 cut(s) | 345 |
| PspN4I | GGNNCC | 3 cut(s) | 13, 561, 928 |
| PspPI | GGNCC | 4 cut(s) | 12, 72, 456, 927 |
| PsuI | RGATCY | 2 cut(s) | 559, 773 |
| RruI | TCGCGA | 1 cut(s) | 598 |
| RsaI | GTAC | 3 cut(s) | 294, 512, 575 |
| RsaNI | GTAC | 3 cut(s) | 293, 511, 574 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1049 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SaqAI | TTAA | 2 cut(s) | 105, 834 |
| SatI | GCNGC | 3 cut(s) | 395, 613, 1059 |
| Sau3AI | GATC | 8 cut(s) | 109, 147, 337, 385, 559, 672, 679, 773 |
| Sau96I | GGNCC | 4 cut(s) | 12, 72, 456, 927 |
| ScaI | AGTACT | 1 cut(s) | 575 |
| SchI | GAGTC | 3 cut(s) | 13, 330, 668 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SduI | GDGCHC | 2 cut(s) | 771, 1093 |
| SfaNI | GCATC | 2 cut(s) | 1046, 1145 |
| SfcI | CTRYAG | 1 cut(s) | 980 |
| SinI | GGWCC | 3 cut(s) | 12, 72, 927 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1049 |
| SmlI | CTYRAG | 4 cut(s) | 446, 476, 654, 833 |
| SmoI | CTYRAG | 4 cut(s) | 446, 476, 654, 833 |
| Sse9I | AATT | 7 cut(s) | 50, 231, 374, 517, 543, 948, 1197 |
| SseBI | AGGCCT | 1 cut(s) | 85 |
| SsiI | CCGC | 4 cut(s) | 274, 394, 538, 1210 |
| SspMI | CTAG | 3 cut(s) | 585, 689, 1270 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StuI | AGGCCT | 1 cut(s) | 85 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaaI | ACNGT | 2 cut(s) | 418, 984 |
| TaiI | ACGT | 1 cut(s) | 832 |
| TaqI | TCGA | 4 cut(s) | 333, 639, 888, 957 |
| TaqII | GACCGA | 2 cut(s) | 29, 1030 |
| TasI | AATT | 7 cut(s) | 50, 231, 374, 517, 543, 948, 1197 |
| TatI | WGTACW | 2 cut(s) | 510, 573 |
| TauI | GCSGC | 1 cut(s) | 397 |
| TfiI | GAWTC | 1 cut(s) | 1079 |
| Tru1I | TTAA | 2 cut(s) | 105, 834 |
| Tru9I | TTAA | 2 cut(s) | 105, 834 |
| TscAI | CASTG | 2 cut(s) | 493, 1098 |
| TseFI | GTSAC | 5 cut(s) | 199, 412, 488, 875, 1042 |
| TseI | GCWGC | 2 cut(s) | 612, 1058 |
| Tsp45I | GTSAC | 5 cut(s) | 199, 412, 488, 875, 1042 |
| TspDTI | ATGAA | 5 cut(s) | 63, 446, 518, 813, 1179 |
| TspGWI | ACGGA | 1 cut(s) | 919 |
| TspRI | CASTG | 2 cut(s) | 493, 1098 |
| Vha464I | CTTAAG | 1 cut(s) | 833 |
| VpaK11BI | GGWCC | 3 cut(s) | 12, 72, 927 |
| VspI | ATTAAT | 1 cut(s) | 105 |
| XapI | RAATTY | 2 cut(s) | 50, 517 |
| XceI | RCATGY | 2 cut(s) | 496, 1052 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 38 |
| XmnI | GAANNNNTTC | 2 cut(s) | 546, 918 |
| XspI | CTAG | 3 cut(s) | 585, 689, 1270 |
| ZrmI | AGTACT | 1 cut(s) | 575 |